Strain Fitness in Escherichia fergusonii Becca around EFB2_02102

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,252,730	+		EFB2_02100	0.68	-2.1
2,252,730	+		EFB2_02100	0.68	+1.1
2,252,730	+		EFB2_02100	0.68	-0.5
2,252,731	-		EFB2_02100	0.68	-1.6
2,252,731	-		EFB2_02100	0.68	+0.0
2,252,731	-		EFB2_02100	0.68	+0.9
2,252,731	-		EFB2_02100	0.68	+3.9
2,252,731	-		EFB2_02100	0.68	-0.4
2,252,731	-		EFB2_02100	0.68	+0.0
2,252,733	+		EFB2_02100	0.68	+0.0
2,252,733	+		EFB2_02100	0.68	+0.8
2,252,734	-		EFB2_02100	0.68	+0.8
2,252,765	-		EFB2_02100	0.73	+1.4
2,252,815	+		EFB2_02100	0.80	+1.4
2,252,815	+		EFB2_02100	0.80	-0.8
2,252,815	+		EFB2_02100	0.80	-2.0
2,252,815	+		EFB2_02100	0.80	-1.9
2,252,815	+		EFB2_02100	0.80	-1.0
2,252,816	-		EFB2_02100	0.81	+0.2
2,252,816	-		EFB2_02100	0.81	+1.4
2,252,816	-		EFB2_02100	0.81	+0.8
2,252,816	-		EFB2_02100	0.81	+1.4
2,252,818	+		EFB2_02100	0.81	-0.4
2,252,818	+		EFB2_02100	0.81	-2.4
2,252,818	+		EFB2_02100	0.81	+2.0
2,252,818	+		EFB2_02100	0.81	+1.8
2,252,819	-		EFB2_02100	0.81	+3.0
2,252,819	-		EFB2_02100	0.81	+0.6
2,252,819	-		EFB2_02100	0.81	+0.9
2,252,819	-		EFB2_02100	0.81	-1.4
2,252,819	-		EFB2_02100	0.81	-1.2
2,252,819	-		EFB2_02100	0.81	-1.1
2,252,819	-		EFB2_02100	0.81	+1.9
2,252,895	-				+2.1
2,252,985	-				-0.8
2,252,985	-				-2.0
2,253,027	+				+0.6
2,253,027	+				-1.8
2,253,027	+				-0.1
2,253,075	+		EFB2_02101	0.16	-1.7
2,253,075	+		EFB2_02101	0.16	-2.0
2,253,076	-		EFB2_02101	0.17	+1.6
2,253,076	-		EFB2_02101	0.17	-1.0
2,253,086	+		EFB2_02101	0.18	-0.8
2,253,086	+		EFB2_02101	0.18	+0.5
2,253,086	+		EFB2_02101	0.18	-0.4
2,253,087	-		EFB2_02101	0.18	-2.2
2,253,141	+		EFB2_02101	0.26	+1.3
2,253,142	-		EFB2_02101	0.27	+0.7
2,253,195	-		EFB2_02101	0.35	-1.0
2,253,224	+		EFB2_02101	0.39	-0.8
2,253,224	+		EFB2_02101	0.39	-0.8
2,253,224	+		EFB2_02101	0.39	-2.6
2,253,224	+		EFB2_02101	0.39	-2.2
2,253,224	+		EFB2_02101	0.39	-1.8
2,253,225	-		EFB2_02101	0.39	+1.7
2,253,225	-		EFB2_02101	0.39	-1.3
2,253,225	-		EFB2_02101	0.39	-0.2
2,253,225	-		EFB2_02101	0.39	-3.2
2,253,225	-		EFB2_02101	0.39	-0.8
2,253,225	-		EFB2_02101	0.39	-2.9
2,253,286	+		EFB2_02101	0.49	-1.0
2,253,286	+		EFB2_02101	0.49	-0.9
2,253,286	+		EFB2_02101	0.49	+2.4
