Strain Fitness in Escherichia fergusonii Becca around EFB2_03339

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,495,049	+				+1.2
3,495,049	+				+1.3
3,495,049	+				+2.0
3,495,050	-				-1.3
3,495,050	-				+1.2
3,495,050	-				-0.5
3,495,163	-		EFB2_03338	0.14	-1.1
3,495,185	-		EFB2_03338	0.16	+0.6
3,495,392	-		EFB2_03338	0.38	+0.1
3,495,395	-		EFB2_03338	0.38	+1.7
3,495,424	+		EFB2_03338	0.41	+1.3
3,495,425	-		EFB2_03338	0.42	-0.0
3,495,425	-		EFB2_03338	0.42	-0.3
3,495,449	-		EFB2_03338	0.44	-1.3
3,495,468	+		EFB2_03338	0.46	+3.1
3,495,468	+		EFB2_03338	0.46	-1.8
3,495,469	-		EFB2_03338	0.46	+1.8
3,495,576	+		EFB2_03338	0.57	-1.6
3,495,576	+		EFB2_03338	0.57	+0.6
3,495,576	+		EFB2_03338	0.57	-0.0
3,495,576	+		EFB2_03338	0.57	-0.6
3,495,576	+		EFB2_03338	0.57	+0.2
3,495,576	+		EFB2_03338	0.57	+1.1
3,495,576	+		EFB2_03338	0.57	-0.2
3,495,576	+		EFB2_03338	0.57	-2.2
3,495,576	+		EFB2_03338	0.57	+0.9
3,495,577	-		EFB2_03338	0.57	-3.4
3,495,577	-		EFB2_03338	0.57	+0.3
3,495,577	-		EFB2_03338	0.57	-1.9
3,495,577	-		EFB2_03338	0.57	-0.8
3,495,577	-		EFB2_03338	0.57	+1.5
3,495,591	+		EFB2_03338	0.59	+0.9
3,495,591	+		EFB2_03338	0.59	-1.4
3,495,591	+		EFB2_03338	0.59	-2.9
3,495,591	+		EFB2_03338	0.59	+0.3
3,495,592	-		EFB2_03338	0.59	-2.1
3,495,600	-		EFB2_03338	0.60	+0.7
3,495,615	+		EFB2_03338	0.61	-0.7
3,495,645	+		EFB2_03338	0.65	-4.3
3,495,645	+		EFB2_03338	0.65	-0.3
3,495,645	+		EFB2_03338	0.65	-0.0
3,495,646	-		EFB2_03338	0.65	-1.1
3,495,646	-		EFB2_03338	0.65	+2.1
3,495,646	-		EFB2_03338	0.65	-0.8
3,495,689	+		EFB2_03338	0.69	+0.4
3,495,690	-		EFB2_03338	0.69	+1.1
3,495,717	+		EFB2_03338	0.72	+2.7
3,495,783	-		EFB2_03338	0.79	+0.4
3,495,783	-		EFB2_03338	0.79	+0.4
3,495,783	-		EFB2_03338	0.79	-1.4
3,495,794	-		EFB2_03338	0.80	-1.3
3,495,800	-		EFB2_03338	0.81	+0.6
3,495,821	-		EFB2_03338	0.83	+0.3
3,495,822	+		EFB2_03338	0.83	-0.3
3,495,822	+		EFB2_03338	0.83	+0.9
3,495,822	+		EFB2_03338	0.83	-1.2
3,495,822	+		EFB2_03338	0.83	+0.2
3,495,822	+		EFB2_03338	0.83	-0.8
3,495,822	+		EFB2_03338	0.83	+1.4
3,495,822	+		EFB2_03338	0.83	-1.6
3,495,822	+		EFB2_03338	0.83	+0.5
3,495,822	+		EFB2_03338	0.83	-0.2
3,495,822	+		EFB2_03338	0.83	+0.4
3,495,822	+		EFB2_03338	0.83	+0.7
3,495,823	-		EFB2_03338	0.83	+0.8
3,495,823	-		EFB2_03338	0.83	+1.4
3,495,823	-		EFB2_03338	0.83	-2.1
3,495,823	-		EFB2_03338	0.83	-0.3
3,495,823	-		EFB2_03338	0.83	-1.8
3,495,823	-		EFB2_03338	0.83	+1.5
3,495,823	-		EFB2_03338	0.83	-2.3
3,495,823	-		EFB2_03338	0.83	-0.3
3,495,823	-		EFB2_03338	0.83	-0.0
3,495,823	-		EFB2_03338	0.83	-0.3
3,495,823	-		EFB2_03338	0.83	+0.7
3,495,823	-		EFB2_03338	0.83	-2.3
