Strain Fitness in Escherichia fergusonii Becca around EFB2_02119

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,264,194	-		EFB2_02117	0.71	-1.1
2,264,308	-				-1.5
2,264,358	+				+1.4
2,264,359	-				-3.3
2,264,359	-				+1.4
2,264,359	-				-0.2
2,264,359	-				-2.3
2,264,359	-				+1.4
2,264,364	+				-0.6
2,264,364	+				-1.4
2,264,364	+				-0.1
2,264,364	+				-2.2
2,264,365	-				+2.4
2,264,365	-				+0.3
2,264,380	-				+1.6
2,264,380	-				+2.9
2,264,380	-				-1.8
2,264,380	-				-1.4
2,264,424	+				-3.0
2,264,424	+				-1.2
2,264,424	+				+0.9
2,264,424	+				+0.7
2,264,424	+				+0.6
2,264,425	-				+1.5
2,264,427	+				+0.4
2,264,427	+				-0.2
2,264,447	+				+1.0
2,264,492	+		EFB2_02118	0.12	-2.7
2,264,503	-		EFB2_02118	0.14	-0.6
2,264,538	-		EFB2_02118	0.18	-1.0
2,264,556	+		EFB2_02118	0.20	-0.3
2,264,585	+		EFB2_02118	0.24	+1.0
2,264,585	+		EFB2_02118	0.24	-0.9
2,264,585	+		EFB2_02118	0.24	+0.4
2,264,586	-		EFB2_02118	0.24	+0.7
2,264,586	-		EFB2_02118	0.24	-1.2
2,264,586	-		EFB2_02118	0.24	-1.0
2,264,586	-		EFB2_02118	0.24	-1.4
2,264,586	-		EFB2_02118	0.24	+1.6
2,264,586	-		EFB2_02118	0.24	+1.8
2,264,601	+		EFB2_02118	0.26	-0.8
2,264,602	-		EFB2_02118	0.26	-0.6
2,264,673	+		EFB2_02118	0.35	-1.1
2,264,826	+		EFB2_02118	0.55	-2.2
2,264,826	+		EFB2_02118	0.55	+1.3
2,264,826	+		EFB2_02118	0.55	-1.3
2,264,826	+		EFB2_02118	0.55	-1.1
2,264,826	+		EFB2_02118	0.55	-2.7
2,264,826	+		EFB2_02118	0.55	+1.5
2,264,826	+		EFB2_02118	0.55	-2.8
2,264,826	+		EFB2_02118	0.55	-1.2
2,264,826	+		EFB2_02118	0.55	-0.6
2,264,827	-		EFB2_02118	0.55	+2.5
2,264,827	-		EFB2_02118	0.55	-1.6
2,264,827	-		EFB2_02118	0.55	+1.0
2,264,827	-		EFB2_02118	0.55	+0.8
2,264,828	+		EFB2_02118	0.55	-0.4
2,264,828	+		EFB2_02118	0.55	-3.1
2,264,828	+		EFB2_02118	0.55	+2.1
2,264,828	+		EFB2_02118	0.55	+1.7
2,264,828	+		EFB2_02118	0.55	-0.4
2,264,828	+		EFB2_02118	0.55	-2.3
2,264,828	+		EFB2_02118	0.55	-2.6
2,264,828	+		EFB2_02118	0.55	-2.6
2,264,828	+		EFB2_02118	0.55	-2.1
2,264,828	+		EFB2_02118	0.55	+0.6
2,264,828	+		EFB2_02118	0.55	-2.0
2,264,828	+		EFB2_02118	0.55	+0.1
2,264,828	+		EFB2_02118	0.55	+0.8
2,264,828	+		EFB2_02118	0.55	+0.8
2,264,828	+		EFB2_02118	0.55	-0.6
2,264,828	+		EFB2_02118	0.55	+1.1
2,264,828	+		EFB2_02118	0.55	-0.4
2,264,828	+		EFB2_02118	0.55	+0.0
2,264,828	+		EFB2_02118	0.55	-2.9
2,264,828	+		EFB2_02118	0.55	-0.2
2,264,828	+		EFB2_02118	0.55	+1.1
2,264,828	+		EFB2_02118	0.55	-2.8
2,264,828	+		EFB2_02118	0.55	+2.5
2,264,828	+		EFB2_02118	0.55	-2.5
2,264,828	+		EFB2_02118	0.55	-2.9
2,264,828	+		EFB2_02118	0.55	-1.6
2,264,828	+		EFB2_02118	0.55	+0.2
2,264,828	+		EFB2_02118	0.55	-2.7
