Strain Fitness in Escherichia fergusonii Becca around EFB2_02051

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,202,097	+		EFB2_02050	0.50	-1.8
2,202,097	+		EFB2_02050	0.50	-0.5
2,202,098	-		EFB2_02050	0.50	+0.4
2,202,098	-		EFB2_02050	0.50	+1.9
2,202,098	-		EFB2_02050	0.50	-2.2
2,202,098	-		EFB2_02050	0.50	+0.7
2,202,098	-		EFB2_02050	0.50	+0.2
2,202,102	+		EFB2_02050	0.51	-0.9
2,202,102	+		EFB2_02050	0.51	-0.5
2,202,102	+		EFB2_02050	0.51	-1.4
2,202,103	-		EFB2_02050	0.51	+3.3
2,202,103	-		EFB2_02050	0.51	-0.0
2,202,103	-		EFB2_02050	0.51	+0.6
2,202,103	-		EFB2_02050	0.51	+1.3
2,202,142	+		EFB2_02050	0.60	-1.9
2,202,142	+		EFB2_02050	0.60	+1.5
2,202,166	+		EFB2_02050	0.66	+0.8
2,202,166	+		EFB2_02050	0.66	-0.9
2,202,166	+		EFB2_02050	0.66	-0.5
2,202,167	-		EFB2_02050	0.66	+0.3
2,202,167	-		EFB2_02050	0.66	-2.1
2,202,167	-		EFB2_02050	0.66	-1.0
2,202,167	-		EFB2_02050	0.66	-0.9
2,202,167	-		EFB2_02050	0.66	-2.0
2,202,176	+		EFB2_02050	0.68	-1.5
2,202,176	+		EFB2_02050	0.68	+0.3
2,202,176	+		EFB2_02050	0.68	-2.4
2,202,176	+		EFB2_02050	0.68	-2.6
2,202,177	-		EFB2_02050	0.68	-1.4
2,202,201	+		EFB2_02050	0.74	-1.4
2,202,201	+		EFB2_02050	0.74	+1.3
2,202,201	+		EFB2_02050	0.74	-1.3
2,202,202	-		EFB2_02050	0.74	-0.5
2,202,205	+		EFB2_02050	0.75	+1.1
2,202,206	-		EFB2_02050	0.75	-1.3
2,202,206	-		EFB2_02050	0.75	-0.1
2,202,206	-		EFB2_02050	0.75	-3.4
2,202,224	-		EFB2_02050	0.79	-1.8
2,202,237	+		EFB2_02050	0.82	+0.0
2,202,237	+		EFB2_02050	0.82	+4.6
2,202,237	+		EFB2_02050	0.82	-1.7
2,202,238	-		EFB2_02050	0.83	+0.9
2,202,238	-		EFB2_02050	0.83	-2.1
2,202,238	-		EFB2_02050	0.83	+0.5
2,202,238	-		EFB2_02050	0.83	+1.5
2,202,238	-		EFB2_02050	0.83	-1.1
2,202,238	-		EFB2_02050	0.83	-0.0
2,202,238	-		EFB2_02050	0.83	+0.5
2,202,238	-		EFB2_02050	0.83	+5.5
2,202,242	-		EFB2_02050	0.83	-0.3
2,202,277	-				-1.0
2,202,297	+				-0.9
2,202,297	+				+1.3
2,202,297	+				-0.5
2,202,298	-				-0.0
2,202,303	+				-0.3
2,202,303	+				+1.4
2,202,303	+				-1.7
2,202,303	+				-0.5
2,202,304	-				-1.9
2,202,304	-				-0.1
2,202,304	-				+0.6
2,202,304	-				-1.4
2,202,304	-				-0.3
2,202,304	-				-2.0
2,202,304	-				-0.4
2,202,304	-				-2.1
2,202,305	+				-2.3
2,202,305	+				-2.1
2,202,305	+				-1.5
2,202,305	+				-1.0
2,202,305	+				-0.4
2,202,305	+				+0.7
2,202,305	+				-0.3
2,202,305	+				-1.3
2,202,305	+				-0.0
2,202,305	+				+0.7
2,202,305	+				+0.7
2,202,305	+				-0.8
2,202,305	+				-1.4
2,202,306	-				-1.0
2,202,306	-				+2.6
2,202,306	-				-1.4
2,202,306	-				+1.0
2,202,306	-				-0.3
2,202,306	-				-3.2
2,202,306	-				+1.3
2,202,306	-				+0.3
2,202,306	-				-2.1
2,202,306	-				-1.8
2,202,306	-				-0.0
2,202,306	-				+0.9
