Strain Fitness in Escherichia fergusonii Becca around EFB2_01878

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
1,991,435	+				-0.7
1,991,435	+				-0.7
1,991,435	+				-0.1
1,991,435	+				+0.3
1,991,435	+				-1.6
1,991,435	+				+0.9
1,991,435	+				+1.8
1,991,435	+				-0.4
1,991,435	+				-0.0
1,991,436	-				+0.4
1,991,436	-				+0.2
1,991,436	-				+1.5
1,991,436	-				+1.8
1,991,436	-				+0.5
1,991,436	-				-1.1
1,991,436	-				+1.7
1,991,436	-				-0.9
1,991,436	-				-1.3
1,991,436	-				-0.6
1,991,436	-				-2.0
1,991,436	-				+0.6
1,991,436	-				+0.7
1,991,436	-				+0.3
1,991,436	-				+1.2
1,991,436	-				-0.4
1,991,437	+				-1.5
1,991,437	+				-1.3
1,991,437	+				-2.4
1,991,437	+				-0.7
1,991,437	+				+1.9
1,991,438	-				-0.1
1,991,438	-				+0.6
1,991,438	-				+1.1
1,991,438	-				-0.1
1,991,438	-				-1.1
1,991,438	-				+0.9
1,991,444	+				-2.9
1,991,445	-				+1.0
1,991,450	+				-2.4
1,991,450	+				-0.9
1,991,451	-				-1.6
1,991,455	+				-1.6
1,991,455	+				-2.4
1,991,455	+				+0.6
1,991,456	-				+0.2
1,991,507	-				-2.5
1,991,507	-				-1.7
1,991,507	-				-3.1
1,991,507	-				-1.9
1,991,507	-				-0.3
1,991,546	-				+0.6
1,991,546	-				+1.7
1,991,573	+				+0.1
1,991,573	+				-1.9
1,991,574	-				-0.8
1,991,574	-				-1.7
1,991,574	-				-1.9
1,991,574	-				-1.8
1,991,612	+				+3.1
1,991,613	-				+1.3
1,991,613	-				+0.2
1,991,626	+				-1.7
1,991,626	+				-2.0
1,991,626	+				-0.3
1,991,644	-				+0.5
1,991,646	+				-0.2
1,991,647	-				-1.5
1,991,648	+				-2.8
1,991,648	+				+1.9
1,991,648	+				-2.4
1,991,648	+				-0.8
1,991,648	+				-1.6
1,991,648	+				-1.0
1,991,648	+				+1.2
1,991,648	+				+0.6
1,991,648	+				-0.7
1,991,649	-				-1.7
1,991,649	-				-1.8
1,991,649	-				-0.6
1,991,649	-				+1.1
1,991,649	-				+0.4
1,991,649	-				+0.2
1,991,649	-				-0.4
1,991,649	-				+1.4
1,991,649	-				+0.9
1,991,649	-				-0.4
1,991,649	-				-1.4
1,991,649	-				-0.4
1,991,652	+				+1.9
1,991,652	+				+0.7
1,991,652	+				-1.1
1,991,653	-				-0.8
1,991,653	-				-0.0
1,991,653	-				-0.2
1,991,653	-				-1.6
1,991,653	-				-2.3
1,991,653	-				-0.1
1,991,654	+				+2.9
1,991,654	+				+0.9
1,991,654	+				+1.7
1,991,654	+				-0.7
1,991,654	+				+1.0
1,991,654	+				+0.3
1,991,654	+				-1.6
1,991,654	+				+1.2
1,991,654	+				-0.4
1,991,654	+				-1.0
1,991,655	-				+0.1
1,991,655	-				+0.5
1,991,655	-				-1.6
1,991,655	-				+0.2
1,991,655	-				-0.6
1,991,672	+				-0.6
1,991,677	+				-1.1
