Strain Fitness in Escherichia fergusonii Becca around EFB2_01369

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
1,417,266	+		EFB2_01368	0.52	+0.7
1,417,266	+		EFB2_01368	0.52	-1.0
1,417,267	-		EFB2_01368	0.52	+1.4
1,417,290	+		EFB2_01368	0.55	+0.6
1,417,290	+		EFB2_01368	0.55	+1.7
1,417,291	-		EFB2_01368	0.55	-2.8
1,417,294	-		EFB2_01368	0.55	-1.0
1,417,336	+		EFB2_01368	0.61	+0.7
1,417,337	-		EFB2_01368	0.61	-2.1
1,417,337	-		EFB2_01368	0.61	-0.5
1,417,345	-		EFB2_01368	0.62	-1.7
1,417,345	-		EFB2_01368	0.62	-1.4
1,417,348	+		EFB2_01368	0.62	+2.0
1,417,348	+		EFB2_01368	0.62	-3.5
1,417,348	+		EFB2_01368	0.62	+0.8
1,417,348	+		EFB2_01368	0.62	-0.7
1,417,349	-		EFB2_01368	0.63	-2.0
1,417,349	-		EFB2_01368	0.63	+1.1
1,417,357	+		EFB2_01368	0.64	+1.2
1,417,357	+		EFB2_01368	0.64	+0.4
1,417,358	-		EFB2_01368	0.64	+0.2
1,417,358	-		EFB2_01368	0.64	-0.4
1,417,378	+		EFB2_01368	0.66	-0.8
1,417,378	+		EFB2_01368	0.66	+1.5
1,417,379	-		EFB2_01368	0.66	+2.2
1,417,379	-		EFB2_01368	0.66	-0.8
1,417,391	-		EFB2_01368	0.68	+1.0
1,417,391	-		EFB2_01368	0.68	-1.3
1,417,414	+		EFB2_01368	0.71	+0.1
1,417,414	+		EFB2_01368	0.71	+0.3
1,417,414	+		EFB2_01368	0.71	-0.2
1,417,414	+		EFB2_01368	0.71	-2.5
1,417,414	+		EFB2_01368	0.71	+0.4
1,417,415	-		EFB2_01368	0.71	+0.8
1,417,415	-		EFB2_01368	0.71	+1.9
1,417,415	-		EFB2_01368	0.71	+0.3
1,417,415	-		EFB2_01368	0.71	+0.9
1,417,419	+		EFB2_01368	0.72	+1.8
1,417,420	-		EFB2_01368	0.72	+0.5
1,417,420	-		EFB2_01368	0.72	+0.7
1,417,420	-		EFB2_01368	0.72	+2.8
1,417,420	-		EFB2_01368	0.72	-0.1
1,417,420	-		EFB2_01368	0.72	+1.7
1,417,420	-		EFB2_01368	0.72	+1.5
1,417,424	-		EFB2_01368	0.72	+0.4
1,417,424	-		EFB2_01368	0.72	+0.1
1,417,424	-		EFB2_01368	0.72	+0.5
1,417,424	-		EFB2_01368	0.72	-0.7
1,417,424	-		EFB2_01368	0.72	-1.1
1,417,459	+		EFB2_01368	0.77	-0.1
1,417,460	-		EFB2_01368	0.77	+1.6
1,417,480	-		EFB2_01368	0.79	+0.1
1,417,480	-		EFB2_01368	0.79	-0.7
1,417,489	+		EFB2_01368	0.81	+0.8
1,417,489	+		EFB2_01368	0.81	+0.8
1,417,489	+		EFB2_01368	0.81	-2.9
1,417,490	-		EFB2_01368	0.81	-0.8
1,417,490	-		EFB2_01368	0.81	-1.4
1,417,494	+		EFB2_01368	0.81	+0.5
1,417,494	+		EFB2_01368	0.81	-0.4
1,417,494	+		EFB2_01368	0.81	-2.1
1,417,494	+		EFB2_01368	0.81	+1.6
1,417,494	+		EFB2_01368	0.81	-2.3
1,417,494	+		EFB2_01368	0.81	+0.6
1,417,495	-		EFB2_01368	0.81	+0.1
1,417,495	-		EFB2_01368	0.81	-1.3
1,417,495	-		EFB2_01368	0.81	-0.2
1,417,495	-		EFB2_01368	0.81	-1.0
1,417,516	+		EFB2_01368	0.84	-1.1
1,417,516	+		EFB2_01368	0.84	+0.7
1,417,516	+		EFB2_01368	0.84	-0.2
1,417,547	-		EFB2_01368	0.88	+0.3
1,417,549	+		EFB2_01368	0.88	+0.5
1,417,549	+		EFB2_01368	0.88	+1.0