2,253,286	+		EFB2_02101	0.49	-1.4
2,253,287	-		EFB2_02101	0.49	-0.7
2,253,287	-		EFB2_02101	0.49	+0.9
2,253,298	+		EFB2_02101	0.50	-1.4
2,253,298	+		EFB2_02101	0.50	+1.9
2,253,298	+		EFB2_02101	0.50	-2.3
2,253,299	-		EFB2_02101	0.51	-2.4
2,253,299	-		EFB2_02101	0.51	+1.3
2,253,299	-		EFB2_02101	0.51	+2.4
2,253,299	-		EFB2_02101	0.51	+0.6
2,253,299	-		EFB2_02101	0.51	+1.0
2,253,299	-		EFB2_02101	0.51	+0.5
2,253,299	-		EFB2_02101	0.51	-1.1
2,253,299	-		EFB2_02101	0.51	+0.9
2,253,348	-		EFB2_02101	0.58	-2.3
2,253,359	+		EFB2_02101	0.60	-0.1
2,253,359	+		EFB2_02101	0.60	+0.0
2,253,359	+		EFB2_02101	0.60	-1.0
2,253,359	+		EFB2_02101	0.60	-0.6
2,253,359	+		EFB2_02101	0.60	-1.1
2,253,359	+		EFB2_02101	0.60	+0.2
2,253,360	-		EFB2_02101	0.60	+1.2
2,253,360	-		EFB2_02101	0.60	+1.8
2,253,360	-		EFB2_02101	0.60	+1.7
2,253,360	-		EFB2_02101	0.60	+2.7
2,253,360	-		EFB2_02101	0.60	+1.0
2,253,360	-		EFB2_02101	0.60	-0.6
2,253,360	-		EFB2_02101	0.60	+2.1
2,253,361	+		EFB2_02101	0.60	-1.0
2,253,361	+		EFB2_02101	0.60	-2.1
2,253,361	+		EFB2_02101	0.60	-0.0
2,253,361	+		EFB2_02101	0.60	-0.8
2,253,361	+		EFB2_02101	0.60	-2.0
2,253,361	+		EFB2_02101	0.60	+0.7
2,253,362	-		EFB2_02101	0.60	-1.3
2,253,362	-		EFB2_02101	0.60	+0.4
2,253,412	+		EFB2_02101	0.68	-1.1
2,253,412	+		EFB2_02101	0.68	-2.5
2,253,412	+		EFB2_02101	0.68	-0.8
2,253,413	-		EFB2_02101	0.68	+0.0
2,253,413	-		EFB2_02101	0.68	+1.7
2,253,426	+		EFB2_02101	0.70	+1.9
2,253,426	+		EFB2_02101	0.70	+0.6
2,253,426	+		EFB2_02101	0.70	+0.1
2,253,426	+		EFB2_02101	0.70	+0.5
2,253,426	+		EFB2_02101	0.70	-0.1
2,253,426	+		EFB2_02101	0.70	-1.1
2,253,426	+		EFB2_02101	0.70	-1.0
2,253,426	+		EFB2_02101	0.70	+2.4
2,253,426	+		EFB2_02101	0.70	-1.5
2,253,427	-		EFB2_02101	0.70	-1.7
2,253,427	-		EFB2_02101	0.70	-1.1
2,253,427	-		EFB2_02101	0.70	+0.5
2,253,427	-		EFB2_02101	0.70	-2.7
2,253,427	-		EFB2_02101	0.70	-1.6
2,253,427	-		EFB2_02101	0.70	+0.5
2,253,429	+		EFB2_02101	0.70	+1.3
2,253,429	+		EFB2_02101	0.70	+0.5
2,253,429	+		EFB2_02101	0.70	-2.9
2,253,430	-		EFB2_02101	0.70	+1.4
2,253,504	+		EFB2_02101	0.82	-2.7
2,253,558	+				+1.3
2,253,558	+				+1.5
2,253,558	+				+0.8
2,253,558	+				-1.6
2,253,558	+				-0.0
2,253,558	+				-1.0
2,253,559	-				-0.4
2,253,559	-				-2.0