1,991,677	+				+0.4
1,991,677	+				+1.0
1,991,677	+				+1.0
1,991,677	+				+0.5
1,991,678	-				+0.1
1,991,678	-				-2.6
1,991,678	-				-1.3
1,991,678	-				-0.1
1,991,694	+				-0.0
1,991,694	+				+1.2
1,991,694	+				-1.7
1,991,699	+				+1.5
1,991,699	+				+0.4
1,991,699	+				-0.2
1,991,699	+				+0.1
1,991,699	+				-0.1
1,991,699	+				+0.4
1,991,699	+				+0.2
1,991,699	+				+3.3
1,991,699	+				+1.2
1,991,699	+				-1.6
1,991,699	+				-0.6
1,991,699	+				+1.7
1,991,699	+				-0.1
1,991,699	+				+1.9
1,991,699	+				+0.3
1,991,699	+				-1.9
1,991,699	+				+0.2
1,991,699	+				+2.1
1,991,699	+				+2.4
1,991,699	+				+1.2
1,991,700	-				-0.4
1,991,700	-				+2.4
1,991,700	-				+1.1
1,991,700	-				+2.0
1,991,700	-				+0.2
1,991,700	-				-0.1
1,991,700	-				-1.5
1,991,700	-				+0.1
1,991,700	-				+0.6
1,991,700	-				+0.7
1,991,700	-				-0.4
1,991,707	+				-2.1
1,991,707	+				-0.5
1,991,707	+				+2.9
1,991,720	+				+1.2
1,991,759	+				-2.4
1,991,759	+				-2.1
1,991,759	+				+1.3
1,991,759	+				+2.2
1,991,759	+				-3.8
1,991,759	+				+0.5
1,991,759	+				-1.6
1,991,759	+				-0.4
1,991,759	+				-1.1
1,991,760	-				-1.8
1,991,760	-				-0.5
1,991,760	-				+0.7
1,991,760	-				+0.2
1,991,760	-				-1.5
1,991,760	-				-0.4
1,991,808	-				-1.5
1,991,821	+				+2.5
1,991,821	+				+0.3
1,991,821	+				+0.8
1,991,821	+				+1.4
1,991,821	+				-0.4
1,991,822	-				+0.7
1,991,822	-				-1.7
1,991,822	-				+0.2
1,991,822	-				-0.6
1,991,822	-				-2.0
1,991,822	-				+0.2
1,991,822	-				-0.4
1,991,822	-				+2.4
1,991,822	-				-0.9
1,991,822	-				-0.4
1,991,822	-				+0.2
1,991,822	-				-1.8
1,991,822	-				+2.9
1,991,823	+				-0.3
1,991,823	+				-0.6
1,991,823	+				-1.7
1,991,823	+				-2.1
1,991,823	+				-1.9
1,991,824	-				-1.1
1,991,824	-				-2.0
1,991,824	-				-0.3
1,991,824	-				+2.9
1,991,824	-				+0.8
1,991,824	-				-0.8
1,991,841	+				+0.2
1,991,841	+				-2.9
1,991,841	+				-2.0
1,991,842	-				+1.0
1,991,842	-				-1.0
1,991,842	-				+0.2
1,991,844	+				+3.4
1,991,844	+				-1.4
1,991,844	+				-0.5
1,991,844	+				-1.9
1,991,845	-				+0.3
1,991,845	-				-1.3
1,991,845	-				-1.7
1,991,845	-				-1.7
1,991,845	-				-1.7
1,991,845	-				-0.4
1,991,845	-				+0.3
1,991,845	-				+1.6
1,991,845	-				-0.3
1,991,845	-				+0.4
1,991,909	+				+0.4
1,991,909	+				+0.4
1,991,919	+				-0.6
1,991,919	+				-0.1
1,991,919	+				+0.0
1,991,919	+				+2.0
1,991,919	+				-0.3
1,991,919	+				+2.2
1,991,919	+				-0.1
1,991,919	+				+0.2