2,264,828	+		EFB2_02118	0.55	-0.6
2,264,829	-		EFB2_02118	0.55	+0.7
2,264,829	-		EFB2_02118	0.55	+1.5
2,264,829	-		EFB2_02118	0.55	+2.1
2,264,829	-		EFB2_02118	0.55	-2.0
2,264,829	-		EFB2_02118	0.55	-1.1
2,264,829	-		EFB2_02118	0.55	-1.7
2,264,829	-		EFB2_02118	0.55	+1.4
2,264,829	-		EFB2_02118	0.55	-2.6
2,264,829	-		EFB2_02118	0.55	+0.5
2,264,829	-		EFB2_02118	0.55	+2.4
2,264,829	-		EFB2_02118	0.55	+0.7
2,264,829	-		EFB2_02118	0.55	+0.6
2,264,829	-		EFB2_02118	0.55	+1.9
2,264,829	-		EFB2_02118	0.55	-2.0
2,264,829	-		EFB2_02118	0.55	+1.2
2,264,829	-		EFB2_02118	0.55	+3.6
2,264,832	+		EFB2_02118	0.55	+1.0
2,264,832	+		EFB2_02118	0.55	+0.4
2,264,833	-		EFB2_02118	0.56	+1.2
2,264,833	-		EFB2_02118	0.56	+0.8
2,264,833	-		EFB2_02118	0.56	-0.5
2,264,846	+		EFB2_02118	0.57	+0.6
2,264,847	-		EFB2_02118	0.57	-1.7
2,264,895	+		EFB2_02118	0.63	+1.4
2,264,896	-		EFB2_02118	0.63	+0.6
2,265,036	+		EFB2_02118	0.81	+3.5
2,265,036	+		EFB2_02118	0.81	-1.4
2,265,036	+		EFB2_02118	0.81	+1.0
2,265,036	+		EFB2_02118	0.81	+2.9
2,265,037	-		EFB2_02118	0.81	-1.6
2,265,076	+		EFB2_02118	0.86	-0.2
2,265,076	+		EFB2_02118	0.86	-1.2
2,265,132	+				+0.8
2,265,132	+				+0.3
2,265,133	-				+0.8
2,265,136	-				-2.2
2,265,136	-				+0.3
2,265,198	+				+0.2
2,265,251	+				-1.1
2,265,251	+				+0.2
2,265,251	+				-0.5
2,265,251	+				+0.9
2,265,251	+				+0.1
2,265,251	+				+1.6
2,265,251	+				-1.5
2,265,251	+				+2.4
2,265,251	+				-0.8
2,265,252	-				-0.1
2,265,252	-				-0.2
2,265,252	-				-0.3
2,265,252	-				+1.6
2,265,252	-				+0.9
2,265,252	-				-2.9
2,265,252	-				+1.4
2,265,315	+		EFB2_02119	0.17	-0.4
2,265,316	-		EFB2_02119	0.17	+1.6
2,265,415	+		EFB2_02119	0.30	+1.8
2,265,415	+		EFB2_02119	0.30	-0.0
2,265,415	+		EFB2_02119	0.30	+1.4
2,265,539	+		EFB2_02119	0.47	+0.4
2,265,539	+		EFB2_02119	0.47	-2.4
2,265,539	+		EFB2_02119	0.47	+0.4
2,265,540	-		EFB2_02119	0.47	-0.1
2,265,609	+		EFB2_02119	0.56	-3.0
2,265,609	+		EFB2_02119	0.56	-2.2
2,265,610	-		EFB2_02119	0.56	+0.3
2,265,610	-		EFB2_02119	0.56	-1.6
2,265,610	-		EFB2_02119	0.56	+0.6
2,265,610	-		EFB2_02119	0.56	+1.4
2,265,610	-		EFB2_02119	0.56	+0.5
2,265,610	-		EFB2_02119	0.56	+1.7
2,265,610	-		EFB2_02119	0.56	-3.0
2,265,610	-		EFB2_02119	0.56	+0.1
2,265,610	-		EFB2_02119	0.56	+0.7
2,265,631	+		EFB2_02119	0.59	-0.7
2,265,631	+		EFB2_02119	0.59	-3.0
2,265,631	+		EFB2_02119	0.59	-1.4
2,265,632	-		EFB2_02119	0.59	-0.3
2,265,632	-		EFB2_02119	0.59	-0.2
2,265,632	-		EFB2_02119	0.59	-0.3
2,265,632	-		EFB2_02119	0.59	-1.2
2,265,753	+		EFB2_02119	0.75	-1.2
2,265,780	+		EFB2_02119	0.79	-2.8
2,265,808	+		EFB2_02119	0.83	+0.8
2,265,808	+		EFB2_02119	0.83	-2.1