2,202,306	-				-0.3
2,202,306	-				+0.6
2,202,306	-				-0.3
2,202,306	-				-2.6
2,202,306	-				+0.7
2,202,306	-				+0.7
2,202,312	+				-0.7
2,202,325	-				+0.3
2,202,348	+				-0.7
2,202,349	-				+0.2
2,202,357	-				-1.3
2,202,363	-				+1.4
2,202,363	-				-0.8
2,202,470	+				-2.4
2,202,474	+				-2.2
2,202,485	-				+0.5
2,202,573	+				-0.7
2,202,573	+				+1.7
2,202,661	-				-1.6
2,202,670	+				-1.3
2,202,670	+				+0.7
2,202,760	-				+0.2
2,202,791	+				+2.7
2,202,791	+				+1.0
2,202,791	+				-2.5
2,202,791	+				-0.5
2,202,791	+				-1.0
2,202,792	-				+1.9
2,202,792	-				-1.7
2,202,800	+				-0.6
2,202,862	+				+1.2
2,202,862	+				-0.3
2,202,862	+				-1.9
2,202,862	+				+1.5
2,202,862	+				-3.0
2,202,862	+				+2.1
2,202,862	+				+0.3
2,202,862	+				-0.5
2,202,862	+				-1.4
2,202,862	+				+0.2
2,202,862	+				-0.2
2,202,862	+				-0.0
2,202,863	-				-1.2
2,202,863	-				-2.2
2,202,863	-				-0.1
2,202,863	-				+0.7
2,202,863	-				+1.1
2,202,863	-				+2.2
2,202,863	-				+0.5
2,202,863	-				+2.0
2,202,863	-				+1.5
2,202,872	+				+0.8
2,202,873	-				+0.7
2,202,882	+				+1.3
2,202,883	-				-0.9
2,202,883	-				-0.9
2,202,883	-				-1.2
2,202,914	+				+0.2
2,202,914	+				-0.0
2,202,914	+				-0.8
2,202,914	+				-1.0
2,202,914	+				-0.1
2,202,914	+				-0.8
2,202,914	+				+0.1
2,202,915	-				-1.3
2,202,915	-				+0.8
2,202,915	-				+0.9
2,202,915	-				+2.1
2,202,915	-				+0.1
2,202,915	-				-0.0
2,202,915	-				-0.3
2,202,915	-				+0.5
2,202,915	-				-0.1
2,202,915	-				+1.9
2,202,920	+				+0.0
2,202,920	+				+1.3
2,202,920	+				-1.0
2,202,920	+				+0.3
2,202,934	+				-1.9
2,202,934	+				+0.6
2,202,934	+				-0.4
2,202,935	-				-0.3
2,202,935	-				+0.1
2,202,935	-				+1.6
2,202,940	+				-1.1
2,202,940	+				+0.9
2,202,941	-				+0.4
2,202,948	+				+0.3
2,202,948	+				+0.9
2,202,948	+				-2.0
2,202,949	-				-1.3
2,202,949	-				+0.6
2,202,984	+				+1.3
2,202,993	+				-1.3
2,202,993	+				+0.1
2,202,994	-				+0.9
2,202,998	+				+1.6
2,202,999	-				+1.9
2,202,999	-				+0.7
2,203,004	+				-1.9
2,203,059	+				-0.2
2,203,059	+				-1.5
2,203,060	-				+1.5
2,203,066	-				+1.9
2,203,075	+				+0.3
2,203,090	+				-3.1
2,203,090	+				-0.8
2,203,091	-				-0.3
2,203,091	-				-0.3
2,203,097	+				+0.4
2,203,097	+				+3.7
2,203,098	-				-2.5
2,203,098	-				+1.0
2,203,098	-				+0.3
2,203,098	-				+1.4
2,203,122	+				+0.1
2,203,122	+				+0.4
2,203,122	+				-2.3
2,203,122	+				-1.4
2,203,122	+				-2.1
2,203,122	+				+1.4
2,203,122	+				+1.0
2,203,122	+				-0.5
2,203,122	+				-0.7
2,203,123	-				-0.5
2,203,123	-				-0.0
2,203,123	-				-1.9
2,203,140	+		EFB2_02051	0.14	-2.5
2,203,140	+		EFB2_02051	0.14	+1.2
2,203,140	+		EFB2_02051	0.14	-0.5
2,203,140	+		EFB2_02051	0.14	+1.2
