Strain Fitness in Escherichia fergusonii Becca around EFB2_02249

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,385,371	+		EFB2_02248	0.29	-2.3
2,385,384	-		EFB2_02248	0.30	+0.1
2,385,384	-		EFB2_02248	0.30	+1.5
2,385,458	+		EFB2_02248	0.35	-0.5
2,385,459	-		EFB2_02248	0.35	-2.1
2,385,485	-		EFB2_02248	0.37	+2.4
2,385,485	-		EFB2_02248	0.37	-1.0
2,385,537	+		EFB2_02248	0.41	-1.5
2,385,537	+		EFB2_02248	0.41	+2.0
2,385,568	-		EFB2_02248	0.44	-1.5
2,385,568	-		EFB2_02248	0.44	+1.2
2,385,590	+		EFB2_02248	0.45	-1.1
2,385,725	+		EFB2_02248	0.55	-0.1
2,385,799	+		EFB2_02248	0.61	+0.9
2,385,799	+		EFB2_02248	0.61	-0.6
2,385,799	+		EFB2_02248	0.61	+2.2
2,385,800	-		EFB2_02248	0.61	-1.5
2,385,833	+		EFB2_02248	0.63	-3.3
2,385,841	+		EFB2_02248	0.64	-0.4
2,385,841	+		EFB2_02248	0.64	+0.9
2,385,841	+		EFB2_02248	0.64	+0.3
2,385,841	+		EFB2_02248	0.64	-0.9
2,385,841	+		EFB2_02248	0.64	-1.0
2,385,841	+		EFB2_02248	0.64	-1.4
2,385,841	+		EFB2_02248	0.64	+0.1
2,385,841	+		EFB2_02248	0.64	+0.8
2,385,842	-		EFB2_02248	0.64	+2.5
2,385,842	-		EFB2_02248	0.64	+1.4
2,385,842	-		EFB2_02248	0.64	-1.5
2,385,842	-		EFB2_02248	0.64	+1.3
2,385,842	-		EFB2_02248	0.64	-2.4
2,385,884	+		EFB2_02248	0.67	-1.5
2,385,884	+		EFB2_02248	0.67	+1.6
2,385,884	+		EFB2_02248	0.67	-1.9
2,385,884	+		EFB2_02248	0.67	+1.3
2,385,884	+		EFB2_02248	0.67	+0.9
2,385,884	+		EFB2_02248	0.67	+1.0
2,385,884	+		EFB2_02248	0.67	+0.3
2,385,884	+		EFB2_02248	0.67	-1.5
2,385,885	-		EFB2_02248	0.67	-1.4
2,385,885	-		EFB2_02248	0.67	-0.1
2,385,885	-		EFB2_02248	0.67	-0.7
2,385,885	-		EFB2_02248	0.67	-0.3
2,385,885	-		EFB2_02248	0.67	+0.4
2,385,885	-		EFB2_02248	0.67	-0.3
2,385,888	+		EFB2_02248	0.67	-0.5
2,385,888	+		EFB2_02248	0.67	-1.8
2,385,888	+		EFB2_02248	0.67	+0.5
2,385,888	+		EFB2_02248	0.67	-1.6
2,385,888	+		EFB2_02248	0.67	-0.1
2,385,888	+		EFB2_02248	0.67	-0.3
2,385,888	+		EFB2_02248	0.67	-0.1
2,385,888	+		EFB2_02248	0.67	-1.7
2,385,889	-		EFB2_02248	0.67	-0.7
2,385,889	-		EFB2_02248	0.67	-1.4
2,385,889	-		EFB2_02248	0.67	+1.5
2,385,889	-		EFB2_02248	0.67	+0.9
2,385,889	-		EFB2_02248	0.67	+0.9
2,385,889	-		EFB2_02248	0.67	-1.2
2,385,889	-		EFB2_02248	0.67	-1.4
2,385,889	-		EFB2_02248	0.67	-0.1
2,385,974	-		EFB2_02248	0.74	+1.2
2,385,974	-		EFB2_02248	0.74	+1.0
2,386,015	+		EFB2_02248	0.77	-1.0
2,386,015	+		EFB2_02248	0.77	-0.4
2,386,024	+		EFB2_02248	0.78	-1.5
2,386,024	+		EFB2_02248	0.78	+3.2
2,386,025	-		EFB2_02248	0.78	+1.3
2,386,039	+		EFB2_02248	0.79	-0.5
2,386,040	-		EFB2_02248	0.79	+0.5
2,386,145	+		EFB2_02248	0.87	-0.4
2,386,145	+		EFB2_02248	0.87	+1.5
2,386,146	-		EFB2_02248	0.87	+0.5
2,386,154	+		EFB2_02248	0.87	-0.5
2,386,154	+		EFB2_02248	0.87	-1.1
