Strain Fitness in Escherichia fergusonii Becca around EFB2_02039

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,190,264	+				+2.0
2,190,278	+				-0.0
2,190,334	+				-2.0
2,190,334	+				-0.7
2,190,334	+				+2.8
2,190,346	-				-0.4
2,190,379	+				-1.4
2,190,402	+				-2.2
2,190,402	+				-0.5
2,190,402	+				-0.5
2,190,402	+				-1.0
2,190,402	+				+1.1
2,190,402	+				+1.0
2,190,402	+				+3.9
2,190,402	+				+1.9
2,190,402	+				+0.3
2,190,402	+				+0.2
2,190,402	+				-2.2
2,190,402	+				+0.3
2,190,402	+				-0.5
2,190,402	+				+0.5
2,190,402	+				-1.6
2,190,402	+				+1.4
2,190,402	+				+1.5
2,190,402	+				+0.7
2,190,402	+				+1.1
2,190,402	+				+0.3
2,190,402	+				+0.7
2,190,402	+				-2.6
2,190,403	-				-0.9
2,190,403	-				-0.5
2,190,403	-				+0.1
2,190,403	-				-0.0
2,190,403	-				+1.0
2,190,403	-				+0.0
2,190,403	-				+1.1
2,190,403	-				-0.9
2,190,403	-				+1.5
2,190,403	-				+0.2
2,190,403	-				+1.1
2,190,403	-				+1.3
2,190,403	-				-1.0
2,190,403	-				-0.0
2,190,403	-				+0.0
2,190,403	-				-0.7
2,190,403	-				-2.3
2,190,403	-				-1.3
2,190,403	-				+0.6
2,190,403	-				-2.3
2,190,403	-				-0.1
2,190,407	+				+0.4
2,190,407	+				+1.4
2,190,407	+				-2.6
2,190,407	+				-1.6
2,190,407	+				-0.8
2,190,407	+				+0.3
2,190,407	+				-0.0
2,190,407	+				-1.6
2,190,407	+				+1.1
2,190,408	-				-1.4
2,190,408	-				+0.6
2,190,408	-				+2.0
2,190,408	-				+0.2
2,190,408	-				-1.2
2,190,408	-				+0.4
2,190,408	-				+0.5
2,190,408	-				-0.1
2,190,408	-				-0.6
2,190,408	-				-1.5
2,190,408	-				-0.4
2,190,408	-				-2.5
2,190,444	-				-0.9
2,190,444	-				+1.5
2,190,491	+				+0.8
2,190,504	+				+0.6
2,190,504	+				+1.0
2,190,504	+				-0.4
2,190,504	+				-0.5
2,190,504	+				-0.2
2,190,504	+				-1.3
2,190,504	+				-0.5
2,190,504	+				-0.4
2,190,504	+				+2.1
2,190,505	-				-2.0
2,190,505	-				-2.2
2,190,505	-				+2.7
2,190,627	+		EFB2_02038	0.27	+0.4
2,190,627	+		EFB2_02038	0.27	-0.3
2,190,627	+		EFB2_02038	0.27	-0.5
2,190,627	+		EFB2_02038	0.27	+1.8
2,190,627	+		EFB2_02038	0.27	+1.2
2,190,627	+		EFB2_02038	0.27	-2.0
2,190,627	+		EFB2_02038	0.27	-1.0
2,190,627	+		EFB2_02038	0.27	+0.3
2,190,627	+		EFB2_02038	0.27	+0.2
2,190,627	+		EFB2_02038	0.27	+0.8
2,190,627	+		EFB2_02038	0.27	+1.8
2,190,627	+		EFB2_02038	0.27	-0.7
2,190,628	-		EFB2_02038	0.28	+0.7
2,190,628	-		EFB2_02038	0.28	-1.2
2,190,628	-		EFB2_02038	0.28	+2.0
2,190,668	+		EFB2_02038	0.34	+2.4
2,190,668	+		EFB2_02038	0.34	-2.0
2,190,669	-		EFB2_02038	0.34	+1.2
2,190,689	+		EFB2_02038	0.37	-0.1
2,190,689	+		EFB2_02038	0.37	+1.6
2,190,689	+		EFB2_02038	0.37	-1.3
2,190,689	+		EFB2_02038	0.37	+1.0
2,190,689	+		EFB2_02038	0.37	-0.1
2,190,689	+		EFB2_02038	0.37	+0.2