3,495,823	-		EFB2_03338	0.83	-0.0
3,495,823	-		EFB2_03338	0.83	-0.9
3,495,823	-		EFB2_03338	0.83	+1.4
3,495,823	-		EFB2_03338	0.83	-0.0
3,495,823	-		EFB2_03338	0.83	-1.3
3,495,901	+				-1.0
3,495,901	+				-0.3
3,495,902	-				-1.3
3,495,966	+				+1.7
3,495,975	+				+0.8
3,495,975	+				-2.1
3,495,975	+				-1.0
3,495,975	+				-2.2
3,495,975	+				+1.7
3,495,975	+				-2.4
3,495,975	+				+1.3
3,495,975	+				+2.1
3,495,975	+				+0.4
3,495,975	+				-0.0
3,495,975	+				+0.7
3,495,975	+				+0.4
3,495,975	+				-2.9
3,495,975	+				-1.4
3,495,975	+				-3.9
3,495,975	+				-1.6
3,495,976	-				-1.4
3,495,976	-				+0.8
3,495,976	-				-1.4
3,495,980	+				+0.5
3,495,980	+				+0.3
3,495,980	+				-0.3
3,495,981	-				-1.3
3,495,981	-				-1.9
3,495,983	+				+0.3
3,495,983	+				-3.7
3,495,983	+				-1.1
3,495,983	+				+0.2
3,495,983	+				-0.7
3,495,983	+				+0.9
3,495,983	+				+0.4
3,495,983	+				+3.3
3,495,983	+				-1.1
3,495,983	+				-0.2
3,495,983	+				-1.7
3,495,983	+				-0.1
3,495,983	+				+1.3
3,495,984	-				-0.5
3,495,984	-				-0.1
3,495,984	-				-0.5
3,495,984	-				-0.3
3,495,984	-				+0.6
3,495,984	-				-1.9
3,495,984	-				+0.6
3,495,984	-				+1.8
3,495,984	-				+1.3
3,495,984	-				-2.7
3,495,984	-				-2.2
3,495,984	-				-0.0
3,495,984	-				+0.5
3,495,984	-				+0.9
3,496,025	-				+0.8
3,496,069	+				-1.3
3,496,069	+				-0.6
3,496,070	-				-1.9
3,496,114	+				-1.1
3,496,115	-				+0.7
3,496,117	-				-0.3
3,496,156	+		EFB2_03339	0.13	-1.2
3,496,156	+		EFB2_03339	0.13	-1.0
3,496,156	+		EFB2_03339	0.13	+0.4
3,496,156	+		EFB2_03339	0.13	+1.6
3,496,157	-		EFB2_03339	0.13	-2.6
3,496,157	-		EFB2_03339	0.13	-2.0
3,496,157	-		EFB2_03339	0.13	-0.8
3,496,157	-		EFB2_03339	0.13	-0.7
3,496,220	+		EFB2_03339	0.20	-0.7
3,496,221	-		EFB2_03339	0.20	-0.6
3,496,288	+		EFB2_03339	0.27	-1.0
3,496,288	+		EFB2_03339	0.27	-1.7
3,496,289	-		EFB2_03339	0.27	-2.2
3,496,290	+		EFB2_03339	0.27	-0.5
3,496,290	+		EFB2_03339	0.27	-1.1
3,496,290	+		EFB2_03339	0.27	+1.3
3,496,291	-		EFB2_03339	0.27	-1.6
3,496,291	-		EFB2_03339	0.27	+2.7
3,496,314	-		EFB2_03339	0.29	-0.0
3,496,319	+		EFB2_03339	0.30	+0.7
3,496,320	-		EFB2_03339	0.30	-0.5
3,496,320	-		EFB2_03339	0.30	+0.7
3,496,361	+		EFB2_03339	0.34	-2.5
3,496,361	+		EFB2_03339	0.34	-0.7
3,496,361	+		EFB2_03339	0.34	-0.0
3,496,361	+		EFB2_03339	0.34	-2.1
3,496,362	-		EFB2_03339	0.34	-3.8
3,496,413	+		EFB2_03339	0.39	-1.1
3,496,413	+		EFB2_03339	0.39	-1.8
3,496,413	+		EFB2_03339	0.39	-1.8
3,496,414	-		EFB2_03339	0.39	+1.1
3,496,432	-		EFB2_03339	0.41	-1.8
3,496,448	-		EFB2_03339	0.43	+0.0
3,496,473	+		EFB2_03339	0.45	-1.8
3,496,474	-		EFB2_03339	0.45	-1.7
3,496,478	+		EFB2_03339	0.46	-0.8