2,386,183	-		EFB2_02248	0.89	-0.2
2,386,183	-		EFB2_02248	0.89	+0.2
2,386,183	-		EFB2_02248	0.89	+2.9
2,386,183	-		EFB2_02248	0.89	+0.1
2,386,186	-		EFB2_02248	0.90	+0.7
2,386,186	-		EFB2_02248	0.90	-2.4
2,386,199	+				+0.1
2,386,256	+				+1.2
2,386,256	+				-1.5
2,386,257	-				+1.2
2,386,270	+				+2.2
2,386,271	-				-0.9
2,386,291	-				+1.6
2,386,324	-				+2.1
2,386,324	-				+2.5
2,386,324	-				-0.4
2,386,324	-				-1.5
2,386,418	+		EFB2_02249	0.10	-2.1
2,386,419	-		EFB2_02249	0.10	+3.1
2,386,419	-		EFB2_02249	0.10	-1.2
2,386,479	+		EFB2_02249	0.17	-2.1
2,386,498	+		EFB2_02249	0.19	-2.3
2,386,527	-		EFB2_02249	0.22	-1.0
2,386,560	-		EFB2_02249	0.25	+0.5
2,386,606	+		EFB2_02249	0.30	-0.1
2,386,614	+		EFB2_02249	0.31	+0.3
2,386,652	+		EFB2_02249	0.34	+0.2
2,386,653	-		EFB2_02249	0.35	+0.1
2,386,653	-		EFB2_02249	0.35	+1.8
2,386,754	+		EFB2_02249	0.45	+0.8
2,386,754	+		EFB2_02249	0.45	+1.5
2,386,754	+		EFB2_02249	0.45	+0.6
2,386,754	+		EFB2_02249	0.45	-0.4
2,386,754	+		EFB2_02249	0.45	-0.2
2,386,754	+		EFB2_02249	0.45	+2.5
2,386,754	+		EFB2_02249	0.45	+0.1
2,386,754	+		EFB2_02249	0.45	+0.5
2,386,754	+		EFB2_02249	0.45	-0.9
2,386,754	+		EFB2_02249	0.45	+1.1
2,386,754	+		EFB2_02249	0.45	+1.6
2,386,754	+		EFB2_02249	0.45	-0.2
2,386,754	+		EFB2_02249	0.45	-0.1
2,386,754	+		EFB2_02249	0.45	+1.8
2,386,754	+		EFB2_02249	0.45	+4.5
2,386,755	-		EFB2_02249	0.45	-0.5
2,386,755	-		EFB2_02249	0.45	-1.2
2,386,755	-		EFB2_02249	0.45	-0.4
2,386,755	-		EFB2_02249	0.45	+2.2
2,386,755	-		EFB2_02249	0.45	+1.8
2,386,755	-		EFB2_02249	0.45	-1.2
2,386,755	-		EFB2_02249	0.45	+2.1
2,386,755	-		EFB2_02249	0.45	+3.0
2,386,755	-		EFB2_02249	0.45	+2.0
2,386,755	-		EFB2_02249	0.45	+1.5
2,386,755	-		EFB2_02249	0.45	+0.1
2,386,755	-		EFB2_02249	0.45	+0.9
2,386,758	+		EFB2_02249	0.45	+0.6
2,386,796	+		EFB2_02249	0.49	-1.4
2,386,796	+		EFB2_02249	0.49	+0.5
2,386,796	+		EFB2_02249	0.49	+0.1
2,386,796	+		EFB2_02249	0.49	+2.5
2,386,797	-		EFB2_02249	0.49	+0.3
2,386,797	-		EFB2_02249	0.49	-0.7
2,386,797	-		EFB2_02249	0.49	+3.5
2,386,797	-		EFB2_02249	0.49	+0.9
2,386,797	-		EFB2_02249	0.49	+2.7
2,386,893	+		EFB2_02249	0.59	-0.9
2,386,893	+		EFB2_02249	0.59	+1.4
2,386,893	+		EFB2_02249	0.59	-0.5
2,386,894	-		EFB2_02249	0.59	+0.5
2,386,894	-		EFB2_02249	0.59	+4.6
2,386,894	-		EFB2_02249	0.59	-0.7
2,386,938	+		EFB2_02249	0.64	-1.9
2,386,938	+		EFB2_02249	0.64	+0.9
2,386,939	-		EFB2_02249	0.64	+0.6
2,386,939	-		EFB2_02249	0.64	+0.1
2,386,997	+		EFB2_02249	0.70	-1.5
2,386,997	+		EFB2_02249	0.70	-0.9
2,386,998	-		EFB2_02249	0.70	-2.1
2,387,024	+		EFB2_02249	0.73	-0.1
2,387,024	+		EFB2_02249	0.73	+0.4
2,387,025	-		EFB2_02249	0.73	+1.8
