Strain Fitness in Escherichia fergusonii Becca around EFB2_03411

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,563,754	-		EFB2_03409	0.88	+2.0
3,563,754	-		EFB2_03409	0.88	-2.4
3,563,778	+				+0.7
3,563,778	+				-0.2
3,563,795	-				-0.5
3,563,812	+				+1.0
3,563,812	+				+0.5
3,563,812	+				+1.0
3,563,812	+				+1.6
3,563,812	+				-0.3
3,563,812	+				+2.2
3,563,812	+				-0.3
3,563,812	+				+0.5
3,563,812	+				+0.1
3,563,812	+				+0.3
3,563,812	+				-2.5
3,563,812	+				-2.5
3,563,812	+				+1.4
3,563,812	+				+0.2
3,563,812	+				-2.1
3,563,812	+				-1.3
3,563,812	+				+1.2
3,563,812	+				+0.1
3,563,812	+				-1.6
3,563,812	+				+1.3
3,563,812	+				+0.4
3,563,813	-				-1.2
3,563,813	-				+0.5
3,563,813	-				-2.5
3,563,813	-				+0.1
3,563,813	-				+0.5
3,563,813	-				-1.3
3,563,813	-				-2.9
3,563,813	-				-2.1
3,563,813	-				-0.3
3,563,813	-				+0.4
3,563,813	-				+1.5
3,563,813	-				+0.0
3,563,813	-				-0.9
3,563,813	-				-1.6
3,563,813	-				-2.3
3,563,813	-				+0.2
3,563,813	-				-1.3
3,563,867	+				+1.5
3,564,478	+				+1.1
3,564,478	+				-1.4
3,564,478	+				-1.4
3,564,490	+				+1.6
3,564,491	-				+0.5
3,564,501	-				+0.7
3,564,503	+				+0.3
3,564,503	+				+0.7
3,564,504	-				-1.6
3,564,504	-				+1.7
3,564,529	+				+1.7
3,564,554	+				+0.2
3,564,554	+				-0.3
3,564,554	+				-2.2
3,564,554	+				+0.5
3,564,554	+				+0.3
3,564,554	+				-0.2
3,564,554	+				+0.9
3,564,554	+				+1.1
3,564,554	+				-0.0
3,564,554	+				+0.2
3,564,554	+				+0.7
3,564,554	+				-0.7
3,564,554	+				-0.1
3,564,554	+				+0.1
3,564,555	-				-0.5
3,564,555	-				-3.0
3,564,555	-				-3.0
3,564,555	-				-1.3
3,564,560	+				+0.7
3,564,560	+				+0.4
3,564,560	+				-2.3
3,564,560	+				-0.8
3,564,561	-				+1.3
3,564,561	-				+1.5
3,564,561	-				-0.1
3,564,595	+				+0.1
3,564,595	+				-1.1
3,564,595	+				+1.9
3,564,595	+				+0.0
3,564,595	+				-1.0
3,564,595	+				+2.1
3,564,595	+				+0.8
3,564,595	+				-1.4
3,564,595	+				-0.3
3,564,595	+				-1.7
3,564,595	+				-0.3
3,564,595	+				-1.8
3,564,596	-				+0.5
3,564,596	-				-1.6
3,564,596	-				-0.7
3,564,596	-				-0.3
3,564,596	-				-1.9
3,564,596	-				+3.3
3,564,596	-				-1.5
3,564,601	+				+0.6
3,564,601	+				+0.7
3,564,602	-				+0.6
3,564,602	-				-0.0
3,564,602	-				+0.8
3,564,602	-				-1.9
3,564,619	+				-0.6
3,564,619	+				-0.2
3,564,620	-				+2.3
3,564,623	-				-0.9
3,564,628	+				+0.9
3,564,629	-				-0.3
3,564,629	-				-0.3
3,564,656	+				+2.8
3,564,656	+				+0.6
