Strain Fitness in Escherichia fergusonii Becca around EFB2_02185

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,319,065	+		EFB2_02184	0.41	+0.8
2,319,066	-		EFB2_02184	0.41	+0.1
2,319,066	-		EFB2_02184	0.41	-1.9
2,319,071	+		EFB2_02184	0.41	-1.2
2,319,071	+		EFB2_02184	0.41	+1.2
2,319,071	+		EFB2_02184	0.41	+0.3
2,319,071	+		EFB2_02184	0.41	-2.1
2,319,072	-		EFB2_02184	0.41	+2.4
2,319,109	+		EFB2_02184	0.44	-1.8
2,319,133	+		EFB2_02184	0.45	+0.1
2,319,133	+		EFB2_02184	0.45	+1.7
2,319,169	+		EFB2_02184	0.48	-0.6
2,319,170	-		EFB2_02184	0.48	+1.5
2,319,287	+		EFB2_02184	0.55	+1.8
2,319,287	+		EFB2_02184	0.55	+3.0
2,319,287	+		EFB2_02184	0.55	+1.2
2,319,287	+		EFB2_02184	0.55	+0.0
2,319,287	+		EFB2_02184	0.55	+1.5
2,319,287	+		EFB2_02184	0.55	-0.4
2,319,287	+		EFB2_02184	0.55	-0.6
2,319,287	+		EFB2_02184	0.55	-2.1
2,319,288	-		EFB2_02184	0.55	-0.3
2,319,288	-		EFB2_02184	0.55	+1.4
2,319,288	-		EFB2_02184	0.55	+0.8
2,319,288	-		EFB2_02184	0.55	+1.7
2,319,288	-		EFB2_02184	0.55	+2.7
2,319,288	-		EFB2_02184	0.55	+0.8
2,319,288	-		EFB2_02184	0.55	-2.6
2,319,288	-		EFB2_02184	0.55	+1.0
2,319,288	-		EFB2_02184	0.55	-1.8
2,319,303	+		EFB2_02184	0.56	-0.8
2,319,357	+		EFB2_02184	0.60	+1.2
2,319,357	+		EFB2_02184	0.60	+0.2
2,319,357	+		EFB2_02184	0.60	+2.8
2,319,357	+		EFB2_02184	0.60	-1.4
2,319,357	+		EFB2_02184	0.60	-0.4
2,319,358	-		EFB2_02184	0.60	+0.9
2,319,358	-		EFB2_02184	0.60	-0.5
2,319,358	-		EFB2_02184	0.60	+1.7
2,319,358	-		EFB2_02184	0.60	-0.6
2,319,373	+		EFB2_02184	0.61	-0.9
2,319,373	+		EFB2_02184	0.61	+0.4
2,319,373	+		EFB2_02184	0.61	-1.8
2,319,374	-		EFB2_02184	0.61	+2.3
2,319,435	+		EFB2_02184	0.65	+0.6
2,319,436	-		EFB2_02184	0.65	-0.5
2,319,471	+		EFB2_02184	0.67	+0.4
2,319,471	+		EFB2_02184	0.67	-1.2
2,319,471	+		EFB2_02184	0.67	-1.6
2,319,471	+		EFB2_02184	0.67	-0.0
2,319,471	+		EFB2_02184	0.67	+0.9
2,319,471	+		EFB2_02184	0.67	+0.0
2,319,471	+		EFB2_02184	0.67	+1.2
2,319,471	+		EFB2_02184	0.67	-0.5
2,319,472	-		EFB2_02184	0.67	-2.1
2,319,472	-		EFB2_02184	0.67	-1.5
2,319,472	-		EFB2_02184	0.67	-0.1
2,319,472	-		EFB2_02184	0.67	+1.5
2,319,472	-		EFB2_02184	0.67	+1.1
2,319,478	+		EFB2_02184	0.67	+0.8
2,319,478	+		EFB2_02184	0.67	+0.1
2,319,479	-		EFB2_02184	0.67	+2.4
2,319,479	-		EFB2_02184	0.67	-1.2
2,319,479	-		EFB2_02184	0.67	+1.4
2,319,547	+		EFB2_02184	0.72	+0.1
2,319,548	-		EFB2_02184	0.72	-0.4
2,319,642	+		EFB2_02184	0.78	+1.7
2,319,642	+		EFB2_02184	0.78	-1.1
2,319,643	-		EFB2_02184	0.78	-1.5
2,319,643	-		EFB2_02184	0.78	+1.3
2,319,643	-		EFB2_02184	0.78	-0.9
2,319,643	-		EFB2_02184	0.78	-0.4
2,319,724	+		EFB2_02184	0.83	-3.3
2,319,747	+		EFB2_02184	0.85	-2.4