1,417,549	+		EFB2_01368	0.88	+1.4
1,417,550	-		EFB2_01368	0.88	-2.5
1,417,550	-		EFB2_01368	0.88	+0.2
1,417,558	+		EFB2_01368	0.89	+1.4
1,417,558	+		EFB2_01368	0.89	+0.0
1,417,558	+		EFB2_01368	0.89	+0.4
1,417,570	+				+1.5
1,417,570	+				-3.2
1,417,570	+				+0.6
1,417,571	-				-1.7
1,417,571	-				-0.6
1,417,571	-				-0.2
1,417,571	-				-0.8
1,417,571	-				+1.0
1,417,571	-				-0.6
1,417,571	-				-2.7
1,417,583	+				+2.4
1,417,583	+				-0.5
1,417,583	+				-0.8
1,417,583	+				+1.1
1,417,583	+				+1.2
1,417,583	+				-2.5
1,417,583	+				+1.2
1,417,583	+				-1.0
1,417,583	+				-1.3
1,417,583	+				-1.2
1,417,583	+				-0.2
1,417,584	-				+1.8
1,417,584	-				-0.9
1,417,584	-				+0.3
1,417,584	-				+1.7
1,417,584	-				-0.8
1,417,584	-				-0.8
1,417,584	-				-0.4
1,417,584	-				-0.1
1,417,584	-				+1.0
1,417,584	-				+0.2
1,417,587	+				-3.0
1,417,619	-				+0.3
1,417,632	+				-0.9
1,417,638	-				-0.4
1,417,672	+				+1.5
1,417,672	+				-1.9
1,417,672	+				-0.1
1,417,673	-				+0.5
1,417,705	-				+2.4
1,417,733	+				+0.2
1,417,733	+				+0.7
1,417,733	+				+0.2
1,417,733	+				-3.1
1,417,733	+				+0.3
1,417,733	+				-0.3
1,417,733	+				-0.4
1,417,733	+				-0.1
1,417,734	-				-0.1
1,417,734	-				-0.7
1,417,734	-				+0.9
1,417,734	-				+1.7
1,417,734	-				-0.7
1,417,734	-				-0.5
1,417,734	-				+1.6
1,417,738	-				-0.0
1,417,738	-				+0.5
1,417,738	-				-0.8
1,417,766	+				+1.5
1,417,766	+				-0.7
1,417,766	+				-0.8
1,417,766	+				-2.7
1,417,766	+				+0.2
1,417,766	+				-1.9
1,417,766	+				-1.3
1,417,766	+				+2.0
1,417,766	+				-0.5
1,417,767	-				+0.9
1,417,767	-				+0.6
1,417,767	-				+0.3
1,417,767	-				-1.6
1,417,767	-				-0.1
1,417,767	-				-1.9
1,417,767	-				+0.9
1,417,767	-				+0.8
1,417,767	-				+1.7
1,417,770	+				+0.8
1,417,770	+				+1.4
1,417,770	+				-1.3
1,417,770	+				-2.2
1,417,770	+				-0.1
1,417,770	+				+2.0
1,417,770	+				-1.3
1,417,770	+				+0.1
1,417,771	-				-2.3
1,417,771	-				-1.1
1,417,771	-				+0.5
1,417,771	-				+2.4
1,417,771	-				-2.4
1,417,771	-				+1.2
1,417,771	-				+0.4
1,417,775	+				-1.0
1,417,776	-				+0.8
1,417,776	-				-1.9
1,417,788	+				-1.8
1,417,788	+				+2.1
1,417,788	+				+0.1
1,417,788	+				+2.5
1,417,788	+				-1.1
1,417,788	+				-0.1
1,417,788	+				-0.1
1,417,788	+				-1.4
1,417,788	+				-0.4
1,417,788	+				+0.9
1,417,788	+				-0.6
1,417,788	+				+1.6
1,417,789	-				-0.5
1,417,789	-				+0.3
1,417,789	-				+0.2
1,417,789	-				-0.5
1,417,789	-				+0.3
1,417,789	-				+1.7
1,417,789	-				-0.5
1,417,880	+				-1.8
1,417,881	-				+0.2
1,417,904	+				+0.6
1,417,905	-				-1.5
1,417,950	-				-2.8
1,417,952	+				+2.2
1,417,952	+				-0.8
1,417,953	-				+1.2