2,203,141	-		EFB2_02051	0.14	+1.3
2,203,141	-		EFB2_02051	0.14	-0.0
2,203,141	-		EFB2_02051	0.14	-2.1
2,203,144	+		EFB2_02051	0.15	+0.0
2,203,144	+		EFB2_02051	0.15	-1.1
2,203,144	+		EFB2_02051	0.15	+0.7
2,203,144	+		EFB2_02051	0.15	+1.8
2,203,144	+		EFB2_02051	0.15	+0.1
2,203,144	+		EFB2_02051	0.15	-1.5
2,203,144	+		EFB2_02051	0.15	-1.2
2,203,144	+		EFB2_02051	0.15	+0.4
2,203,145	-		EFB2_02051	0.15	+2.0
2,203,145	-		EFB2_02051	0.15	+2.6
2,203,145	-		EFB2_02051	0.15	+0.3
2,203,145	-		EFB2_02051	0.15	+0.1
2,203,147	+		EFB2_02051	0.16	-2.2
2,203,147	+		EFB2_02051	0.16	+2.8
2,203,147	+		EFB2_02051	0.16	+0.3
2,203,148	-		EFB2_02051	0.16	-1.7
2,203,148	-		EFB2_02051	0.16	-0.3
2,203,187	+		EFB2_02051	0.27	+0.1
2,203,187	+		EFB2_02051	0.27	-1.2
2,203,188	-		EFB2_02051	0.27	-0.1
2,203,188	-		EFB2_02051	0.27	-0.7
2,203,204	+		EFB2_02051	0.32	-0.7
2,203,204	+		EFB2_02051	0.32	+0.1
2,203,204	+		EFB2_02051	0.32	+2.1
2,203,205	-		EFB2_02051	0.32	+0.9
2,203,205	-		EFB2_02051	0.32	-1.7
2,203,205	-		EFB2_02051	0.32	-1.9
2,203,205	-		EFB2_02051	0.32	-1.9
2,203,205	-		EFB2_02051	0.32	-1.1
2,203,316	+		EFB2_02051	0.64	-0.3
2,203,403	+		EFB2_02051	0.89	-1.0
2,203,403	+		EFB2_02051	0.89	+0.2
2,203,403	+		EFB2_02051	0.89	+0.5
2,203,404	-		EFB2_02051	0.89	+2.3
2,203,404	-		EFB2_02051	0.89	-0.9
2,203,548	+		EFB2_02052	0.18	+1.2
2,203,548	+		EFB2_02052	0.18	+2.3
2,203,548	+		EFB2_02052	0.18	+0.7
2,203,548	+		EFB2_02052	0.18	-1.4
2,203,548	+		EFB2_02052	0.18	+2.3
2,203,548	+		EFB2_02052	0.18	+0.8
2,203,549	-		EFB2_02052	0.18	-0.5
2,203,549	-		EFB2_02052	0.18	-0.9
2,203,574	+		EFB2_02052	0.22	-0.0
2,203,574	+		EFB2_02052	0.22	+0.0
2,203,575	-		EFB2_02052	0.22	-1.6
2,203,576	+		EFB2_02052	0.23	-1.3
2,203,636	+		EFB2_02052	0.33	-0.7
2,203,637	-		EFB2_02052	0.33	-3.1
2,203,675	+		EFB2_02052	0.40	+0.1
2,203,675	+		EFB2_02052	0.40	-1.7
2,203,675	+		EFB2_02052	0.40	+2.2
2,203,676	-		EFB2_02052	0.40	+2.5
2,203,676	-		EFB2_02052	0.40	-1.4
2,203,676	-		EFB2_02052	0.40	+0.5
2,203,676	-		EFB2_02052	0.40	+0.7
2,203,711	+		EFB2_02052	0.46	+1.5
2,203,711	+		EFB2_02052	0.46	-2.6
2,203,711	+		EFB2_02052	0.46	-0.7
2,203,711	+		EFB2_02052	0.46	+0.2
2,203,711	+		EFB2_02052	0.46	+0.1
2,203,712	-		EFB2_02052	0.46	-0.3
2,203,712	-		EFB2_02052	0.46	+0.7
2,203,712	-		EFB2_02052	0.46	+2.7
2,203,712	-		EFB2_02052	0.46	-1.6
2,203,712	-		EFB2_02052	0.46	+3.2
2,203,712	-		EFB2_02052	0.46	+1.6
2,203,740	-		EFB2_02052	0.51	-0.5
2,203,746	+		EFB2_02052	0.52	+0.7
2,203,747	-		EFB2_02052	0.52	-0.8
2,203,747	-		EFB2_02052	0.52	-1.5
2,203,749	-		EFB2_02052	0.53	+0.7
2,203,836	+		EFB2_02052	0.68	-0.7
2,203,876	+		EFB2_02052	0.74	+1.3
2,203,876	+		EFB2_02052	0.74	-2.0