2,319,747	+		EFB2_02184	0.85	-0.6
2,319,748	-		EFB2_02184	0.85	+1.7
2,319,748	-		EFB2_02184	0.85	+1.7
2,319,748	-		EFB2_02184	0.85	+1.1
2,319,888	+				+0.2
2,319,888	+				+0.4
2,319,889	-				+1.8
2,319,889	-				+3.4
2,319,983	+				+1.4
2,319,984	-				+0.2
2,319,995	+				+0.4
2,319,996	-				-2.4
2,320,003	+				-0.9
2,320,003	+				-0.5
2,320,003	+				+0.1
2,320,015	+				+1.0
2,320,015	+				-0.8
2,320,015	+				-0.3
2,320,015	+				+0.5
2,320,015	+				+1.8
2,320,015	+				-1.2
2,320,015	+				-0.3
2,320,015	+				-2.2
2,320,015	+				-0.1
2,320,015	+				+1.6
2,320,015	+				+0.2
2,320,015	+				+0.8
2,320,015	+				+0.7
2,320,015	+				+0.8
2,320,015	+				+2.4
2,320,015	+				-0.1
2,320,015	+				+0.7
2,320,015	+				-0.9
2,320,015	+				+0.2
2,320,015	+				+0.4
2,320,015	+				-0.1
2,320,015	+				+1.0
2,320,015	+				-1.0
2,320,015	+				+0.5
2,320,016	-				+0.1
2,320,016	-				-2.2
2,320,016	-				-0.8
2,320,016	-				-0.9
2,320,016	-				-0.2
2,320,016	-				-1.2
2,320,016	-				-0.7
2,320,016	-				-0.6
2,320,016	-				+0.6
2,320,016	-				+1.6
2,320,016	-				+2.6
2,320,016	-				-1.1
2,320,016	-				+2.2
2,320,016	-				-0.3
2,320,016	-				-1.3
2,320,016	-				+0.4
2,320,016	-				+0.1
2,320,016	-				-0.2
2,320,016	-				+1.1
2,320,016	-				-0.2
2,320,016	-				+1.1
2,320,024	+				+0.3
2,320,024	+				+0.7
2,320,076	+				+2.4
2,320,077	-				+2.2
2,320,077	-				+1.3
2,320,077	-				+1.1
2,320,077	-				-0.6
2,320,096	-				+0.4
2,320,096	-				-3.1
2,320,096	-				-1.1
2,320,101	+				+1.7
2,320,101	+				-0.2
2,320,101	+				-2.9
2,320,102	-				-1.7
2,320,102	-				-1.6
2,320,102	-				-2.2
2,320,102	-				-1.2
2,320,102	-				+0.8
2,320,102	-				+0.1
2,320,102	-				+0.1
2,320,102	-				-0.8
2,320,102	-				+2.0
2,320,114	+				+0.2
2,320,114	+				+0.4
2,320,115	-				-2.9
2,320,137	+				-1.6
2,320,137	+				+0.4
2,320,138	-				+0.4
2,320,138	-				-0.4
2,320,138	-				-0.6
2,320,183	+		EFB2_02185	0.12	-0.8
2,320,231	+		EFB2_02185	0.15	-2.1
2,320,247	+		EFB2_02185	0.16	+1.3
2,320,247	+		EFB2_02185	0.16	-2.8
2,320,247	+		EFB2_02185	0.16	+1.4
2,320,247	+		EFB2_02185	0.16	-0.6
2,320,247	+		EFB2_02185	0.16	+0.2
2,320,247	+		EFB2_02185	0.16	-2.9
2,320,248	-		EFB2_02185	0.16	-1.3
2,320,248	-		EFB2_02185	0.16	+3.4
2,320,248	-		EFB2_02185	0.16	-1.7
2,320,248	-		EFB2_02185	0.16	+1.9
2,320,248	-		EFB2_02185	0.16	-0.8
2,320,248	-		EFB2_02185	0.16	+0.8
2,320,248	-		EFB2_02185	0.16	-1.1
2,320,248	-		EFB2_02185	0.16	+0.1
2,320,248	-		EFB2_02185	0.16	-0.3
2,320,248	-		EFB2_02185	0.16	-0.3
2,320,248	-		EFB2_02185	0.16	+1.8
2,320,248	-		EFB2_02185	0.16	+2.3
2,320,248	-		EFB2_02185	0.16	-1.2
2,320,248	-		EFB2_02185	0.16	-1.5
2,320,248	-		EFB2_02185	0.16	+0.2