2,253,559	-				+2.0
2,253,559	-				+1.0
2,253,559	-				-3.7
2,253,559	-				+0.7
2,253,559	-				-1.6
2,253,559	-				+0.4
2,253,559	-				-0.7
2,253,559	-				-0.4
2,253,559	-				-1.8
2,253,559	-				-0.8
2,253,559	-				-2.8
2,253,559	-				+0.0
2,253,592	+				-1.0
2,253,592	+				-0.2
2,253,593	-				-2.4
2,253,593	-				-0.2
2,253,623	+				+1.5
2,253,623	+				-2.0
2,253,623	+				-0.6
2,253,623	+				-1.3
2,253,623	+				-2.1
2,253,623	+				+0.3
2,253,623	+				-0.8
2,253,623	+				+2.7
2,253,624	-				-2.0
2,253,624	-				-3.3
2,253,624	-				+0.0
2,253,624	-				+0.5
2,253,624	-				+1.4
2,253,624	-				-0.3
2,253,624	-				-2.2
2,253,624	-				+0.0
2,253,624	-				+0.2
2,253,624	-				-1.4
2,253,655	-				-0.8
2,253,674	+				-1.2
2,253,674	+				+1.5
2,253,681	-				+1.4
2,253,685	+				-2.2
2,253,685	+				+0.4
2,253,686	-				+1.3
2,253,700	-				-1.6
2,253,700	-				+0.5
2,253,713	+				-1.0
2,253,713	+				-1.2
2,253,713	+				+0.2
2,253,713	+				+2.3
2,253,713	+				-1.1
2,253,713	+				+0.8
2,253,713	+				+2.5
2,253,713	+				-2.0
2,253,713	+				+4.7
2,253,713	+				-2.1
2,253,713	+				-0.1
2,253,713	+				-1.3
2,253,713	+				-1.7
2,253,714	-				-1.3
2,253,714	-				+0.3
2,253,714	-				+0.0
2,253,714	-				-1.2
2,253,714	-				-1.4
2,253,714	-				+0.9
2,253,714	-				+0.8
2,253,714	-				+0.4
2,253,714	-				+0.9
2,253,714	-				+0.8
2,253,717	+				+0.0
2,253,717	+				+2.0
2,253,717	+				+1.5
2,253,718	-				-1.6
2,253,718	-				-1.5
2,253,718	-				+2.1
2,253,718	-				+0.4
2,253,720	-				-2.1
2,253,731	-				+0.6
2,253,731	-				-0.8
2,253,731	-				-0.2
2,253,745	-				+0.5
2,253,787	+		EFB2_02102	0.27	+0.0
2,253,859	+		EFB2_02102	0.58	+0.2
2,253,859	+		EFB2_02102	0.58	-0.8
2,253,859	+		EFB2_02102	0.58	-2.2
2,253,859	+		EFB2_02102	0.58	-0.8
2,253,860	-		EFB2_02102	0.58	-1.0
2,253,860	-		EFB2_02102	0.58	+0.7
2,253,860	-		EFB2_02102	0.58	+0.5
2,253,860	-		EFB2_02102	0.58	+1.2
2,253,860	-		EFB2_02102	0.58	+3.6
2,253,861	-		EFB2_02102	0.59	-2.0
2,253,864	+		EFB2_02102	0.60	-0.5
2,253,864	+		EFB2_02102	0.60	+1.0
2,253,864	+		EFB2_02102	0.60	-2.0
2,253,864	+		EFB2_02102	0.60	+1.4
2,253,864	+		EFB2_02102	0.60	-1.0
2,253,864	+		EFB2_02102	0.60	-0.0
2,253,864	+		EFB2_02102	0.60	-1.7
2,253,865	-		EFB2_02102	0.61	+0.5
2,253,865	-		EFB2_02102	0.61	-1.2