2,265,808	+		EFB2_02119	0.83	-0.9
2,265,808	+		EFB2_02119	0.83	-2.3
2,265,808	+		EFB2_02119	0.83	-0.8
2,265,808	+		EFB2_02119	0.83	-2.4
2,265,808	+		EFB2_02119	0.83	-1.1
2,265,808	+		EFB2_02119	0.83	-0.8
2,265,808	+		EFB2_02119	0.83	-2.2
2,265,809	-		EFB2_02119	0.83	+0.7
2,265,809	-		EFB2_02119	0.83	-2.2
2,265,809	-		EFB2_02119	0.83	-1.8
2,265,809	-		EFB2_02119	0.83	+0.8
2,265,809	-		EFB2_02119	0.83	+0.0
2,265,809	-		EFB2_02119	0.83	+1.4
2,265,809	-		EFB2_02119	0.83	+2.4
2,265,809	-		EFB2_02119	0.83	-1.1
2,265,809	-		EFB2_02119	0.83	-0.8
2,265,843	+		EFB2_02119	0.87	-2.2
2,265,844	-		EFB2_02119	0.88	-1.9
2,265,844	-		EFB2_02119	0.88	+0.4
2,265,885	+				+1.1
2,265,886	-				-2.5
2,266,008	+				-2.0
2,266,008	+				-0.6
2,266,008	+				-1.9
2,266,008	+				+0.2
2,266,008	+				+0.1
2,266,008	+				-0.1
2,266,008	+				+0.2
2,266,008	+				+0.3
2,266,008	+				+1.4
2,266,008	+				-0.1
2,266,008	+				-1.5
2,266,008	+				-0.3
2,266,008	+				-0.6
2,266,008	+				-3.1
2,266,009	-				-0.4
2,266,009	-				-1.3
2,266,009	-				-2.0
2,266,030	+				+0.8
2,266,031	-				-2.3
2,266,059	+		EFB2_02120	0.14	-0.5
2,266,059	+		EFB2_02120	0.14	+0.8
2,266,059	+		EFB2_02120	0.14	-2.4
2,266,059	+		EFB2_02120	0.14	+1.0
2,266,059	+		EFB2_02120	0.14	-2.3
2,266,059	+		EFB2_02120	0.14	-1.3
2,266,060	-		EFB2_02120	0.14	-2.0
2,266,060	-		EFB2_02120	0.14	-2.3
2,266,060	-		EFB2_02120	0.14	+0.2
2,266,060	-		EFB2_02120	0.14	-1.0
2,266,060	-		EFB2_02120	0.14	-3.0
2,266,090	+		EFB2_02120	0.18	-2.8
2,266,090	+		EFB2_02120	0.18	-0.6
2,266,126	+		EFB2_02120	0.23	+0.7
2,266,126	+		EFB2_02120	0.23	-2.9
2,266,126	+		EFB2_02120	0.23	-0.8
2,266,163	-		EFB2_02120	0.28	+1.7
2,266,186	+		EFB2_02120	0.31	-0.6
2,266,186	+		EFB2_02120	0.31	+0.4
2,266,187	-		EFB2_02120	0.31	-0.7
2,266,204	+		EFB2_02120	0.34	-1.7
2,266,204	+		EFB2_02120	0.34	-0.6
2,266,228	+		EFB2_02120	0.37	-2.9
2,266,243	+		EFB2_02120	0.39	-0.3
2,266,243	+		EFB2_02120	0.39	+0.8
2,266,303	+		EFB2_02120	0.47	+1.0
2,266,315	+		EFB2_02120	0.49	-0.4
2,266,325	+		EFB2_02120	0.50	+0.8
2,266,332	+		EFB2_02120	0.51	-1.3
2,266,342	+		EFB2_02120	0.53	-1.5
2,266,342	+		EFB2_02120	0.53	+2.7
2,266,347	+		EFB2_02120	0.53	+2.4
2,266,347	+		EFB2_02120	0.53	+1.3
2,266,348	-		EFB2_02120	0.53	+0.5
2,266,374	+		EFB2_02120	0.57	-0.7
2,266,390	+		EFB2_02120	0.59	+1.5
2,266,390	+		EFB2_02120	0.59	+1.2
2,266,391	-		EFB2_02120	0.59	+1.3
2,266,422	+		EFB2_02120	0.64	+1.4
2,266,428	+		EFB2_02120	0.64	-0.4
2,266,428	+		EFB2_02120	0.64	+0.9
2,266,453	+		EFB2_02120	0.68	-2.3
2,266,453	+		EFB2_02120	0.68	-0.5
2,266,453	+		EFB2_02120	0.68	-0.8
2,266,453	+		EFB2_02120	0.68	-1.3
2,266,453	+		EFB2_02120	0.68	-0.1