2,320,248	-		EFB2_02185	0.16	-0.5
2,320,248	-		EFB2_02185	0.16	+1.6
2,320,248	-		EFB2_02185	0.16	+2.4
2,320,249	+		EFB2_02185	0.16	-1.7
2,320,249	+		EFB2_02185	0.16	-0.3
2,320,249	+		EFB2_02185	0.16	-0.6
2,320,250	-		EFB2_02185	0.16	-0.2
2,320,250	-		EFB2_02185	0.16	-0.5
2,320,250	-		EFB2_02185	0.16	+1.2
2,320,250	-		EFB2_02185	0.16	+0.4
2,320,250	-		EFB2_02185	0.16	+0.9
2,320,250	-		EFB2_02185	0.16	+0.9
2,320,250	-		EFB2_02185	0.16	-2.1
2,320,258	+		EFB2_02185	0.17	+1.8
2,320,267	+		EFB2_02185	0.17	+1.5
2,320,268	-		EFB2_02185	0.17	+0.8
2,320,292	+		EFB2_02185	0.19	-2.0
2,320,292	+		EFB2_02185	0.19	+1.2
2,320,292	+		EFB2_02185	0.19	-0.1
2,320,293	-		EFB2_02185	0.19	-2.1
2,320,293	-		EFB2_02185	0.19	-1.5
2,320,293	-		EFB2_02185	0.19	-0.6
2,320,293	-		EFB2_02185	0.19	-1.5
2,320,293	-		EFB2_02185	0.19	+2.1
2,320,293	-		EFB2_02185	0.19	+1.1
2,320,318	+		EFB2_02185	0.21	+0.7
2,320,318	+		EFB2_02185	0.21	-1.3
2,320,318	+		EFB2_02185	0.21	+0.2
2,320,318	+		EFB2_02185	0.21	-2.6
2,320,318	+		EFB2_02185	0.21	+1.0
2,320,318	+		EFB2_02185	0.21	-1.9
2,320,318	+		EFB2_02185	0.21	-1.8
2,320,318	+		EFB2_02185	0.21	+2.3
2,320,318	+		EFB2_02185	0.21	+1.4
2,320,318	+		EFB2_02185	0.21	-0.4
2,320,318	+		EFB2_02185	0.21	-1.8
2,320,318	+		EFB2_02185	0.21	+0.5
2,320,319	-		EFB2_02185	0.21	+2.0
2,320,319	-		EFB2_02185	0.21	-1.0
2,320,319	-		EFB2_02185	0.21	+1.4
2,320,319	-		EFB2_02185	0.21	-1.1
2,320,319	-		EFB2_02185	0.21	-2.0
2,320,319	-		EFB2_02185	0.21	+1.8
2,320,319	-		EFB2_02185	0.21	+1.4
2,320,319	-		EFB2_02185	0.21	+0.7
2,320,319	-		EFB2_02185	0.21	-1.2
2,320,319	-		EFB2_02185	0.21	-1.1
2,320,319	-		EFB2_02185	0.21	-1.8
2,320,319	-		EFB2_02185	0.21	-0.1
2,320,360	+		EFB2_02185	0.23	-1.0
2,320,360	+		EFB2_02185	0.23	+0.7
2,320,361	-		EFB2_02185	0.23	+1.1
2,320,361	-		EFB2_02185	0.23	-0.0
2,320,361	-		EFB2_02185	0.23	+1.5
2,320,367	+		EFB2_02185	0.24	-0.3
2,320,367	+		EFB2_02185	0.24	+0.8
2,320,367	+		EFB2_02185	0.24	-0.4
2,320,367	+		EFB2_02185	0.24	+0.1
2,320,368	-		EFB2_02185	0.24	-0.4
2,320,368	-		EFB2_02185	0.24	-0.9
2,320,368	-		EFB2_02185	0.24	+1.7
2,320,368	-		EFB2_02185	0.24	+0.7
2,320,368	-		EFB2_02185	0.24	-0.5
2,320,368	-		EFB2_02185	0.24	+2.5
2,320,368	-		EFB2_02185	0.24	-0.2
2,320,368	-		EFB2_02185	0.24	-0.4
2,320,453	+		EFB2_02185	0.29	-0.7
2,320,453	+		EFB2_02185	0.29	-2.0
2,320,454	-		EFB2_02185	0.29	+2.3
2,320,478	+		EFB2_02185	0.31	-0.8
2,320,478	+		EFB2_02185	0.31	-0.4
2,320,479	-		EFB2_02185	0.31	-0.2
2,320,517	-		EFB2_02185	0.33	+1.3
2,320,537	+		EFB2_02185	0.34	-0.4
2,320,537	+		EFB2_02185	0.34	+0.4
2,320,538	-		EFB2_02185	0.34	-1.7
2,320,584	+		EFB2_02185	0.37	-0.6
2,320,584	+		EFB2_02185	0.37	+1.4