2,190,689	+		EFB2_02038	0.37	+0.8
2,190,689	+		EFB2_02038	0.37	+1.3
2,190,690	-		EFB2_02038	0.37	-0.1
2,190,690	-		EFB2_02038	0.37	-0.7
2,190,690	-		EFB2_02038	0.37	-0.5
2,190,690	-		EFB2_02038	0.37	-1.5
2,190,690	-		EFB2_02038	0.37	-2.8
2,190,804	+		EFB2_02038	0.54	+0.1
2,190,804	+		EFB2_02038	0.54	+1.0
2,190,804	+		EFB2_02038	0.54	-0.3
2,190,804	+		EFB2_02038	0.54	+0.3
2,190,804	+		EFB2_02038	0.54	-0.6
2,190,804	+		EFB2_02038	0.54	+1.1
2,190,804	+		EFB2_02038	0.54	+0.4
2,190,805	-		EFB2_02038	0.54	-2.1
2,190,805	-		EFB2_02038	0.54	+1.0
2,190,805	-		EFB2_02038	0.54	-0.0
2,190,806	+		EFB2_02038	0.54	-0.5
2,190,807	-		EFB2_02038	0.55	-1.7
2,190,946	+		EFB2_02038	0.75	+1.3
2,190,946	+		EFB2_02038	0.75	+0.2
2,190,946	+		EFB2_02038	0.75	-0.6
2,190,946	+		EFB2_02038	0.75	-0.5
2,190,946	+		EFB2_02038	0.75	-1.4
2,190,946	+		EFB2_02038	0.75	+0.3
2,190,946	+		EFB2_02038	0.75	+0.8
2,190,946	+		EFB2_02038	0.75	-0.2
2,190,946	+		EFB2_02038	0.75	+0.7
2,190,946	+		EFB2_02038	0.75	+2.7
2,190,946	+		EFB2_02038	0.75	-0.9
2,190,946	+		EFB2_02038	0.75	+0.7
2,190,946	+		EFB2_02038	0.75	-1.8
2,190,946	+		EFB2_02038	0.75	-0.3
2,190,946	+		EFB2_02038	0.75	+0.3
2,190,946	+		EFB2_02038	0.75	+0.3
2,190,946	+		EFB2_02038	0.75	-1.6
2,190,946	+		EFB2_02038	0.75	+0.5
2,190,947	-		EFB2_02038	0.76	-0.0
2,190,976	+		EFB2_02038	0.80	+0.0
2,190,976	+		EFB2_02038	0.80	-2.0
2,190,976	+		EFB2_02038	0.80	-2.0
2,190,976	+		EFB2_02038	0.80	-0.5
2,190,976	+		EFB2_02038	0.80	+0.2
2,190,976	+		EFB2_02038	0.80	+1.5
2,190,976	+		EFB2_02038	0.80	+0.3
2,190,976	+		EFB2_02038	0.80	-1.3
2,190,977	-		EFB2_02038	0.80	+1.1
2,190,977	-		EFB2_02038	0.80	-0.7
2,190,984	+		EFB2_02038	0.81	-2.2
2,190,984	+		EFB2_02038	0.81	-0.0
2,190,984	+		EFB2_02038	0.81	+1.2
2,190,984	+		EFB2_02038	0.81	+0.6
2,191,059	-				+1.5
2,191,073	+				+0.9
2,191,079	+				-2.5
2,191,088	+				-0.3
2,191,089	-				+1.1
2,191,089	-				-0.2
2,191,107	+				-2.0
2,191,107	+				-0.3
2,191,107	+				-2.8
2,191,107	+				-1.2
2,191,107	+				+1.1
2,191,107	+				-0.6
2,191,107	+				-1.7
2,191,107	+				-2.2
2,191,108	-				-1.8
2,191,108	-				-1.7
2,191,108	-				+1.5
2,191,108	-				+1.6
2,191,108	-				-2.1
2,191,164	+				-1.6
2,191,164	+				+2.3
2,191,164	+				+1.7
2,191,165	-				+0.6
2,191,165	-				-1.3
2,191,165	-				+0.7
2,191,168	+				+1.1
2,191,168	+				+0.1
2,191,168	+				-0.3
2,191,168	+				+1.6
2,191,168	+				-0.5
2,191,168	+				+2.3
2,191,168	+				-0.6
2,191,168	+				-0.9
2,191,168	+				-0.3
2,191,168	+				-0.1
2,191,168	+				-0.5
2,191,169	-				-0.4
2,191,169	-				-2.8
2,191,169	-				-1.3
2,191,169	-				-0.2
2,191,169	-				-2.8
2,191,169	-				-1.8
2,191,169	-				-0.2
2,191,169	-				-0.4