2,253,865	-		EFB2_02102	0.61	-0.4
2,253,865	-		EFB2_02102	0.61	-1.3
2,253,874	+		EFB2_02102	0.65	+2.2
2,253,874	+		EFB2_02102	0.65	-2.7
2,253,874	+		EFB2_02102	0.65	-1.2
2,253,874	+		EFB2_02102	0.65	-1.3
2,253,875	-		EFB2_02102	0.65	+2.4
2,253,959	+				-1.6
2,253,959	+				+1.0
2,253,960	-				-1.1
2,253,960	-				+1.7
2,253,960	-				+0.5
2,253,988	+				+0.2
2,253,989	-				-0.6
2,253,991	+				+1.5
2,253,991	+				+0.4
2,253,991	+				+0.6
2,253,991	+				+2.2
2,253,991	+				-0.3
2,253,991	+				+0.2
2,253,991	+				+2.0
2,253,991	+				-0.2
2,253,992	-				+1.6
2,253,992	-				+1.4
2,253,992	-				+1.1
2,253,992	-				+2.4
2,253,992	-				+2.4
2,253,992	-				+0.0
2,253,992	-				+1.1
2,254,053	+				-0.5
2,254,053	+				+0.6
2,254,053	+				-1.6
2,254,054	-				+0.2
2,254,063	-				-1.9
2,254,086	+				-1.2
2,254,086	+				+0.9
2,254,087	-				+0.5
2,254,090	+				-0.4
2,254,090	+				-1.4
2,254,090	+				-0.6
2,254,090	+				+0.9
2,254,090	+				+1.6
2,254,090	+				-1.6
2,254,090	+				+1.8
2,254,090	+				+1.4
2,254,090	+				+1.4
2,254,090	+				+0.1
2,254,090	+				+0.0
2,254,090	+				+2.8
2,254,090	+				+0.5
2,254,091	-				+2.2
2,254,091	-				+2.1
2,254,091	-				-1.2
2,254,091	-				+0.8
2,254,091	-				+1.0
2,254,093	+				-1.3
2,254,094	-				-0.5
2,254,183	-		EFB2_02103	0.24	+0.2
2,254,183	-		EFB2_02103	0.24	+0.9
2,254,183	-		EFB2_02103	0.24	+0.7
2,254,193	+		EFB2_02103	0.26	+1.6
2,254,193	+		EFB2_02103	0.26	+0.1
2,254,193	+		EFB2_02103	0.26	+0.9
2,254,194	-		EFB2_02103	0.27	-3.3
2,254,242	+		EFB2_02103	0.39	-4.5
2,254,242	+		EFB2_02103	0.39	-2.5
2,254,242	+		EFB2_02103	0.39	-3.4
2,254,243	-		EFB2_02103	0.40	+1.4
2,254,310	-		EFB2_02103	0.58	-2.3
2,254,394	+		EFB2_02103	0.80	-0.5
2,254,394	+		EFB2_02103	0.80	-2.0
2,254,394	+		EFB2_02103	0.80	+0.7
2,254,394	+		EFB2_02103	0.80	-1.5
2,254,394	+		EFB2_02103	0.80	-0.1
2,254,394	+		EFB2_02103	0.80	-1.4
2,254,394	+		EFB2_02103	0.80	+0.4
2,254,394	+		EFB2_02103	0.80	-1.1
2,254,394	+		EFB2_02103	0.80	-0.1
2,254,395	-		EFB2_02103	0.80	-0.7
2,254,395	-		EFB2_02103	0.80	+0.1
2,254,395	-		EFB2_02103	0.80	-2.6
2,254,395	-		EFB2_02103	0.80	-0.2
2,254,395	-		EFB2_02103	0.80	-1.0
2,254,395	-		EFB2_02103	0.80	+0.6
2,254,395	-		EFB2_02103	0.80	-1.5
2,254,395	-		EFB2_02103	0.80	+2.7