1,991,920	-				-2.3
1,991,920	-				-1.0
1,991,920	-				-0.4
1,991,920	-				+0.3
1,991,967	+				-1.1
1,991,967	+				-1.3
1,991,967	+				+1.1
1,991,967	+				+3.4
1,991,967	+				-0.6
1,991,968	-				-0.3
1,991,968	-				+0.1
1,991,968	-				+2.2
1,991,968	-				+0.9
1,991,968	-				+0.7
1,991,968	-				+2.2
1,991,968	-				-0.3
1,991,968	-				+0.7
1,991,968	-				+0.6
1,991,968	-				-0.5
1,991,968	-				+0.8
1,991,968	-				-2.0
1,991,975	+				-3.3
1,991,975	+				-1.3
1,991,975	+				-1.4
1,991,976	-				-2.2
1,991,976	-				+1.9
1,991,992	+				+0.8
1,991,992	+				+2.0
1,991,992	+				-0.5
1,991,992	+				+0.8
1,991,992	+				+1.5
1,991,992	+				+0.2
1,991,992	+				-1.0
1,991,993	-				+0.1
1,991,993	-				-1.4
1,992,009	+				-1.4
1,992,009	+				+0.6
1,992,009	+				+1.1
1,992,009	+				-2.4
1,992,009	+				-0.1
1,992,009	+				-2.5
1,992,009	+				+2.8
1,992,010	-				-2.3
1,992,010	-				-2.0
1,992,010	-				-1.8
1,992,010	-				+0.7
1,992,010	-				-0.4
1,992,010	-				-0.7
1,992,010	-				-1.5
1,992,010	-				+0.4
1,992,010	-				+1.0
1,992,010	-				-0.5
1,992,051	+				+0.5
1,992,051	+				+1.3
1,992,052	-				+0.9
1,992,057	+				+2.0
1,992,057	+				-1.1
1,992,081	+				+1.2
1,992,081	+				+1.2
1,992,190	+				+0.4
1,992,191	-				+1.0
1,992,191	-				+1.6
1,992,191	-				-0.8
1,992,191	-				+0.4
1,992,191	-				+1.3
1,992,191	-				+0.3
1,992,206	+				+3.3
1,992,207	-				-2.7
1,992,217	+				+0.1
1,992,233	+				+1.1
1,992,257	+				+0.2
1,992,258	-				+0.9
1,992,258	-				-0.5
1,992,288	+				-0.4
1,992,300	+				-0.1
1,992,300	+				-0.5
1,992,300	+				+1.3
1,992,300	+				+0.8
1,992,300	+				-0.6
1,992,301	-				-1.2
1,992,301	-				-0.6
1,992,314	+				-0.6
1,992,314	+				+1.0
1,992,314	+				-3.0
1,992,314	+				+0.8
1,992,315	-				-1.3
1,992,331	+				-2.6
1,992,331	+				-0.0
1,992,331	+				+0.9
1,992,331	+				+0.6
1,992,332	-				+2.2
1,992,332	-				+1.2
1,992,332	-				+1.1
1,992,332	-				-0.7
1,992,332	-				-0.0
1,992,336	+				-0.8
1,992,336	+				+0.8
1,992,336	+				-0.6
1,992,337	-				-0.5
1,992,337	-				+0.6
1,992,337	-				-0.4
1,992,337	-				-0.1
1,992,337	-				-1.1
1,992,337	-				-3.7
1,992,337	-				+0.2
1,992,337	-				+2.0
1,992,363	+				-0.4
1,992,363	+				+0.2
1,992,363	+				+0.3
1,992,363	+				+1.0
1,992,364	-				-1.0
1,992,364	-				+0.3
1,992,364	-				+0.4
1,992,364	-				+2.4
1,992,366	+				-3.0
1,992,366	+				-1.0
1,992,366	+				+1.3
1,992,366	+				+0.6
1,992,366	+				-0.1
1,992,366	+				-3.9