3,564,656	+				-1.3
3,564,656	+				+1.0
3,564,671	+				-1.3
3,564,671	+				-1.0
3,564,672	-				-0.5
3,564,679	+				+3.5
3,564,869	+		EFB2_03411	0.26	-1.5
3,564,871	+		EFB2_03411	0.26	-0.7
3,565,135	+		EFB2_03411	0.85	+0.3
3,565,198	+				+0.9
3,565,199	-				-2.0
3,565,272	+				-0.2
3,565,272	+				+1.9
3,565,272	+				+0.4
3,565,272	+				+0.8
3,565,272	+				-3.8
3,565,273	-				-0.0
3,565,273	-				-0.0
3,565,273	-				-1.0
3,565,273	-				+0.4
3,565,273	-				-2.2
3,565,273	-				+2.0
3,565,285	+				+1.5
3,565,286	-				-0.6
3,565,286	-				-3.1
3,565,286	-				-2.0
3,565,286	-				-0.9
3,565,286	-				+1.2
3,565,293	-				-0.1
3,565,293	-				-0.5
3,565,293	-				+3.2
3,565,295	+				-0.9
3,565,295	+				-2.9
3,565,296	-				-0.9
3,565,296	-				+1.5
3,565,370	+		EFB2_03412	0.26	+1.3
3,565,370	+		EFB2_03412	0.26	+0.4
3,565,370	+		EFB2_03412	0.26	+0.8
3,565,370	+		EFB2_03412	0.26	+0.1
3,565,370	+		EFB2_03412	0.26	+0.6
3,565,370	+		EFB2_03412	0.26	+1.5
3,565,370	+		EFB2_03412	0.26	-0.6
3,565,370	+		EFB2_03412	0.26	+1.9
3,565,370	+		EFB2_03412	0.26	+0.2
3,565,370	+		EFB2_03412	0.26	+1.9
3,565,370	+		EFB2_03412	0.26	+1.1
3,565,371	-		EFB2_03412	0.27	-0.3
3,565,371	-		EFB2_03412	0.27	+0.2
3,565,371	-		EFB2_03412	0.27	+1.0
3,565,371	-		EFB2_03412	0.27	+0.5
3,565,382	-		EFB2_03412	0.30	+0.5
3,565,449	+		EFB2_03412	0.50	+0.9
3,565,449	+		EFB2_03412	0.50	+1.0
3,565,502	+		EFB2_03412	0.67	+1.3
3,565,502	+		EFB2_03412	0.67	+2.0
3,565,503	-		EFB2_03412	0.67	+0.1
3,565,503	-		EFB2_03412	0.67	+0.4
3,565,503	-		EFB2_03412	0.67	+0.4
3,565,503	-		EFB2_03412	0.67	+0.9
3,565,513	+		EFB2_03412	0.70	-0.2
3,565,513	+		EFB2_03412	0.70	-2.7
3,565,513	+		EFB2_03412	0.70	-2.2
3,565,513	+		EFB2_03412	0.70	-1.3
3,565,513	+		EFB2_03412	0.70	+0.6
3,565,514	-		EFB2_03412	0.70	-1.1
3,565,514	-		EFB2_03412	0.70	-1.0
3,565,514	-		EFB2_03412	0.70	+0.8
3,565,514	-		EFB2_03412	0.70	+2.4
3,565,514	-		EFB2_03412	0.70	-0.3
3,565,514	-		EFB2_03412	0.70	+0.0
3,565,566	+		EFB2_03412	0.86	+0.8
3,565,566	+		EFB2_03412	0.86	-2.2
3,565,566	+		EFB2_03412	0.86	-0.5
3,565,566	+		EFB2_03412	0.86	+0.9
3,565,566	+		EFB2_03412	0.86	+0.8
3,565,567	-		EFB2_03412	0.87	+0.3
3,565,684	+				-0.8
3,565,689	+				+2.0
3,565,766	+				+0.4
3,565,766	+				-0.9
3,565,823	+		EFB2_03413	0.12	-1.8
3,565,823	+		EFB2_03413	0.12	+0.0
3,565,823	+		EFB2_03413	0.12	-0.1
3,565,823	+		EFB2_03413	0.12	+1.3
3,565,823	+		EFB2_03413	0.12	-1.4
3,565,824	-		EFB2_03413	0.12	+0.4
