Strain Fitness in Escherichia fergusonii Becca around EFB2_03310

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,463,611	-				-2.4
3,463,611	-				+3.0
3,463,666	-				+0.7
3,463,688	+				+0.1
3,463,688	+				+0.2
3,463,688	+				+2.3
3,463,688	+				-0.2
3,463,688	+				+0.9
3,463,688	+				+1.6
3,463,688	+				+0.6
3,463,688	+				-0.3
3,463,688	+				+1.1
3,463,688	+				+0.8
3,463,688	+				-2.8
3,463,688	+				-3.1
3,463,688	+				-3.4
3,463,688	+				+0.6
3,463,688	+				+0.9
3,463,688	+				+0.5
3,463,688	+				+0.4
3,463,688	+				-2.3
3,463,688	+				+1.0
3,463,688	+				+1.6
3,463,688	+				+0.3
3,463,689	-				-0.5
3,463,689	-				+0.3
3,463,689	-				+1.0
3,463,689	-				-2.0
3,463,689	-				+0.6
3,463,689	-				+3.3
3,463,689	-				-0.7
3,463,689	-				-0.3
3,463,689	-				+1.6
3,463,689	-				-1.2
3,463,689	-				+1.0
3,463,689	-				-0.5
3,463,689	-				-0.3
3,463,689	-				+2.0
3,463,689	-				-1.1
3,463,689	-				+1.8
3,463,689	-				-1.1
3,463,689	-				+1.9
3,463,692	+				+1.6
3,463,692	+				+0.5
3,463,692	+				+0.9
3,463,692	+				+1.1
3,463,692	+				-0.8
3,463,692	+				-1.9
3,463,692	+				-0.4
3,463,693	-				+0.5
3,463,693	-				-2.1
3,463,693	-				+0.2
3,463,693	-				-0.0
3,463,693	-				-1.1
3,463,693	-				+0.9
3,463,693	-				+1.1
3,463,722	+				-3.5
3,463,722	+				+0.3
3,463,723	-				-1.1
3,463,723	-				-3.3
3,463,723	-				-1.5
3,463,723	-				-0.7
3,463,737	+				+1.4
3,463,737	+				-1.7
3,463,737	+				-1.9
3,463,738	-				-0.9
3,463,738	-				-2.3
3,463,738	-				-0.9
3,463,738	-				-0.6
3,463,738	-				+0.2
3,463,787	+				-0.1
3,463,788	-				-3.0
3,463,812	-				+0.3
3,463,812	-				-1.5
3,463,817	-				-1.6
3,463,833	+				+0.2
3,463,833	+				+0.0
3,463,833	+				+1.2
3,463,833	+				+0.1
3,463,834	-				+0.6
3,463,834	-				-3.1
3,463,834	-				+0.6
3,463,846	+				-2.7
3,463,846	+				+1.8
3,463,846	+				-3.2
3,463,847	-				+1.5
3,463,878	+				-1.3
3,463,884	+				+0.0
3,463,885	-				+1.0
3,463,885	-				+1.4
3,463,901	-				+0.1
3,463,923	-				+1.2
3,463,923	-				-2.3
3,463,923	-				-1.3
3,463,998	+		EFB2_03309	0.12	+0.3
3,464,027	-		EFB2_03309	0.16	-0.2
3,464,049	-		EFB2_03309	0.20	+0.4
3,464,064	+		EFB2_03309	0.22	-0.6
3,464,064	+		EFB2_03309	0.22	-0.2
3,464,064	+		EFB2_03309	0.22	-1.1
3,464,064	+		EFB2_03309	0.22	+1.0
3,464,064	+		EFB2_03309	0.22	+0.1
3,464,064	+		EFB2_03309	0.22	+1.2
3,464,064	+		EFB2_03309	0.22	+2.0
3,464,065	-		EFB2_03309	0.22	+1.1
3,464,065	-		EFB2_03309	0.22	-1.3
3,464,067	+		EFB2_03309	0.22	-0.3
3,464,067	+		EFB2_03309	0.22	+1.7
3,464,067	+		EFB2_03309	0.22	+1.7
3,464,067	+		EFB2_03309	0.22	+1.0
3,464,067	+		EFB2_03309	0.22	+0.4
3,464,067	+		EFB2_03309	0.22	+0.8
3,464,067	+		EFB2_03309	0.22	+0.1