2,387,088	+		EFB2_02249	0.79	+1.5
2,387,089	-		EFB2_02249	0.80	+1.0
2,387,118	+		EFB2_02249	0.83	-1.7
2,387,119	-		EFB2_02249	0.83	-0.7
2,387,142	+		EFB2_02249	0.85	+1.9
2,387,143	-		EFB2_02249	0.85	-1.1
2,387,193	+				-1.9
2,387,198	+				-2.1
2,387,210	+				+1.9
2,387,210	+				-0.4
2,387,210	+				+0.1
2,387,210	+				+2.5
2,387,210	+				-0.9
2,387,210	+				+1.0
2,387,210	+				+0.8
2,387,210	+				+1.1
2,387,210	+				+2.0
2,387,211	-				+1.3
2,387,211	-				+0.9
2,387,211	-				+0.1
2,387,211	-				-0.4
2,387,215	+				-0.9
2,387,215	+				-0.5
2,387,215	+				+0.9
2,387,216	-				-0.4
2,387,216	-				-1.5
2,387,216	-				-0.9
2,387,216	-				-0.1
2,387,253	-				-1.0
2,387,284	+				+1.4
2,387,284	+				-2.5
2,387,284	+				-2.3
2,387,284	+				+0.3
2,387,287	+				-0.1
2,387,332	-				+0.1
2,387,333	+				+1.7
2,387,359	-				+0.3
2,387,359	-				+1.6
2,387,389	-				+0.3
2,387,400	+				-0.6
2,387,508	+				+1.3
2,387,542	+				+1.8
2,387,570	+				+0.4
2,387,570	+				+2.0
2,387,570	+				-0.6
2,387,570	+				+1.3
2,387,571	-				-2.9
2,387,588	+				+1.3
2,387,592	+				+1.3
2,387,593	-				-2.9
2,387,609	-				+2.2
2,387,610	+				+2.6
2,387,610	+				+2.9
2,387,610	+				+0.9
2,387,610	+				+1.3
2,387,610	+				+1.1
2,387,611	-				-0.7
2,387,611	-				+3.2
2,387,611	-				+1.2
2,387,616	-				+0.9
2,387,648	+				+2.4
2,387,736	-		EFB2_02250	0.25	+0.4
2,387,736	-		EFB2_02250	0.25	+0.1
2,387,736	-		EFB2_02250	0.25	+2.2
2,387,736	-		EFB2_02250	0.25	+0.0
2,387,736	-		EFB2_02250	0.25	+1.8
2,387,736	-		EFB2_02250	0.25	+0.4
2,387,736	-		EFB2_02250	0.25	-0.4
2,387,897	+		EFB2_02250	0.58	+0.4
2,387,897	+		EFB2_02250	0.58	+0.1
2,387,897	+		EFB2_02250	0.58	-1.5
2,387,957	+		EFB2_02250	0.70	-1.6
2,387,957	+		EFB2_02250	0.70	-0.9
2,387,957	+		EFB2_02250	0.70	+2.6
2,387,994	+		EFB2_02250	0.78	+0.7
2,387,994	+		EFB2_02250	0.78	+1.0
2,387,994	+		EFB2_02250	0.78	-0.5
2,387,995	-		EFB2_02250	0.78	-2.7
2,388,030	-		EFB2_02250	0.85	-2.5
2,388,030	-		EFB2_02250	0.85	-1.1
2,388,035	+		EFB2_02250	0.86	-3.2
2,388,035	+		EFB2_02250	0.86	+0.9
2,388,035	+		EFB2_02250	0.86	+1.5
2,388,077	+				-2.3
2,388,077	+				+1.3
2,388,077	+				+0.9
2,388,077	+				-2.6
2,388,077	+				+2.0
2,388,078	-				-0.6
2,388,078	-				-0.4
2,388,078	-				-0.4
2,388,078	-				+1.0
2,388,099	+				-0.9
2,388,120	+				+0.4
2,388,120	+				-0.4
2,388,121	-				+2.8
2,388,142	+				-2.0
2,388,143	-				+1.2
2,388,143	-				+0.3
2,388,228	+				-3.0
2,388,228	+				+0.3
2,388,228	+				+0.1
2,388,228	+				+0.5
2,388,228	+				-1.1
2,388,228	+				+1.6
2,388,228	+				-2.1
2,388,229	-				-2.7
2,388,229	-				-0.9
2,388,229	-				-2.4
2,388,229	-				-0.9
2,388,229	-				-1.2
2,388,263	-				+0.1
2,388,274	-				-1.5
2,388,274	-				-1.5