2,266,453	+		EFB2_02120	0.68	-0.3
2,266,453	+		EFB2_02120	0.68	-0.2
2,266,453	+		EFB2_02120	0.68	-1.0
2,266,454	-		EFB2_02120	0.68	+0.4
2,266,456	+		EFB2_02120	0.68	-0.4
2,266,456	+		EFB2_02120	0.68	-1.7
2,266,457	-		EFB2_02120	0.68	-0.8
2,266,457	-		EFB2_02120	0.68	+0.6
2,266,530	+		EFB2_02120	0.78	-0.1
2,266,543	+		EFB2_02120	0.80	+0.6
2,266,543	+		EFB2_02120	0.80	-1.7
2,266,543	+		EFB2_02120	0.80	+1.5
2,266,544	-		EFB2_02120	0.80	-0.2
2,266,577	+		EFB2_02120	0.85	-0.1
2,266,577	+		EFB2_02120	0.85	+1.0
2,266,577	+		EFB2_02120	0.85	-1.6
2,266,577	+		EFB2_02120	0.85	+0.8
2,266,577	+		EFB2_02120	0.85	-0.4
2,266,578	-		EFB2_02120	0.85	+0.6
2,266,578	-		EFB2_02120	0.85	+1.4
2,266,636	+				+2.3
2,266,637	-				-2.3
2,266,637	-				+2.1
2,266,669	+				-1.6
2,266,669	+				-0.4
2,266,669	+				+0.4
2,266,669	+				-0.5
2,266,669	+				-0.2
2,266,669	+				+0.9
2,266,669	+				-2.2
2,266,669	+				-2.9
2,266,669	+				-2.4
2,266,670	-				-1.7
2,266,670	-				-0.1
2,266,670	-				+1.9
2,266,670	-				-1.6
2,266,670	-				-0.3
2,266,670	-				+0.2
2,266,701	+				-3.7
2,266,712	+				+1.8
2,266,712	+				-0.6
2,266,713	-				+1.0
2,266,713	-				-1.1
2,266,713	-				+0.9
2,266,716	+				+2.1
2,266,717	-				-1.2
2,266,717	-				-3.5
2,266,717	-				-1.3
2,266,829	+		EFB2_02121	0.30	-1.5
2,266,829	+		EFB2_02121	0.30	+0.1
2,266,830	-		EFB2_02121	0.30	+1.4
2,266,868	+		EFB2_02121	0.39	+0.8
2,266,868	+		EFB2_02121	0.39	-0.3
2,266,868	+		EFB2_02121	0.39	-0.7
2,266,868	+		EFB2_02121	0.39	+0.1
2,266,868	+		EFB2_02121	0.39	-2.6
2,266,868	+		EFB2_02121	0.39	-1.0
2,266,868	+		EFB2_02121	0.39	-0.7
2,266,868	+		EFB2_02121	0.39	+0.6
2,266,868	+		EFB2_02121	0.39	-0.1
2,266,868	+		EFB2_02121	0.39	+2.8
2,266,868	+		EFB2_02121	0.39	+0.0
2,266,868	+		EFB2_02121	0.39	-1.2
2,266,868	+		EFB2_02121	0.39	-0.2
2,266,868	+		EFB2_02121	0.39	-0.6
2,266,868	+		EFB2_02121	0.39	+0.5
2,266,868	+		EFB2_02121	0.39	-2.2
2,266,868	+		EFB2_02121	0.39	-1.6
2,266,868	+		EFB2_02121	0.39	-2.0
2,266,868	+		EFB2_02121	0.39	-0.8
2,266,868	+		EFB2_02121	0.39	+0.0
2,266,868	+		EFB2_02121	0.39	+1.5
2,266,868	+		EFB2_02121	0.39	+2.4
2,266,868	+		EFB2_02121	0.39	-1.4
2,266,868	+		EFB2_02121	0.39	+0.4
2,266,868	+		EFB2_02121	0.39	+0.0
2,266,868	+		EFB2_02121	0.39	-2.9
2,266,868	+		EFB2_02121	0.39	-3.2
2,266,868	+		EFB2_02121	0.39	-0.6
2,266,868	+		EFB2_02121	0.39	+0.8
2,266,868	+		EFB2_02121	0.39	+0.4
2,266,868	+		EFB2_02121	0.39	-1.8
2,266,868	+		EFB2_02121	0.39	+0.2
2,266,868	+		EFB2_02121	0.39	+0.1
2,266,868	+		EFB2_02121	0.39	+0.2
2,266,868	+		EFB2_02121	0.39	-2.4
2,266,868	+		EFB2_02121	0.39	-1.5
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