3,565,824	-		EFB2_03413	0.12	-0.7
3,565,824	-		EFB2_03413	0.12	+0.7
3,565,824	-		EFB2_03413	0.12	+0.3
3,565,824	-		EFB2_03413	0.12	+0.2
3,565,824	-		EFB2_03413	0.12	+2.3
3,565,824	-		EFB2_03413	0.12	-0.7
3,565,824	-		EFB2_03413	0.12	-0.4
3,565,841	+		EFB2_03413	0.13	-0.1
3,565,857	+		EFB2_03413	0.14	-0.6
3,565,857	+		EFB2_03413	0.14	-0.1
3,565,857	+		EFB2_03413	0.14	+2.6
3,565,857	+		EFB2_03413	0.14	+1.3
3,565,858	-		EFB2_03413	0.14	-0.3
3,565,858	-		EFB2_03413	0.14	+0.0
3,565,858	-		EFB2_03413	0.14	-2.6
3,565,858	-		EFB2_03413	0.14	+0.3
3,565,858	-		EFB2_03413	0.14	-2.3
3,565,858	-		EFB2_03413	0.14	+0.6
3,565,869	+		EFB2_03413	0.15	+1.2
3,565,874	+		EFB2_03413	0.15	+2.8
3,565,874	+		EFB2_03413	0.15	+1.2
3,565,874	+		EFB2_03413	0.15	+0.3
3,565,874	+		EFB2_03413	0.15	-2.1
3,565,875	-		EFB2_03413	0.15	-0.2
3,565,875	-		EFB2_03413	0.15	-2.1
3,565,875	-		EFB2_03413	0.15	+1.1
3,565,875	-		EFB2_03413	0.15	+0.7
3,565,875	-		EFB2_03413	0.15	-2.3
3,565,875	-		EFB2_03413	0.15	+1.0
3,565,875	-		EFB2_03413	0.15	+0.2
3,565,877	+		EFB2_03413	0.15	-0.4
3,565,877	+		EFB2_03413	0.15	-2.4
3,565,877	+		EFB2_03413	0.15	-3.1
3,565,877	+		EFB2_03413	0.15	+1.0
3,565,877	+		EFB2_03413	0.15	+0.3
3,565,878	-		EFB2_03413	0.15	+0.8
3,565,878	-		EFB2_03413	0.15	-0.7
3,565,878	-		EFB2_03413	0.15	+1.3
3,565,878	-		EFB2_03413	0.15	+0.7
3,565,878	-		EFB2_03413	0.15	+2.2
3,565,878	-		EFB2_03413	0.15	-0.4
3,565,878	-		EFB2_03413	0.15	-0.3
3,565,912	-		EFB2_03413	0.18	-1.0
3,565,925	+		EFB2_03413	0.19	+0.7
3,565,926	-		EFB2_03413	0.19	-2.8
3,565,926	-		EFB2_03413	0.19	+0.8
3,565,931	+		EFB2_03413	0.19	+1.3
3,565,931	+		EFB2_03413	0.19	+0.2
3,565,931	+		EFB2_03413	0.19	+1.3
3,565,932	-		EFB2_03413	0.19	+1.4
3,565,932	-		EFB2_03413	0.19	+2.1
3,565,932	-		EFB2_03413	0.19	-2.0
3,565,932	-		EFB2_03413	0.19	-0.4
3,565,979	+		EFB2_03413	0.23	+1.1
3,565,979	+		EFB2_03413	0.23	+0.1
3,565,979	+		EFB2_03413	0.23	-1.7
3,565,979	+		EFB2_03413	0.23	+0.3
3,565,979	+		EFB2_03413	0.23	-2.8
3,565,979	+		EFB2_03413	0.23	+0.7
3,565,979	+		EFB2_03413	0.23	-1.3
3,565,979	+		EFB2_03413	0.23	-0.3
3,565,979	+		EFB2_03413	0.23	-0.7
3,565,979	+		EFB2_03413	0.23	+1.9
3,565,979	+		EFB2_03413	0.23	+3.6
3,565,979	+		EFB2_03413	0.23	-0.0
3,565,979	+		EFB2_03413	0.23	+1.3
3,565,979	+		EFB2_03413	0.23	-1.0
3,565,979	+		EFB2_03413	0.23	+0.5
3,565,979	+		EFB2_03413	0.23	-0.7
3,565,979	+		EFB2_03413	0.23	-2.6
3,565,979	+		EFB2_03413	0.23	+1.0
3,565,979	+		EFB2_03413	0.23	-1.0