3,496,479	-		EFB2_03339	0.46	+2.3
3,496,479	-		EFB2_03339	0.46	+0.2
3,496,557	-		EFB2_03339	0.54	+1.0
3,496,581	+		EFB2_03339	0.56	-0.6
3,496,582	-		EFB2_03339	0.56	-0.7
3,496,601	+		EFB2_03339	0.58	+1.2
3,496,601	+		EFB2_03339	0.58	-2.3
3,496,601	+		EFB2_03339	0.58	-2.6
3,496,601	+		EFB2_03339	0.58	+3.1
3,496,601	+		EFB2_03339	0.58	+0.7
3,496,601	+		EFB2_03339	0.58	+1.5
3,496,601	+		EFB2_03339	0.58	+0.3
3,496,601	+		EFB2_03339	0.58	-1.6
3,496,601	+		EFB2_03339	0.58	-2.5
3,496,601	+		EFB2_03339	0.58	-0.7
3,496,601	+		EFB2_03339	0.58	+1.3
3,496,601	+		EFB2_03339	0.58	+0.6
3,496,601	+		EFB2_03339	0.58	-1.1
3,496,601	+		EFB2_03339	0.58	-2.3
3,496,601	+		EFB2_03339	0.58	-1.8
3,496,601	+		EFB2_03339	0.58	-1.1
3,496,601	+		EFB2_03339	0.58	-2.1
3,496,601	+		EFB2_03339	0.58	-0.5
3,496,602	-		EFB2_03339	0.58	-1.0
3,496,602	-		EFB2_03339	0.58	-0.4
3,496,602	-		EFB2_03339	0.58	-2.5
3,496,602	-		EFB2_03339	0.58	+0.3
3,496,602	-		EFB2_03339	0.58	-1.6
3,496,602	-		EFB2_03339	0.58	-1.1
3,496,602	-		EFB2_03339	0.58	-3.3
3,496,602	-		EFB2_03339	0.58	+0.4
3,496,602	-		EFB2_03339	0.58	-1.7
3,496,602	-		EFB2_03339	0.58	-1.1
3,496,602	-		EFB2_03339	0.58	+0.1
3,496,602	-		EFB2_03339	0.58	+2.3
3,496,602	-		EFB2_03339	0.58	-1.1
3,496,602	-		EFB2_03339	0.58	-0.4
3,496,602	-		EFB2_03339	0.58	+1.0
3,496,602	-		EFB2_03339	0.58	+0.2
3,496,619	+		EFB2_03339	0.60	+0.7
3,496,619	+		EFB2_03339	0.60	-0.7
3,496,620	-		EFB2_03339	0.60	-0.7
3,496,620	-		EFB2_03339	0.60	-0.6
3,496,620	-		EFB2_03339	0.60	+1.3
3,496,695	+		EFB2_03339	0.67	+0.7
3,496,715	+		EFB2_03339	0.69	-0.6
3,496,715	+		EFB2_03339	0.69	-3.0
3,496,715	+		EFB2_03339	0.69	+0.5
3,496,715	+		EFB2_03339	0.69	-1.4
3,496,715	+		EFB2_03339	0.69	-2.6
3,496,715	+		EFB2_03339	0.69	-1.3
3,496,715	+		EFB2_03339	0.69	-0.5
3,496,715	+		EFB2_03339	0.69	+1.0
3,496,715	+		EFB2_03339	0.69	+0.8
3,496,716	-		EFB2_03339	0.70	+0.9
3,496,716	-		EFB2_03339	0.70	-0.0
3,496,716	-		EFB2_03339	0.70	-3.0
3,496,716	-		EFB2_03339	0.70	-2.8
3,496,716	-		EFB2_03339	0.70	-2.6
3,496,716	-		EFB2_03339	0.70	+0.7
3,496,716	-		EFB2_03339	0.70	-1.7
3,496,716	-		EFB2_03339	0.70	-2.4
3,496,717	+		EFB2_03339	0.70	+3.5
3,496,717	+		EFB2_03339	0.70	-0.5
3,496,717	+		EFB2_03339	0.70	-0.6
3,496,717	+		EFB2_03339	0.70	+0.4
3,496,717	+		EFB2_03339	0.70	-1.5
3,496,717	+		EFB2_03339	0.70	-0.3
3,496,717	+		EFB2_03339	0.70	-1.3
3,496,717	+		EFB2_03339	0.70	-0.6
3,496,717	+		EFB2_03339	0.70	+0.4
3,496,718	-		EFB2_03339	0.70	-1.6
3,496,718	-		EFB2_03339	0.70	-2.1
3,496,718	-		EFB2_03339	0.70	-1.0
3,496,718	-		EFB2_03339	0.70	-3.5
3,496,718	-		EFB2_03339	0.70	-2.6
3,496,718	-		EFB2_03339	0.70	-1.3
