Strain Fitness in Escherichia fergusonii Becca around EFB2_03782

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,963,713	-		EFB2_03781	0.27	+0.2
3,963,713	-		EFB2_03781	0.27	-2.4
3,963,719	+		EFB2_03781	0.28	+0.7
3,963,719	+		EFB2_03781	0.28	+0.1
3,963,720	-		EFB2_03781	0.28	-2.0
3,963,720	-		EFB2_03781	0.28	-1.4
3,963,765	+		EFB2_03781	0.32	-2.0
3,963,765	+		EFB2_03781	0.32	-3.2
3,963,766	-		EFB2_03781	0.32	+0.3
3,963,766	-		EFB2_03781	0.32	-1.1
3,963,787	+		EFB2_03781	0.33	-0.1
3,963,839	+		EFB2_03781	0.38	-0.8
3,963,839	+		EFB2_03781	0.38	-2.6
3,963,839	+		EFB2_03781	0.38	-3.2
3,963,839	+		EFB2_03781	0.38	+0.2
3,963,839	+		EFB2_03781	0.38	+0.3
3,963,839	+		EFB2_03781	0.38	+2.3
3,963,839	+		EFB2_03781	0.38	-1.4
3,963,839	+		EFB2_03781	0.38	-0.4
3,963,840	-		EFB2_03781	0.38	-1.1
3,963,840	-		EFB2_03781	0.38	-0.4
3,963,840	-		EFB2_03781	0.38	-0.2
3,963,840	-		EFB2_03781	0.38	-0.9
3,963,840	-		EFB2_03781	0.38	+1.3
3,963,840	-		EFB2_03781	0.38	-2.5
3,963,857	+		EFB2_03781	0.39	-2.3
3,963,928	+		EFB2_03781	0.45	-1.1
3,963,928	+		EFB2_03781	0.45	-1.2
3,963,929	-		EFB2_03781	0.45	+0.2
3,963,929	-		EFB2_03781	0.45	+0.1
3,963,929	-		EFB2_03781	0.45	-0.7
3,963,929	-		EFB2_03781	0.45	+0.4
3,963,930	-		EFB2_03781	0.45	-1.0
3,963,934	+		EFB2_03781	0.45	+0.2
3,963,934	+		EFB2_03781	0.45	+0.3
3,963,935	-		EFB2_03781	0.45	-0.0
3,963,935	-		EFB2_03781	0.45	+1.3
3,963,935	-		EFB2_03781	0.45	-0.8
3,963,935	-		EFB2_03781	0.45	-0.7
3,963,935	-		EFB2_03781	0.45	-1.8
3,963,935	-		EFB2_03781	0.45	-0.8
3,963,943	+		EFB2_03781	0.46	-0.5
3,963,943	+		EFB2_03781	0.46	-0.2
3,963,943	+		EFB2_03781	0.46	+0.2
3,963,943	+		EFB2_03781	0.46	-0.8
3,963,943	+		EFB2_03781	0.46	+0.9
3,963,943	+		EFB2_03781	0.46	-2.2
3,963,943	+		EFB2_03781	0.46	-0.8
3,963,943	+		EFB2_03781	0.46	-0.8
3,963,943	+		EFB2_03781	0.46	-2.7
3,963,943	+		EFB2_03781	0.46	-0.5
3,963,943	+		EFB2_03781	0.46	-1.5
3,963,943	+		EFB2_03781	0.46	-1.4
3,963,943	+		EFB2_03781	0.46	-0.2
3,963,943	+		EFB2_03781	0.46	+0.9
3,963,943	+		EFB2_03781	0.46	-0.4
3,963,944	-		EFB2_03781	0.46	+3.0
3,963,944	-		EFB2_03781	0.46	+0.5
3,963,944	-		EFB2_03781	0.46	+0.8
3,963,944	-		EFB2_03781	0.46	+0.2
3,963,944	-		EFB2_03781	0.46	-1.0
3,963,944	-		EFB2_03781	0.46	+0.4
3,963,944	-		EFB2_03781	0.46	-0.3
3,963,944	-		EFB2_03781	0.46	-1.5
3,963,944	-		EFB2_03781	0.46	+1.3
3,963,944	-		EFB2_03781	0.46	+0.1
3,963,944	-		EFB2_03781	0.46	-0.9
3,963,944	-		EFB2_03781	0.46	+0.7
3,963,944	-		EFB2_03781	0.46	+0.0
3,963,944	-		EFB2_03781	0.46	-1.2
3,963,944	-		EFB2_03781	0.46	-0.5
3,963,944	-		EFB2_03781	0.46	-0.1