1,992,366	+				-0.6
1,992,366	+				+3.3
1,992,366	+				-1.8
1,992,366	+				+1.8
1,992,366	+				-1.7
1,992,366	+				+0.9
1,992,366	+				-3.2
1,992,367	-				+0.5
1,992,367	-				-1.5
1,992,367	-				-1.8
1,992,367	-				+1.5
1,992,367	-				-0.9
1,992,367	-				+0.2
1,992,367	-				-1.0
1,992,367	-				-0.6
1,992,367	-				-0.1
1,992,367	-				-0.4
1,992,367	-				-1.3
1,992,367	-				-0.4
1,992,367	-				-0.3
1,992,367	-				+0.6
1,992,367	-				-0.2
1,992,368	+				+0.1
1,992,369	-				+0.1
1,992,369	-				+0.7
1,992,369	-				-2.8
1,992,376	-				+0.5
1,992,395	+				+0.4
1,992,395	+				+1.1
1,992,395	+				-0.6
1,992,395	+				-0.3
1,992,396	-				-0.0
1,992,396	-				+2.2
1,992,396	-				+0.0
1,992,396	-				-0.6
1,992,396	-				-0.3
1,992,408	-				+0.0
1,992,419	+				+3.2
1,992,419	+				-1.0
1,992,420	-				+0.4
1,992,420	-				+0.9
1,992,420	-				+0.3
1,992,420	-				-1.5
1,992,420	-				+0.1
1,992,420	-				-0.5
1,992,426	+				-2.1
1,992,426	+				+1.5
1,992,426	+				-3.0
1,992,426	+				-1.2
1,992,426	+				+0.6
1,992,426	+				+0.9
1,992,426	+				-3.2
1,992,426	+				+1.2
1,992,426	+				-0.4
1,992,426	+				+1.1
1,992,426	+				+0.8
1,992,426	+				-0.6
1,992,426	+				-2.2
1,992,426	+				-0.1
1,992,426	+				+1.2
1,992,426	+				-0.6
1,992,426	+				-0.9
1,992,426	+				+1.2
1,992,426	+				+1.6
1,992,426	+				-0.6
1,992,426	+				+0.5
1,992,426	+				+0.1
1,992,426	+				+1.7
1,992,427	-				+1.7
1,992,427	-				-0.4
1,992,427	-				+0.4
1,992,427	-				+1.0
1,992,427	-				-2.3
1,992,427	-				-1.5
1,992,427	-				+1.3
1,992,427	-				-1.4
1,992,427	-				+0.5
1,992,427	-				+0.2
1,992,427	-				+1.4
1,992,427	-				+1.5
1,992,427	-				+3.8
1,992,427	-				+2.9
1,992,427	-				-3.6
1,992,427	-				+2.3
1,992,427	-				-1.4
1,992,427	-				-0.4
1,992,427	-				-1.5
1,992,427	-				+0.1
1,992,427	-				-0.4
1,992,427	-				+2.7
1,992,427	-				-1.6
1,992,427	-				+1.5
1,992,427	-				+0.4
1,992,427	-				+0.4
1,992,427	-				+0.5
1,992,427	-				-1.4
1,992,427	-				-2.0
1,992,427	-				+2.0
1,992,428	+				-0.1
1,992,428	+				-0.4
1,992,428	+				+1.8
1,992,428	+				+1.0
1,992,428	+				-0.4
1,992,428	+				-2.0
1,992,428	+				-2.9
1,992,428	+				-1.5
1,992,428	+				+0.9
1,992,428	+				+2.2
1,992,428	+				-0.8
1,992,428	+				-0.9
1,992,428	+				-0.4
1,992,428	+				-0.8
1,992,428	+				-0.6
1,992,428	+				-0.4
1,992,428	+				+0.8
1,992,428	+				+0.6
1,992,428	+				-3.9
1,992,428	+				+1.1
1,992,428	+				-0.4
1,992,428	+				+2.7
1,992,428	+				-2.3