3,496,718	-		EFB2_03339	0.70	-1.0
3,496,718	-		EFB2_03339	0.70	-1.1
3,496,718	-		EFB2_03339	0.70	-0.6
3,496,718	-		EFB2_03339	0.70	+0.9
3,496,760	+		EFB2_03339	0.74	+0.1
3,496,760	+		EFB2_03339	0.74	-1.8
3,496,760	+		EFB2_03339	0.74	-2.1
3,496,760	+		EFB2_03339	0.74	+3.9
3,496,761	-		EFB2_03339	0.74	-1.3
3,496,761	-		EFB2_03339	0.74	-1.4
3,496,761	-		EFB2_03339	0.74	-1.0
3,496,761	-		EFB2_03339	0.74	+1.3
3,496,761	-		EFB2_03339	0.74	-2.2
3,496,761	-		EFB2_03339	0.74	-2.3
3,496,761	-		EFB2_03339	0.74	-1.9
3,496,761	-		EFB2_03339	0.74	+0.6
3,496,826	+		EFB2_03339	0.81	+1.6
3,496,826	+		EFB2_03339	0.81	-0.5
3,496,827	-		EFB2_03339	0.81	-2.4
3,496,827	-		EFB2_03339	0.81	-1.3
3,496,827	-		EFB2_03339	0.81	+1.6
3,496,827	-		EFB2_03339	0.81	+0.4
3,496,827	-		EFB2_03339	0.81	-2.1
3,496,827	-		EFB2_03339	0.81	+1.9
3,496,831	+		EFB2_03339	0.81	+0.3
3,496,832	-		EFB2_03339	0.81	-3.2
3,496,867	+		EFB2_03339	0.85	+0.2
3,496,867	+		EFB2_03339	0.85	-2.1
3,496,867	+		EFB2_03339	0.85	-0.8
3,496,867	+		EFB2_03339	0.85	-0.5
3,496,867	+		EFB2_03339	0.85	+0.9
3,496,867	+		EFB2_03339	0.85	+1.8
3,496,867	+		EFB2_03339	0.85	-1.5
3,496,867	+		EFB2_03339	0.85	-1.0
3,496,867	+		EFB2_03339	0.85	-2.1
3,496,867	+		EFB2_03339	0.85	+1.0
3,496,868	-		EFB2_03339	0.85	-1.0
3,496,868	-		EFB2_03339	0.85	+0.7
3,496,868	-		EFB2_03339	0.85	-0.8
3,496,873	+		EFB2_03339	0.85	+2.5
3,496,873	+		EFB2_03339	0.85	+0.4
3,496,873	+		EFB2_03339	0.85	+0.7
3,496,873	+		EFB2_03339	0.85	-0.0
3,496,873	+		EFB2_03339	0.85	-3.6
3,496,874	-		EFB2_03339	0.85	-2.5
3,496,926	+				-1.8
3,496,927	-				-0.7
3,496,927	-				-2.5
3,497,000	+				-0.8
3,497,002	+				-2.1
3,497,002	+				-0.3
3,497,002	+				-1.7
3,497,002	+				-0.0
3,497,003	-				-0.7
3,497,036	+				+1.2
3,497,036	+				-0.5
3,497,036	+				-1.9
3,497,036	+				+0.9
3,497,037	-				-0.5
3,497,037	-				-0.1
3,497,037	-				-0.9
3,497,049	+				+0.2
3,497,050	-				+0.2
3,497,056	+				+0.7
3,497,057	-				-2.0
3,497,057	-				+0.7
3,497,057	-				+1.0
3,497,090	+				+1.5
3,497,090	+				-0.7
3,497,113	-				-1.0
3,497,126	+				+1.6
3,497,126	+				-0.1
3,497,126	+				-0.8
3,497,127	-				+1.4
3,497,127	-				+1.9
3,497,127	-				+1.1
3,497,127	-				+1.7
3,497,157	+				-0.9
3,497,157	+				-0.8
3,497,157	+				+1.7
3,497,157	+				+0.4
3,497,157	+				-3.1
3,497,158	-				+0.3
3,497,158	-				-0.9
3,497,158	-				-1.9
3,497,158	-				-1.0
3,497,158	-				-2.9
3,497,158	-				-2.9
3,497,167	+				+2.4
3,497,167	+				+0.6
3,497,167	+				-3.4
3,497,167	+				-0.1
3,497,168	-				+1.3
3,497,168	-				+0.6
3,497,168	-				+0.8
3,497,168	-				+1.6
3,497,201	+				-2.7
3,497,201	+				-1.0
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