2,320,584	+		EFB2_02185	0.37	-1.1
2,320,584	+		EFB2_02185	0.37	-0.6
2,320,584	+		EFB2_02185	0.37	+1.0
2,320,584	+		EFB2_02185	0.37	+2.4
2,320,585	-		EFB2_02185	0.37	+0.6
2,320,604	+		EFB2_02185	0.38	+0.2
2,320,604	+		EFB2_02185	0.38	-0.4
2,320,604	+		EFB2_02185	0.38	-0.2
2,320,604	+		EFB2_02185	0.38	+1.1
2,320,604	+		EFB2_02185	0.38	+0.6
2,320,604	+		EFB2_02185	0.38	+0.1
2,320,605	-		EFB2_02185	0.39	-0.2
2,320,605	-		EFB2_02185	0.39	+0.6
2,320,605	-		EFB2_02185	0.39	+1.2
2,320,605	-		EFB2_02185	0.39	+0.8
2,320,630	+		EFB2_02185	0.40	+2.4
2,320,630	+		EFB2_02185	0.40	-3.0
2,320,631	-		EFB2_02185	0.40	-1.5
2,320,696	+		EFB2_02185	0.44	+1.8
2,320,696	+		EFB2_02185	0.44	+2.3
2,320,696	+		EFB2_02185	0.44	+0.8
2,320,696	+		EFB2_02185	0.44	-1.3
2,320,696	+		EFB2_02185	0.44	-0.2
2,320,696	+		EFB2_02185	0.44	+1.3
2,320,696	+		EFB2_02185	0.44	-0.3
2,320,697	-		EFB2_02185	0.44	+0.3
2,320,697	-		EFB2_02185	0.44	+0.2
2,320,697	-		EFB2_02185	0.44	-0.2
2,320,697	-		EFB2_02185	0.44	+2.1
2,320,697	-		EFB2_02185	0.44	+0.6
2,320,697	-		EFB2_02185	0.44	+0.4
2,320,697	-		EFB2_02185	0.44	-0.9
2,320,697	-		EFB2_02185	0.44	+1.0
2,320,717	+		EFB2_02185	0.46	-1.5
2,320,817	-		EFB2_02185	0.52	-0.4
2,320,817	-		EFB2_02185	0.52	-2.0
2,320,818	+		EFB2_02185	0.52	-0.1
2,320,819	-		EFB2_02185	0.52	-0.6
2,320,819	-		EFB2_02185	0.52	-2.3
2,320,819	-		EFB2_02185	0.52	-1.8
2,320,819	-		EFB2_02185	0.52	-1.7
2,320,819	-		EFB2_02185	0.52	+0.1
2,320,819	-		EFB2_02185	0.52	-0.6
2,320,819	-		EFB2_02185	0.52	+1.0
2,320,835	+		EFB2_02185	0.53	-1.5
2,320,835	+		EFB2_02185	0.53	+0.4
2,320,835	+		EFB2_02185	0.53	+0.6
2,320,835	+		EFB2_02185	0.53	+0.8
2,320,835	+		EFB2_02185	0.53	-0.3
2,320,835	+		EFB2_02185	0.53	+1.1
2,320,835	+		EFB2_02185	0.53	-1.4
2,320,835	+		EFB2_02185	0.53	-0.1
2,320,836	-		EFB2_02185	0.53	-1.3
2,320,836	-		EFB2_02185	0.53	+0.8
2,320,854	-		EFB2_02185	0.54	+0.7
2,320,854	-		EFB2_02185	0.54	+1.4
2,320,854	-		EFB2_02185	0.54	-0.1
2,320,869	+		EFB2_02185	0.55	+2.0
2,320,869	+		EFB2_02185	0.55	-2.2
2,320,869	+		EFB2_02185	0.55	+0.2
2,320,869	+		EFB2_02185	0.55	-0.4
2,320,869	+		EFB2_02185	0.55	+0.2
2,320,869	+		EFB2_02185	0.55	-0.8
2,320,869	+		EFB2_02185	0.55	-0.6
2,320,869	+		EFB2_02185	0.55	+1.3
2,320,869	+		EFB2_02185	0.55	+0.2
2,320,870	-		EFB2_02185	0.55	+0.8
2,320,870	-		EFB2_02185	0.55	+2.3
2,320,870	-		EFB2_02185	0.55	+0.2
2,320,870	-		EFB2_02185	0.55	-0.2
2,320,870	-		EFB2_02185	0.55	+0.0
2,320,915	+		EFB2_02185	0.58	-3.0
2,320,915	+		EFB2_02185	0.58	-1.7
2,320,916	-		EFB2_02185	0.58	-2.4
2,320,916	-		EFB2_02185	0.58	+2.2
2,320,944	+		EFB2_02185	0.60	-0.9
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