3,963,944	-		EFB2_03781	0.46	-2.0
3,963,944	-		EFB2_03781	0.46	-1.5
3,963,944	-		EFB2_03781	0.46	-0.5
3,963,944	-		EFB2_03781	0.46	-0.1
3,963,944	-		EFB2_03781	0.46	-1.4
3,963,944	-		EFB2_03781	0.46	-0.8
3,963,944	-		EFB2_03781	0.46	+0.2
3,963,966	+		EFB2_03781	0.48	-1.5
3,963,966	+		EFB2_03781	0.48	-0.0
3,963,967	-		EFB2_03781	0.48	-0.1
3,963,975	+		EFB2_03781	0.49	-0.5
3,963,975	+		EFB2_03781	0.49	-0.4
3,963,975	+		EFB2_03781	0.49	-1.8
3,963,975	+		EFB2_03781	0.49	-1.5
3,963,976	-		EFB2_03781	0.49	-0.7
3,963,976	-		EFB2_03781	0.49	-2.7
3,963,976	-		EFB2_03781	0.49	-1.2
3,963,976	-		EFB2_03781	0.49	-0.3
3,963,976	-		EFB2_03781	0.49	+0.0
3,963,976	-		EFB2_03781	0.49	-0.0
3,963,976	-		EFB2_03781	0.49	-2.4
3,963,976	-		EFB2_03781	0.49	-2.6
3,963,976	-		EFB2_03781	0.49	-0.5
3,963,984	+		EFB2_03781	0.49	-0.5
3,963,984	+		EFB2_03781	0.49	-3.5
3,963,984	+		EFB2_03781	0.49	+0.4
3,963,984	+		EFB2_03781	0.49	+0.3
3,963,984	+		EFB2_03781	0.49	-1.1
3,963,985	-		EFB2_03781	0.49	-1.5
3,963,985	-		EFB2_03781	0.49	-2.8
3,963,985	-		EFB2_03781	0.49	-0.8
3,963,985	-		EFB2_03781	0.49	-0.5
3,963,985	-		EFB2_03781	0.49	+0.5
3,963,985	-		EFB2_03781	0.49	+0.3
3,963,985	-		EFB2_03781	0.49	+0.9
3,963,987	+		EFB2_03781	0.49	+0.3
3,963,987	+		EFB2_03781	0.49	+1.3
3,963,987	+		EFB2_03781	0.49	-0.4
3,963,987	+		EFB2_03781	0.49	-2.3
3,963,987	+		EFB2_03781	0.49	-3.5
3,963,988	-		EFB2_03781	0.50	+0.0
3,963,988	-		EFB2_03781	0.50	-1.5
3,963,988	-		EFB2_03781	0.50	+0.2
3,963,988	-		EFB2_03781	0.50	+0.2
3,963,988	-		EFB2_03781	0.50	-2.0
3,963,988	-		EFB2_03781	0.50	+2.6
3,963,988	-		EFB2_03781	0.50	-3.5
3,963,988	-		EFB2_03781	0.50	-1.6
3,963,988	-		EFB2_03781	0.50	-0.5
3,963,988	-		EFB2_03781	0.50	+1.5
3,964,022	+		EFB2_03781	0.52	+1.1
3,964,022	+		EFB2_03781	0.52	-2.5
3,964,022	+		EFB2_03781	0.52	-2.6
3,964,022	+		EFB2_03781	0.52	+0.5
3,964,022	+		EFB2_03781	0.52	-1.2
3,964,022	+		EFB2_03781	0.52	-0.1
3,964,022	+		EFB2_03781	0.52	+0.6
3,964,022	+		EFB2_03781	0.52	+0.2
3,964,022	+		EFB2_03781	0.52	-0.2
3,964,023	-		EFB2_03781	0.52	-0.7
3,964,023	-		EFB2_03781	0.52	+0.4
3,964,023	-		EFB2_03781	0.52	-2.6
3,964,023	-		EFB2_03781	0.52	-0.2
3,964,023	-		EFB2_03781	0.52	-4.3
3,964,023	-		EFB2_03781	0.52	-2.8
3,964,023	-		EFB2_03781	0.52	+0.0
3,964,023	-		EFB2_03781	0.52	-2.1
3,964,023	-		EFB2_03781	0.52	+0.3
3,964,025	+		EFB2_03781	0.53	+2.5
3,964,025	+		EFB2_03781	0.53	-0.7
3,964,026	-		EFB2_03781	0.53	-0.4
3,964,026	-		EFB2_03781	0.53	+0.1
3,964,026	-		EFB2_03781	0.53	-0.2
3,964,057	+		EFB2_03781	0.55	-1.0
3,964,207	-		EFB2_03781	0.67	-0.6