3,565,979	+		EFB2_03413	0.23	+0.5
3,565,979	+		EFB2_03413	0.23	+0.8
3,565,979	+		EFB2_03413	0.23	-0.7
3,565,979	+		EFB2_03413	0.23	+0.6
3,565,980	-		EFB2_03413	0.23	+1.1
3,565,980	-		EFB2_03413	0.23	+0.6
3,565,980	-		EFB2_03413	0.23	+0.7
3,565,980	-		EFB2_03413	0.23	-0.3
3,565,980	-		EFB2_03413	0.23	-0.8
3,565,980	-		EFB2_03413	0.23	-0.1
3,565,980	-		EFB2_03413	0.23	+0.9
3,565,980	-		EFB2_03413	0.23	-1.8
3,565,980	-		EFB2_03413	0.23	+0.4
3,565,980	-		EFB2_03413	0.23	+1.0
3,565,980	-		EFB2_03413	0.23	-0.5
3,565,980	-		EFB2_03413	0.23	+1.0
3,565,980	-		EFB2_03413	0.23	+1.3
3,565,980	-		EFB2_03413	0.23	-0.4
3,565,980	-		EFB2_03413	0.23	+1.7
3,565,980	-		EFB2_03413	0.23	+1.9
3,566,046	+		EFB2_03413	0.27	+0.6
3,566,072	+		EFB2_03413	0.29	+1.0
3,566,072	+		EFB2_03413	0.29	-1.6
3,566,072	+		EFB2_03413	0.29	+1.2
3,566,072	+		EFB2_03413	0.29	-0.5
3,566,072	+		EFB2_03413	0.29	-2.6
3,566,072	+		EFB2_03413	0.29	-0.6
3,566,073	-		EFB2_03413	0.29	+1.1
3,566,073	-		EFB2_03413	0.29	-3.9
3,566,073	-		EFB2_03413	0.29	+1.2
3,566,085	+		EFB2_03413	0.30	+0.4
3,566,085	+		EFB2_03413	0.30	-3.4
3,566,085	+		EFB2_03413	0.30	-2.4
3,566,085	+		EFB2_03413	0.30	-2.6
3,566,085	+		EFB2_03413	0.30	-1.5
3,566,085	+		EFB2_03413	0.30	+0.8
3,566,085	+		EFB2_03413	0.30	+0.3
3,566,085	+		EFB2_03413	0.30	-2.1
3,566,085	+		EFB2_03413	0.30	+0.9
3,566,085	+		EFB2_03413	0.30	+1.3
3,566,085	+		EFB2_03413	0.30	-0.8
3,566,086	-		EFB2_03413	0.30	-1.6
3,566,086	-		EFB2_03413	0.30	-1.1
3,566,086	-		EFB2_03413	0.30	-1.3
3,566,086	-		EFB2_03413	0.30	+0.8
3,566,086	-		EFB2_03413	0.30	-0.6
3,566,086	-		EFB2_03413	0.30	-2.1
3,566,086	-		EFB2_03413	0.30	+0.8
3,566,099	+		EFB2_03413	0.31	+0.6
3,566,099	+		EFB2_03413	0.31	+0.5
3,566,099	+		EFB2_03413	0.31	+1.5
3,566,100	-		EFB2_03413	0.31	-1.8
3,566,100	-		EFB2_03413	0.31	-1.5
3,566,100	-		EFB2_03413	0.31	+3.1
3,566,100	-		EFB2_03413	0.31	+0.2
3,566,100	-		EFB2_03413	0.31	+0.4
3,566,100	-		EFB2_03413	0.31	+0.2
3,566,100	-		EFB2_03413	0.31	-2.3
3,566,121	+		EFB2_03413	0.33	-2.1
3,566,122	-		EFB2_03413	0.33	-0.6
3,566,130	+		EFB2_03413	0.33	+0.9
3,566,130	+		EFB2_03413	0.33	+1.7
3,566,131	-		EFB2_03413	0.33	-2.5
3,566,131	-		EFB2_03413	0.33	+1.6
3,566,131	-		EFB2_03413	0.33	-1.4
3,566,131	-		EFB2_03413	0.33	-0.2
3,566,152	+		EFB2_03413	0.35	+1.2
3,566,152	+		EFB2_03413	0.35	-0.8
3,566,152	+		EFB2_03413	0.35	+0.9
3,566,152	+		EFB2_03413	0.35	-0.0
3,566,152	+		EFB2_03413	0.35	-1.6