1,992,428	+				+2.3
1,992,428	+				+2.3
1,992,429	-				+1.2
1,992,429	-				-1.6
1,992,429	-				-1.6
1,992,429	-				+2.4
1,992,429	-				-0.4
1,992,429	-				-1.3
1,992,429	-				-2.3
1,992,429	-				-0.2
1,992,429	-				-0.1
1,992,429	-				-3.0
1,992,429	-				+0.2
1,992,429	-				+0.1
1,992,429	-				-1.4
1,992,429	-				-2.8
1,992,429	-				+0.7
1,992,429	-				+1.0
1,992,429	-				-2.1
1,992,430	+				-1.7
1,992,430	+				+0.2
1,992,430	+				-3.0
1,992,430	+				+0.2
1,992,430	+				+0.9
1,992,430	+				-2.0
1,992,430	+				-0.1
1,992,430	+				-0.1
1,992,430	+				+1.4
1,992,430	+				-0.5
1,992,430	+				-2.0
1,992,430	+				-0.1
1,992,430	+				-0.4
1,992,430	+				+0.1
1,992,430	+				-1.3
1,992,430	+				+0.3
1,992,430	+				-0.4
1,992,430	+				+0.1
1,992,430	+				+1.3
1,992,430	+				+1.8
1,992,430	+				+2.3
1,992,430	+				-3.5
1,992,430	+				-1.0
1,992,430	+				+0.2
1,992,430	+				+0.9
1,992,430	+				+2.5
1,992,430	+				+1.1
1,992,430	+				+1.1
1,992,430	+				+1.7
1,992,430	+				+1.4
1,992,431	-		EFB2_01878	0.10	-0.7
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1,993,543	-				-2.4
1,993,543	-				-1.6
1,993,543	-				-0.6
1,993,543	-				-0.5
1,993,543	-				-0.1
1,993,543	-				-0.3
1,993,543	-				-0.7
1,993,543	-				-0.2
1,993,543	-				-0.2
1,993,543	-				+1.6
1,993,543	-				-0.7
1,993,543	-				+0.2
1,993,543	-				-0.6
1,993,543	-				-0.8
1,993,543	-				+0.7
1,993,543	-				+2.0
1,993,543	-				-2.4
1,993,543	-				-1.5
1,993,543	-				+1.8
1,993,543	-				+0.8
1,993,543	-				-3.4
1,993,545	+				+1.7
1,993,545	+				+0.4
1,993,545	+				-2.9
1,993,545	+				-0.3
1,993,545	+				+2.9
1,993,545	+				-1.6
1,993,545	+				+1.1
1,993,545	+				-0.8
1,993,545	+				+2.2
1,993,545	+				-2.2
1,993,545	+				+2.1
1,993,545	+				-0.7
1,993,545	+				-0.7
1,993,545	+				+0.1
1,993,545	+				+1.7
1,993,545	+				+2.3
1,993,545	+				-0.5
1,993,545	+				+1.8
1,993,545	+				-1.6
1,993,545	+				-2.8
1,993,545	+				+1.0
1,993,545	+				-1.3
1,993,545	+				-1.5
1,993,545	+				-1.5
1,993,545	+				-0.6
1,993,545	+				+2.7
1,993,545	+				-0.3
1,993,545	+				+0.8
1,993,545	+				-2.1
1,993,545	+				+0.2
1,993,545	+				+0.4
1,993,545	+				-2.3
1,993,545	+				+0.5
1,993,545	+				-0.8
1,993,545	+				+1.7
1,993,545	+				-1.8
1,993,545	+				-0.8
1,993,545	+				+1.4
1,993,545	+				+0.8
1,993,545	+				-2.0
1,993,545	+				+1.0
1,993,545	+				+1.9
1,993,545	+				-3.3
1,993,545	+				-1.3
1,993,545	+				+0.2
1,993,545	+				-0.3