3,964,207	-		EFB2_03781	0.67	+0.4
3,964,221	+		EFB2_03781	0.68	+1.3
3,964,221	+		EFB2_03781	0.68	+0.3
3,964,221	+		EFB2_03781	0.68	+1.0
3,964,221	+		EFB2_03781	0.68	-0.7
3,964,221	+		EFB2_03781	0.68	+1.4
3,964,221	+		EFB2_03781	0.68	-2.8
3,964,222	-		EFB2_03781	0.68	+0.2
3,964,222	-		EFB2_03781	0.68	-2.4
3,964,222	-		EFB2_03781	0.68	-1.1
3,964,222	-		EFB2_03781	0.68	-2.9
3,964,222	-		EFB2_03781	0.68	-2.2
3,964,222	-		EFB2_03781	0.68	-1.4
3,964,228	+		EFB2_03781	0.69	-0.0
3,964,229	-		EFB2_03781	0.69	-2.7
3,964,229	-		EFB2_03781	0.69	-0.4
3,964,229	-		EFB2_03781	0.69	+0.0
3,964,309	+		EFB2_03781	0.75	+0.1
3,964,320	+		EFB2_03781	0.76	-2.0
3,964,320	+		EFB2_03781	0.76	+0.8
3,964,321	-		EFB2_03781	0.76	+0.6
3,964,321	-		EFB2_03781	0.76	+0.5
3,964,321	-		EFB2_03781	0.76	+0.3
3,964,355	-		EFB2_03781	0.79	-0.2
3,964,359	+		EFB2_03781	0.79	-1.5
3,964,359	+		EFB2_03781	0.79	-1.8
3,964,359	+		EFB2_03781	0.79	-0.8
3,964,360	-		EFB2_03781	0.79	-0.0
3,964,360	-		EFB2_03781	0.79	+1.6
3,964,360	-		EFB2_03781	0.79	-2.2
3,964,361	+		EFB2_03781	0.80	+0.9
3,964,361	+		EFB2_03781	0.80	-1.1
3,964,361	+		EFB2_03781	0.80	+0.8
3,964,361	+		EFB2_03781	0.80	-2.7
3,964,361	+		EFB2_03781	0.80	+1.3
3,964,362	-		EFB2_03781	0.80	-0.2
3,964,362	-		EFB2_03781	0.80	+1.2
3,964,362	-		EFB2_03781	0.80	-0.4
3,964,362	-		EFB2_03781	0.80	-1.9
3,964,362	-		EFB2_03781	0.80	-0.5
3,964,375	+		EFB2_03781	0.81	-1.7
3,964,375	+		EFB2_03781	0.81	-0.2
3,964,376	-		EFB2_03781	0.81	-0.5
3,964,399	+		EFB2_03781	0.83	-1.2
3,964,399	+		EFB2_03781	0.83	-0.2
3,964,399	+		EFB2_03781	0.83	+0.4
3,964,399	+		EFB2_03781	0.83	-0.2
3,964,400	-		EFB2_03781	0.83	+0.3
3,964,400	-		EFB2_03781	0.83	-0.1
3,964,492	+				-1.1
3,964,492	+				-1.7
3,964,492	+				+2.2
3,964,492	+				+0.6
3,964,492	+				-1.0
3,964,492	+				+0.1
3,964,492	+				-0.1
3,964,492	+				-1.0
3,964,493	-				-2.5
3,964,493	-				+0.5
3,964,534	+				-2.1
3,964,547	+				-0.1
3,964,547	+				-0.6
3,964,548	-				-2.0
3,964,548	-				-2.8
3,964,570	+				+0.1
3,964,633	+				-1.4
3,964,633	+				+1.3
3,964,633	+				-0.7
3,964,633	+				-2.1
3,964,633	+				-0.1
3,964,633	+				-3.2
3,964,633	+				-0.4
3,964,634	-				-1.0
3,964,634	-				+0.4
3,964,634	-				+0.2
3,964,634	-				-3.3
3,964,634	-				+0.2
3,964,637	+				+0.0
3,964,637	+				-1.2
3,964,637	+				+1.0
3,964,637	+				-1.4
3,964,637	+				+0.3
3,964,637	+				-1.2
3,964,637	+				-0.9
3,964,637	+				+1.5
3,964,638	-				+0.8
3,964,638	-				+1.8
3,964,638	-				+0.6
3,964,638	-				-1.0
3,964,638	-				-1.1
3,964,647	+				-1.8
3,964,647	+				-2.4
3,964,647	+				+0.0
3,964,647	+				-0.1