1,417,953	-				-0.9
1,417,953	-				-0.5
1,417,953	-				-0.9
1,417,957	+				-1.9
1,417,957	+				+0.2
1,417,958	-				+0.3
1,417,958	-				-0.5
1,417,958	-				+0.7
1,417,958	-				-1.4
1,417,961	+				+1.2
1,417,962	-				+0.2
1,417,962	-				+0.5
1,417,972	+				+0.5
1,417,972	+				+0.3
1,417,972	+				-1.0
1,417,972	+				-0.2
1,417,973	-				+1.1
1,417,973	-				-0.6
1,417,973	-				-3.3
1,418,001	+				+0.9
1,418,001	+				+0.5
1,418,001	+				+1.0
1,418,002	-				-1.9
1,418,002	-				-2.5
1,418,092	-				-0.2
1,418,119	+				+0.1
1,418,129	+				+1.4
1,418,129	+				-0.1
1,418,129	+				+0.4
1,418,129	+				+0.9
1,418,129	+				-1.4
1,418,130	-				-1.0
1,418,137	+				+1.0
1,418,137	+				-2.2
1,418,137	+				+1.3
1,418,138	-				+2.2
1,418,138	-				+0.0
1,418,138	-				+0.9
1,418,138	-				+0.1
1,418,138	-				+0.4
1,418,157	+				+0.3
1,418,197	+				+0.9
1,418,197	+				-1.6
1,418,198	-				-1.3
1,418,256	+		EFB2_01369	0.14	-0.8
1,418,256	+		EFB2_01369	0.14	+0.5
1,418,256	+		EFB2_01369	0.14	-0.1
1,418,256	+		EFB2_01369	0.14	+1.5
1,418,256	+		EFB2_01369	0.14	-1.4
1,418,256	+		EFB2_01369	0.14	-0.7
1,418,257	-		EFB2_01369	0.14	-0.9
1,418,293	+		EFB2_01369	0.19	+0.6
1,418,293	+		EFB2_01369	0.19	-0.1
1,418,293	+		EFB2_01369	0.19	+1.4
1,418,293	+		EFB2_01369	0.19	+0.6
1,418,293	+		EFB2_01369	0.19	-0.8
1,418,293	+		EFB2_01369	0.19	+0.9
1,418,293	+		EFB2_01369	0.19	+1.2
1,418,294	-		EFB2_01369	0.19	+0.6
1,418,294	-		EFB2_01369	0.19	+1.3
1,418,294	-		EFB2_01369	0.19	+1.8
1,418,294	-		EFB2_01369	0.19	+1.0
1,418,294	-		EFB2_01369	0.19	-3.2
1,418,294	-		EFB2_01369	0.19	+1.3
1,418,294	-		EFB2_01369	0.19	+1.1
1,418,294	-		EFB2_01369	0.19	-1.4
1,418,294	-		EFB2_01369	0.19	+0.4
1,418,294	-		EFB2_01369	0.19	-0.7
1,418,294	-		EFB2_01369	0.19	+0.3
1,418,316	+		EFB2_01369	0.21	-1.1
1,418,343	+		EFB2_01369	0.24	-1.1
1,418,344	-		EFB2_01369	0.25	+1.2
1,418,396	+		EFB2_01369	0.31	-1.5
1,418,396	+		EFB2_01369	0.31	+0.5
1,418,396	+		EFB2_01369	0.31	+1.9
1,418,397	-		EFB2_01369	0.31	+2.4
1,418,397	-		EFB2_01369	0.31	-0.8
1,418,397	-		EFB2_01369	0.31	-1.9
1,418,397	-		EFB2_01369	0.31	-1.1
1,418,397	-		EFB2_01369	0.31	-2.3
1,418,397	-		EFB2_01369	0.31	-1.1
1,418,409	+		EFB2_01369	0.32	-0.4
1,418,441	+		EFB2_01369	0.36	+0.7
1,418,441	+		EFB2_01369	0.36	-0.8
1,418,441	+		EFB2_01369	0.36	+1.6
1,418,442	-		EFB2_01369	0.36	-0.1
1,418,468	+		EFB2_01369	0.39	-1.1
1,418,468	+		EFB2_01369	0.39	+0.4
1,418,480	+		EFB2_01369	0.41	+0.2
1,418,480	+		EFB2_01369	0.41	-1.8
1,418,480	+		EFB2_01369	0.41	-1.6
1,418,481	-		EFB2_01369	0.41	+1.9
1,418,481	-		EFB2_01369	0.41	-1.1
1,418,502	+		EFB2_01369	0.43	-3.1
1,418,502	+		EFB2_01369	0.43	+0.5