2,203,876	+		EFB2_02052	0.74	-0.7
2,203,876	+		EFB2_02052	0.74	-2.0
2,203,876	+		EFB2_02052	0.74	+1.0
2,203,879	+		EFB2_02052	0.75	+1.2
2,203,880	-		EFB2_02052	0.75	-0.2
2,203,920	+		EFB2_02052	0.82	-1.7
2,203,920	+		EFB2_02052	0.82	+1.1
2,203,920	+		EFB2_02052	0.82	+1.1
2,203,920	+		EFB2_02052	0.82	+2.6
2,203,920	+		EFB2_02052	0.82	+1.2
2,203,920	+		EFB2_02052	0.82	-1.1
2,203,920	+		EFB2_02052	0.82	+1.4
2,203,920	+		EFB2_02052	0.82	+0.4
2,203,920	+		EFB2_02052	0.82	+0.7
2,203,920	+		EFB2_02052	0.82	+0.2
2,203,920	+		EFB2_02052	0.82	-0.2
2,203,921	-		EFB2_02052	0.82	-0.3
2,203,921	-		EFB2_02052	0.82	-2.0
2,203,921	-		EFB2_02052	0.82	-0.3
2,203,921	-		EFB2_02052	0.82	+0.4
2,203,921	-		EFB2_02052	0.82	+0.3
2,203,921	-		EFB2_02052	0.82	+0.5
2,203,921	-		EFB2_02052	0.82	-2.6
2,203,921	-		EFB2_02052	0.82	+2.9
2,203,921	-		EFB2_02052	0.82	+5.1
2,203,954	+		EFB2_02052	0.88	-0.9
2,203,954	+		EFB2_02052	0.88	-0.0
2,203,954	+		EFB2_02052	0.88	-1.1
2,203,955	-		EFB2_02052	0.88	+0.4
2,203,978	+				-0.7
2,203,979	-				-2.3
2,203,981	+				+0.5
2,203,981	+				-2.5
2,204,010	+				+0.3
2,204,010	+				-0.7
2,204,010	+				+0.2
2,204,010	+				+0.4
2,204,010	+				-0.4
2,204,010	+				+0.5
2,204,010	+				+1.7
2,204,010	+				+0.7
2,204,011	-				+0.0
2,204,011	-				+1.6
2,204,011	-				+0.3
2,204,011	-				-2.4
2,204,021	+				+0.4
2,204,021	+				-2.5
2,204,022	-				-1.6
2,204,022	-				-1.7
2,204,029	-				+0.4
2,204,065	+				-1.8
2,204,065	+				-0.6
2,204,065	+				+1.3
2,204,065	+				+0.0
2,204,097	+				+1.1
2,204,155	+				+1.1
2,204,155	+				-3.0
2,204,155	+				+0.0
2,204,156	-				+1.3
2,204,156	-				+0.1
2,204,160	+				+0.8
2,204,160	+				-1.8
2,204,160	+				+1.7
2,204,160	+				+2.0
2,204,160	+				-2.8
2,204,160	+				+0.9
2,204,160	+				+1.2
2,204,161	-				-3.1
2,204,161	-				+0.2
2,204,161	-				+2.3
2,204,161	-				-0.7
2,204,161	-				-0.1
2,204,161	-				-0.1
2,204,161	-				+2.7
2,204,161	-				+1.0
2,204,161	-				+0.6
2,204,161	-				-1.4
2,204,161	-				-1.1
2,204,161	-				+1.5
2,204,163	+				-0.7
2,204,163	+				-0.2
2,204,163	+				+2.5
2,204,163	+				-2.1
2,204,163	+				+0.7
2,204,163	+				+0.5
2,204,164	-				-0.0
2,204,164	-				+3.2
2,204,164	-				+1.5
2,204,164	-				+1.6
2,204,164	-				+0.2
2,204,164	-				+0.8
2,204,168	+				+2.1
2,204,201	+				-0.5
2,204,202	-				+0.7
2,204,202	-				-0.2
2,204,234	+				+1.6
2,204,234	+				-2.3
2,204,234	+				-0.3
2,204,234	+				+4.1
2,204,234	+				+0.2
2,204,234	+				+0.4
2,204,234	+				-0.5
2,204,234	+				+1.8
2,204,234	+				+0.1
2,204,234	+				+1.8
2,204,234	+				+0.5
2,204,235	-				+0.2
2,204,235	-				-2.2
2,204,235	-				+0.2
2,204,235	-				+4.5
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