3,964,647	+				-2.3
3,964,647	+				-0.0
3,964,647	+				+0.8
3,964,647	+				+1.0
3,964,648	-				+1.0
3,964,648	-				-0.1
3,964,648	-				-1.6
3,964,648	-				+1.0
3,964,648	-				+0.4
3,964,648	-				+0.9
3,964,648	-				+0.9
3,964,648	-				-0.8
3,964,648	-				-1.0
3,964,648	-				-3.0
3,964,648	-				-1.2
3,964,648	-				+0.5
3,964,648	-				-1.9
3,964,648	-				-0.4
3,964,648	-				-1.3
3,964,648	-				+0.3
3,964,648	-				-0.4
3,964,648	-				+1.9
3,964,648	-				-3.3
3,964,648	-				+3.6
3,964,652	+				-0.8
3,964,652	+				-0.3
3,964,652	+				-0.4
3,964,667	+				+0.3
3,964,667	+				-1.1
3,964,668	-				-1.4
3,964,735	-				+0.7
3,964,792	+		EFB2_03782	0.19	+0.3
3,964,792	+		EFB2_03782	0.19	-1.5
3,964,793	-		EFB2_03782	0.19	+0.5
3,964,855	+		EFB2_03782	0.32	-0.4
3,964,856	-		EFB2_03782	0.32	-1.4
3,964,856	-		EFB2_03782	0.32	+0.1
3,964,881	-		EFB2_03782	0.38	+0.0
3,964,881	-		EFB2_03782	0.38	+0.8
3,964,889	+		EFB2_03782	0.40	-3.0
3,964,889	+		EFB2_03782	0.40	-2.7
3,964,890	-		EFB2_03782	0.40	-0.5
3,964,893	+		EFB2_03782	0.41	+0.2
3,964,893	+		EFB2_03782	0.41	-1.5
3,964,894	-		EFB2_03782	0.41	-0.1
3,964,894	-		EFB2_03782	0.41	+1.1
3,964,894	-		EFB2_03782	0.41	+1.1
3,964,894	-		EFB2_03782	0.41	-0.1
3,964,894	-		EFB2_03782	0.41	-1.6
3,964,894	-		EFB2_03782	0.41	+0.2
3,964,894	-		EFB2_03782	0.41	-0.2
3,964,894	-		EFB2_03782	0.41	+1.6
3,964,952	+		EFB2_03782	0.53	-1.5
3,964,952	+		EFB2_03782	0.53	-0.3
3,964,952	+		EFB2_03782	0.53	-0.4
3,964,952	+		EFB2_03782	0.53	-1.2
3,964,953	-		EFB2_03782	0.54	+0.3
3,964,953	-		EFB2_03782	0.54	-0.7
3,964,953	-		EFB2_03782	0.54	+0.3
3,964,953	-		EFB2_03782	0.54	+2.3
3,964,953	-		EFB2_03782	0.54	-1.7
3,964,978	+		EFB2_03782	0.59	-1.9
3,964,978	+		EFB2_03782	0.59	+0.2
3,964,978	+		EFB2_03782	0.59	-2.1
3,964,978	+		EFB2_03782	0.59	-0.9
3,964,979	-		EFB2_03782	0.59	+0.5
3,964,988	+		EFB2_03782	0.61	+0.8
3,964,988	+		EFB2_03782	0.61	+1.1
3,965,069	+		EFB2_03782	0.79	-2.1
3,965,069	+		EFB2_03782	0.79	-2.2
3,965,070	-		EFB2_03782	0.79	-0.3
3,965,114	+		EFB2_03782	0.89	+0.0
3,965,115	-		EFB2_03782	0.89	-0.6
3,965,115	-		EFB2_03782	0.89	+0.9
3,965,115	-		EFB2_03782	0.89	-0.9
3,965,152	+				+0.2
3,965,152	+				+1.1
3,965,152	+				-0.1
3,965,153	-				-0.7
3,965,153	-				-0.2
3,965,153	-				-1.8
3,965,153	-				-1.2
3,965,186	+				+1.1
3,965,186	+				-0.4
3,965,186	+				+0.9
3,965,187	-				+1.3
3,965,187	-				-1.3
3,965,190	+				-1.7
3,965,190	+				+0.8
3,965,190	+				-0.5
3,965,190	+				-1.0
3,965,191	-				-2.2
3,965,191	-				-0.1
3,965,191	-				+0.7
3,965,191	-				-0.5
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