1,418,502	+		EFB2_01369	0.43	+1.2
1,418,502	+		EFB2_01369	0.43	+1.0
1,418,502	+		EFB2_01369	0.43	+0.3
1,418,502	+		EFB2_01369	0.43	+0.4
1,418,502	+		EFB2_01369	0.43	+0.5
1,418,502	+		EFB2_01369	0.43	+0.6
1,418,502	+		EFB2_01369	0.43	+1.0
1,418,503	-		EFB2_01369	0.43	-0.0
1,418,503	-		EFB2_01369	0.43	+1.2
1,418,503	-		EFB2_01369	0.43	+0.0
1,418,503	-		EFB2_01369	0.43	+0.2
1,418,503	-		EFB2_01369	0.43	+2.9
1,418,503	-		EFB2_01369	0.43	-0.2
1,418,503	-		EFB2_01369	0.43	-0.6
1,418,503	-		EFB2_01369	0.43	+0.6
1,418,503	-		EFB2_01369	0.43	-0.7
1,418,503	-		EFB2_01369	0.43	-0.6
1,418,503	-		EFB2_01369	0.43	+1.1
1,418,503	-		EFB2_01369	0.43	+0.1
1,418,503	-		EFB2_01369	0.43	-2.2
1,418,503	-		EFB2_01369	0.43	+1.4
1,418,503	-		EFB2_01369	0.43	+0.9
1,418,503	-		EFB2_01369	0.43	+5.5
1,418,503	-		EFB2_01369	0.43	+0.9
1,418,503	-		EFB2_01369	0.43	-0.5
1,418,511	+		EFB2_01369	0.44	-2.9
1,418,512	-		EFB2_01369	0.44	-2.5
1,418,512	-		EFB2_01369	0.44	-1.3
1,418,568	+		EFB2_01369	0.51	+1.2
1,418,568	+		EFB2_01369	0.51	+0.1
1,418,569	-		EFB2_01369	0.51	-0.5
1,418,569	-		EFB2_01369	0.51	+0.4
1,418,583	+		EFB2_01369	0.53	+2.3
1,418,583	+		EFB2_01369	0.53	+0.2
1,418,583	+		EFB2_01369	0.53	-1.7
1,418,583	+		EFB2_01369	0.53	-1.4
1,418,583	+		EFB2_01369	0.53	-0.2
1,418,583	+		EFB2_01369	0.53	-1.4
1,418,584	-		EFB2_01369	0.53	-0.0
1,418,584	-		EFB2_01369	0.53	-0.5
1,418,584	-		EFB2_01369	0.53	-1.8
1,418,584	-		EFB2_01369	0.53	-2.0
1,418,584	-		EFB2_01369	0.53	+1.1
1,418,584	-		EFB2_01369	0.53	+1.0
1,418,586	+		EFB2_01369	0.53	-2.3
1,418,586	+		EFB2_01369	0.53	+0.2
1,418,587	-		EFB2_01369	0.53	+0.1
1,418,587	-		EFB2_01369	0.53	+0.1
1,418,643	+		EFB2_01369	0.60	-0.6
1,418,643	+		EFB2_01369	0.60	+1.2
1,418,643	+		EFB2_01369	0.60	+0.4
1,418,644	-		EFB2_01369	0.60	-0.4
1,418,693	+		EFB2_01369	0.66	+0.0
1,418,694	-		EFB2_01369	0.66	-0.4
1,418,694	-		EFB2_01369	0.66	-1.1
1,418,694	-		EFB2_01369	0.66	+1.9
1,418,704	+		EFB2_01369	0.67	+0.1
1,418,705	-		EFB2_01369	0.67	-0.1
1,418,721	-		EFB2_01369	0.69	-3.0
1,418,721	-		EFB2_01369	0.69	+1.1
1,418,736	+		EFB2_01369	0.71	+0.5
1,418,843	+		EFB2_01369	0.84	+0.6
1,418,843	+		EFB2_01369	0.84	+2.8
1,418,843	+		EFB2_01369	0.84	-0.2
1,418,843	+		EFB2_01369	0.84	+0.9
1,418,844	-		EFB2_01369	0.84	-0.1
1,418,844	-		EFB2_01369	0.84	+0.3
1,418,844	-		EFB2_01369	0.84	+0.3
1,418,844	-		EFB2_01369	0.84	-1.4
1,418,844	-		EFB2_01369	0.84	+0.5
1,418,844	-		EFB2_01369	0.84	+2.2
1,418,854	+		EFB2_01369	0.85	-3.3
1,418,855	+		EFB2_01369	0.85	+0.6
1,418,855	+		EFB2_01369	0.85	+0.8
1,418,855	+		EFB2_01369	0.85	+2.3
1,418,855	+		EFB2_01369	0.85	-0.3
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