1,993,545	+				-2.9
1,993,545	+				+0.5
1,993,545	+				-0.4
1,993,545	+				+1.5
1,993,545	+				-0.5
1,993,545	+				+0.4
1,993,545	+				-1.3
1,993,545	+				+1.3
1,993,545	+				-0.6
1,993,545	+				-0.7
1,993,545	+				+0.2
1,993,545	+				-0.1
1,993,545	+				+2.2
1,993,545	+				-0.2
1,993,545	+				-0.3
1,993,545	+				-0.4
1,993,545	+				-0.1
1,993,545	+				+0.6
1,993,545	+				-1.1
1,993,545	+				+0.7
1,993,546	-				+0.5
1,993,546	-				-3.3
1,993,546	-				+1.2
1,993,546	-				+0.6
1,993,546	-				+1.1
1,993,546	-				+1.1
1,993,546	-				-1.1
1,993,546	-				+0.8
1,993,546	-				-0.4
1,993,546	-				+1.0
1,993,546	-				-0.6
1,993,546	-				-0.4
1,993,546	-				-0.1
1,993,546	-				+0.7
1,993,546	-				+1.6
1,993,546	-				-2.4
1,993,546	-				-1.7
1,993,546	-				+0.0
1,993,546	-				-0.5
1,993,546	-				+1.4
1,993,546	-				-0.6
1,993,546	-				-1.4
1,993,546	-				+0.6
1,993,546	-				+1.4
1,993,546	-				+0.0
1,993,546	-				-1.6
1,993,546	-				+1.2
1,993,546	-				-0.1
1,993,546	-				-2.6
1,993,546	-				-2.3
1,993,546	-				+1.2
1,993,546	-				-2.2
1,993,546	-				+1.2
1,993,546	-				+0.3
1,993,546	-				+0.3
1,993,546	-				-0.9
1,993,546	-				+1.1
1,993,546	-				-1.9
1,993,546	-				-0.4
1,993,546	-				-1.8
1,993,546	-				+0.0
1,993,546	-				-1.2
1,993,546	-				-3.5
1,993,546	-				-1.1
1,993,546	-				-0.2
1,993,546	-				-2.3
1,993,546	-				+0.3
1,993,546	-				-0.6
1,993,546	-				-1.0
1,993,546	-				+1.1
1,993,546	-				+0.3
1,993,546	-				+1.2
1,993,546	-				+1.6
1,993,546	-				+2.2
1,993,546	-				-0.3
1,993,546	-				-2.0
1,993,546	-				+1.4
1,993,546	-				-0.4
1,993,546	-				-1.3
1,993,546	-				+0.9
1,993,546	-				-3.1
1,993,546	-				+0.9
1,993,546	-				-0.3
1,993,546	-				-0.0
1,993,546	-				+1.1
1,993,546	-				+1.2
1,993,546	-				-3.2
1,993,546	-				-2.0
1,993,546	-				-0.9
1,993,546	-				-0.4
1,993,546	-				+1.5
1,993,549	+				-1.3
1,993,549	+				-0.4
1,993,549	+				-0.5
1,993,549	+				-1.3
1,993,549	+				+1.0
1,993,550	-				-2.0
1,993,550	-				-2.8
1,993,550	-				+1.6
1,993,550	-				+2.3
1,993,550	-				+1.7
1,993,550	-				+0.9
1,993,575	+				-0.3
1,993,576	-				+1.0
1,993,576	-				-2.1
1,993,607	+		EFB2_01880	0.15	+0.5
1,993,607	+		EFB2_01880	0.15	+2.9
1,993,607	+		EFB2_01880	0.15	+1.2
1,993,607	+		EFB2_01880	0.15	+0.5
1,993,607	+		EFB2_01880	0.15	+1.8
1,993,607	+		EFB2_01880	0.15	-0.4
1,993,608	-		EFB2_01880	0.15	+1.5
1,993,608	-		EFB2_01880	0.15	-2.7
1,993,608	-		EFB2_01880	0.15	-1.0