2,191,169	-				-0.3
2,191,169	-				+0.6
2,191,169	-				+0.7
2,191,169	-				-0.1
2,191,169	-				+0.3
2,191,169	-				+1.0
2,191,171	-				-1.2
2,191,187	-				-2.1
2,191,231	-				-0.3
2,191,231	-				+0.1
2,191,231	-				-1.3
2,191,231	-				+2.0
2,191,333	-		EFB2_02039	0.13	-3.0
2,191,333	-		EFB2_02039	0.13	-0.8
2,191,398	-		EFB2_02039	0.19	+1.3
2,191,398	-		EFB2_02039	0.19	-0.2
2,191,432	-		EFB2_02039	0.22	-1.3
2,191,432	-		EFB2_02039	0.22	+0.9
2,191,432	-		EFB2_02039	0.22	+0.5
2,191,432	-		EFB2_02039	0.22	+1.3
2,191,432	-		EFB2_02039	0.22	-1.5
2,191,432	-		EFB2_02039	0.22	-0.4
2,191,465	-		EFB2_02039	0.24	-2.4
2,191,502	-		EFB2_02039	0.27	+0.2
2,191,502	-		EFB2_02039	0.27	+1.7
2,191,502	-		EFB2_02039	0.27	-1.0
2,191,502	-		EFB2_02039	0.27	-1.9
2,191,541	-		EFB2_02039	0.31	+0.7
2,191,541	-		EFB2_02039	0.31	+0.8
2,191,553	-		EFB2_02039	0.32	-2.0
2,191,553	-		EFB2_02039	0.32	+0.2
2,191,553	-		EFB2_02039	0.32	+1.0
2,191,553	-		EFB2_02039	0.32	-0.3
2,191,553	-		EFB2_02039	0.32	-1.2
2,191,619	-		EFB2_02039	0.37	-1.5
2,191,619	-		EFB2_02039	0.37	+2.3
2,191,619	-		EFB2_02039	0.37	-0.1
2,191,619	-		EFB2_02039	0.37	-2.3
2,191,669	-		EFB2_02039	0.41	+0.4
2,191,696	-		EFB2_02039	0.43	+1.5
2,191,696	-		EFB2_02039	0.43	+0.3
2,191,696	-		EFB2_02039	0.43	-0.2
2,191,696	-		EFB2_02039	0.43	+1.3
2,191,696	-		EFB2_02039	0.43	+0.4
2,191,696	-		EFB2_02039	0.43	+1.6
2,191,696	-		EFB2_02039	0.43	+0.7
2,191,698	-		EFB2_02039	0.43	+1.0
2,191,698	-		EFB2_02039	0.43	+1.7
2,191,698	-		EFB2_02039	0.43	-0.7
2,191,698	-		EFB2_02039	0.43	+0.1
2,191,698	-		EFB2_02039	0.43	-0.7
2,191,727	-		EFB2_02039	0.46	-0.4
2,191,727	-		EFB2_02039	0.46	+0.2
2,191,728	+		EFB2_02039	0.46	-0.5
2,191,729	-		EFB2_02039	0.46	+0.9
2,191,729	-		EFB2_02039	0.46	-3.5
2,191,729	-		EFB2_02039	0.46	-0.5
2,191,742	-		EFB2_02039	0.47	-0.7
2,191,742	-		EFB2_02039	0.47	+0.7
2,191,747	-		EFB2_02039	0.48	-0.8
2,191,747	-		EFB2_02039	0.48	-2.4
2,191,747	-		EFB2_02039	0.48	+0.5
2,191,765	-		EFB2_02039	0.49	+0.4
2,191,765	-		EFB2_02039	0.49	-1.1
2,191,765	-		EFB2_02039	0.49	-2.5
2,191,765	-		EFB2_02039	0.49	+0.9
2,191,765	-		EFB2_02039	0.49	+2.3
2,191,765	-		EFB2_02039	0.49	+3.0
2,191,766	+		EFB2_02039	0.49	-0.3
2,191,766	+		EFB2_02039	0.49	-0.7
2,191,767	-		EFB2_02039	0.49	-0.0
2,191,767	-		EFB2_02039	0.49	+0.4
2,191,767	-		EFB2_02039	0.49	+0.3
2,191,767	-		EFB2_02039	0.49	-2.3
2,191,767	-		EFB2_02039	0.49	-2.6
2,191,767	-		EFB2_02039	0.49	+0.0
2,191,767	-		EFB2_02039	0.49	-0.8
2,191,767	-		EFB2_02039	0.49	-0.6
2,191,767	-		EFB2_02039	0.49	-2.8
2,191,767	-		EFB2_02039	0.49	-0.5
2,191,767	-		EFB2_02039	0.49	+2.9
2,191,767	-		EFB2_02039	0.49	-1.5
2,191,767	-		EFB2_02039	0.49	-0.0