2,254,395	-		EFB2_02103	0.80	+1.9
2,254,432	+				-0.1
2,254,432	+				+0.5
2,254,433	-				-0.2
2,254,448	+				-1.2
2,254,448	+				-0.8
2,254,448	+				+0.8
2,254,448	+				+0.5
2,254,448	+				-0.2
2,254,448	+				-2.4
2,254,448	+				+0.4
2,254,448	+				-2.0
2,254,448	+				+1.5
2,254,448	+				+2.5
2,254,449	-				+1.5
2,254,449	-				-2.4
2,254,449	-				+0.4
2,254,449	-				+0.7
2,254,449	-				+0.4
2,254,449	-				-0.2
2,254,449	-				-0.5
2,254,449	-				-2.3
2,254,456	+				+0.8
2,254,456	+				-0.4
2,254,457	-				+2.0
2,254,457	-				+0.8
2,254,457	-				-2.1
2,254,457	-				-1.3
2,254,457	-				+0.9
2,254,466	+				+1.9
2,254,466	+				+1.6
2,254,467	-				+1.2
2,254,467	-				-1.5
2,254,547	+				+1.2
2,254,547	+				-1.5
2,254,547	+				-1.2
2,254,548	-				-2.3
2,254,548	-				-1.2
2,254,548	-				-1.3
2,254,548	-				+0.1
2,254,548	-				+0.8
2,254,608	+		EFB2_02104	0.16	+0.0
2,254,609	-		EFB2_02104	0.16	-1.3
2,254,609	-		EFB2_02104	0.16	-0.6
2,254,609	-		EFB2_02104	0.16	+0.4
2,254,609	-		EFB2_02104	0.16	+0.9
2,254,609	-		EFB2_02104	0.16	+3.7
2,254,698	+		EFB2_02104	0.26	+1.5
2,254,698	+		EFB2_02104	0.26	+0.6
2,254,698	+		EFB2_02104	0.26	-0.5
2,254,698	+		EFB2_02104	0.26	+0.6
2,254,698	+		EFB2_02104	0.26	+1.9
2,254,698	+		EFB2_02104	0.26	+0.8
2,254,698	+		EFB2_02104	0.26	+0.8
2,254,699	-		EFB2_02104	0.26	+2.2
2,254,699	-		EFB2_02104	0.26	-1.4
2,254,699	-		EFB2_02104	0.26	+0.7
2,254,779	+		EFB2_02104	0.35	-0.3
2,254,798	+		EFB2_02104	0.37	+0.8
2,254,799	-		EFB2_02104	0.37	-1.9
2,254,813	+		EFB2_02104	0.39	+0.4
2,254,813	+		EFB2_02104	0.39	-0.5
2,254,831	+		EFB2_02104	0.41	+0.5
2,254,831	+		EFB2_02104	0.41	+0.7
2,254,831	+		EFB2_02104	0.41	-0.3
2,254,831	+		EFB2_02104	0.41	-0.3
2,254,831	+		EFB2_02104	0.41	-1.8
2,254,831	+		EFB2_02104	0.41	-0.1
2,254,831	+		EFB2_02104	0.41	-1.1
2,254,832	-		EFB2_02104	0.41	+1.5
2,254,832	-		EFB2_02104	0.41	-0.9
2,254,832	-		EFB2_02104	0.41	+0.2
2,254,832	-		EFB2_02104	0.41	-0.0
2,254,840	+		EFB2_02104	0.42	+3.1
2,254,853	-		EFB2_02104	0.44	+0.1
2,254,853	-		EFB2_02104	0.44	+0.7
2,254,853	-		EFB2_02104	0.44	+0.2
2,254,918	+		EFB2_02104	0.51	+0.5
2,254,918	+		EFB2_02104	0.51	+1.2
2,254,919	-		EFB2_02104	0.51	+2.4
2,254,919	-		EFB2_02104	0.51	-1.6
2,254,919	-		EFB2_02104	0.51	-0.5