2,191,767	-		EFB2_02039	0.49	+1.6
2,191,767	-		EFB2_02039	0.49	+1.8
2,191,767	-		EFB2_02039	0.49	+1.0
2,191,767	-		EFB2_02039	0.49	-0.7
2,191,777	-		EFB2_02039	0.50	-0.0
2,191,882	-		EFB2_02039	0.59	-1.3
2,191,898	-		EFB2_02039	0.60	-1.7
2,191,898	-		EFB2_02039	0.60	+0.9
2,191,952	-		EFB2_02039	0.64	+1.5
2,191,952	-		EFB2_02039	0.64	-1.4
2,192,037	+		EFB2_02039	0.71	+0.5
2,192,038	-		EFB2_02039	0.72	-1.4
2,192,038	-		EFB2_02039	0.72	+0.3
2,192,038	-		EFB2_02039	0.72	-2.5
2,192,038	-		EFB2_02039	0.72	-1.2
2,192,038	-		EFB2_02039	0.72	+1.6
2,192,038	-		EFB2_02039	0.72	-1.2
2,192,038	-		EFB2_02039	0.72	-2.4
2,192,038	-		EFB2_02039	0.72	-1.8
2,192,038	-		EFB2_02039	0.72	+0.9
2,192,038	-		EFB2_02039	0.72	+1.1
2,192,038	-		EFB2_02039	0.72	-3.0
2,192,090	+		EFB2_02039	0.76	-0.0
2,192,090	+		EFB2_02039	0.76	+1.3
2,192,091	-		EFB2_02039	0.76	+1.3
2,192,091	-		EFB2_02039	0.76	-1.4
2,192,091	-		EFB2_02039	0.76	-0.0
2,192,091	-		EFB2_02039	0.76	+0.3
2,192,091	-		EFB2_02039	0.76	+0.9
2,192,091	-		EFB2_02039	0.76	-0.6
2,192,091	-		EFB2_02039	0.76	-0.4
2,192,091	-		EFB2_02039	0.76	+0.7
2,192,091	-		EFB2_02039	0.76	+0.2
2,192,091	-		EFB2_02039	0.76	+0.3
2,192,091	-		EFB2_02039	0.76	-2.0
2,192,091	-		EFB2_02039	0.76	-2.6
2,192,091	-		EFB2_02039	0.76	+0.7
2,192,091	-		EFB2_02039	0.76	+0.2
2,192,091	-		EFB2_02039	0.76	+0.0
2,192,091	-		EFB2_02039	0.76	+0.2
2,192,091	-		EFB2_02039	0.76	-0.5
2,192,091	-		EFB2_02039	0.76	-3.4
2,192,091	-		EFB2_02039	0.76	+0.7
2,192,091	-		EFB2_02039	0.76	+2.2
2,192,091	-		EFB2_02039	0.76	+0.4
2,192,108	+		EFB2_02039	0.77	+0.6
2,192,109	-		EFB2_02039	0.77	+1.2
2,192,109	-		EFB2_02039	0.77	+1.8
2,192,109	-		EFB2_02039	0.77	+0.8
2,192,109	-		EFB2_02039	0.77	-2.5
2,192,109	-		EFB2_02039	0.77	+1.7
2,192,109	-		EFB2_02039	0.77	+0.9
2,192,109	-		EFB2_02039	0.77	+0.8
2,192,109	-		EFB2_02039	0.77	-0.1
2,192,109	-		EFB2_02039	0.77	+0.6
2,192,109	-		EFB2_02039	0.77	+1.0
2,192,109	-		EFB2_02039	0.77	+0.0
2,192,109	-		EFB2_02039	0.77	+1.0
2,192,109	-		EFB2_02039	0.77	-2.5
2,192,114	-		EFB2_02039	0.78	+0.8
2,192,124	+		EFB2_02039	0.79	-2.1
2,192,125	-		EFB2_02039	0.79	-0.7
2,192,125	-		EFB2_02039	0.79	-0.0
2,192,125	-		EFB2_02039	0.79	-0.2
2,192,125	-		EFB2_02039	0.79	-0.4
2,192,125	-		EFB2_02039	0.79	+0.7
2,192,125	-		EFB2_02039	0.79	-1.2
2,192,125	-		EFB2_02039	0.79	+0.5
2,192,125	-		EFB2_02039	0.79	+1.5
2,192,125	-		EFB2_02039	0.79	+0.1
2,192,125	-		EFB2_02039	0.79	+0.3
2,192,163	-		EFB2_02039	0.82	+0.4
2,192,210	+		EFB2_02039	0.86	+0.3
2,192,211	-		EFB2_02039	0.86	+0.6
2,192,225	-		EFB2_02039	0.87	-2.2
2,192,225	-		EFB2_02039	0.87	-1.0
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