3,464,067	+		EFB2_03309	0.22	+0.7
3,464,068	-		EFB2_03309	0.22	+0.9
3,464,068	-		EFB2_03309	0.22	-0.6
3,464,068	-		EFB2_03309	0.22	-1.0
3,464,068	-		EFB2_03309	0.22	-1.2
3,464,068	-		EFB2_03309	0.22	+2.9
3,464,068	-		EFB2_03309	0.22	-1.1
3,464,068	-		EFB2_03309	0.22	+0.5
3,464,068	-		EFB2_03309	0.22	-0.0
3,464,068	-		EFB2_03309	0.22	+0.6
3,464,068	-		EFB2_03309	0.22	-1.1
3,464,068	-		EFB2_03309	0.22	-1.6
3,464,068	-		EFB2_03309	0.22	-0.7
3,464,068	-		EFB2_03309	0.22	+3.6
3,464,068	-		EFB2_03309	0.22	+0.3
3,464,068	-		EFB2_03309	0.22	+0.6
3,464,068	-		EFB2_03309	0.22	+0.6
3,464,091	+		EFB2_03309	0.26	+1.2
3,464,091	+		EFB2_03309	0.26	+0.5
3,464,091	+		EFB2_03309	0.26	+2.2
3,464,092	-		EFB2_03309	0.26	+0.7
3,464,092	-		EFB2_03309	0.26	+0.4
3,464,092	-		EFB2_03309	0.26	-2.8
3,464,123	+		EFB2_03309	0.31	+0.8
3,464,124	-		EFB2_03309	0.31	+2.5
3,464,237	+		EFB2_03309	0.48	+0.6
3,464,237	+		EFB2_03309	0.48	-0.7
3,464,237	+		EFB2_03309	0.48	-0.4
3,464,237	+		EFB2_03309	0.48	-0.1
3,464,237	+		EFB2_03309	0.48	-0.1
3,464,238	-		EFB2_03309	0.48	+0.7
3,464,238	-		EFB2_03309	0.48	-1.3
3,464,238	-		EFB2_03309	0.48	-0.7
3,464,238	-		EFB2_03309	0.48	+0.8
3,464,238	-		EFB2_03309	0.48	-1.7
3,464,279	+		EFB2_03309	0.54	-2.9
3,464,279	+		EFB2_03309	0.54	+0.5
3,464,280	-		EFB2_03309	0.54	+0.2
3,464,314	-		EFB2_03309	0.59	-0.2
3,464,314	-		EFB2_03309	0.59	+1.3
3,464,314	-		EFB2_03309	0.59	+1.3
3,464,339	+		EFB2_03309	0.63	-0.5
3,464,339	+		EFB2_03309	0.63	+0.9
3,464,339	+		EFB2_03309	0.63	-2.5
3,464,340	-		EFB2_03309	0.63	+0.8
3,464,340	-		EFB2_03309	0.63	-1.2
3,464,340	-		EFB2_03309	0.63	+0.7
3,464,340	-		EFB2_03309	0.63	+0.2
3,464,340	-		EFB2_03309	0.63	-0.0
3,464,347	+		EFB2_03309	0.64	-0.9
3,464,348	-		EFB2_03309	0.64	+1.1
3,464,348	-		EFB2_03309	0.64	+0.1
3,464,348	-		EFB2_03309	0.64	-1.0
3,464,360	+		EFB2_03309	0.66	+0.4
3,464,360	+		EFB2_03309	0.66	+0.5
3,464,360	+		EFB2_03309	0.66	+1.4
3,464,361	-		EFB2_03309	0.66	+2.1
3,464,361	-		EFB2_03309	0.66	-1.1
3,464,361	-		EFB2_03309	0.66	-0.5
3,464,361	-		EFB2_03309	0.66	+0.3
3,464,361	-		EFB2_03309	0.66	+0.2
3,464,361	-		EFB2_03309	0.66	-1.4
3,464,361	-		EFB2_03309	0.66	-0.7
3,464,420	+		EFB2_03309	0.75	+0.2
3,464,420	+		EFB2_03309	0.75	-1.3
3,464,420	+		EFB2_03309	0.75	+0.0
3,464,421	-		EFB2_03309	0.75	-3.0
3,464,471	+		EFB2_03309	0.82	+0.3
3,464,471	+		EFB2_03309	0.82	+0.2
3,464,471	+		EFB2_03309	0.82	-0.7
3,464,471	+		EFB2_03309	0.82	+0.6
3,464,471	+		EFB2_03309	0.82	+0.1
3,464,472	-		EFB2_03309	0.83	-1.8
3,464,472	-		EFB2_03309	0.83	+1.4
3,464,472	-		EFB2_03309	0.83	-1.9
3,464,472	-		EFB2_03309	0.83	+1.4
3,464,472	-		EFB2_03309	0.83	+0.4
3,464,479	+		EFB2_03309	0.84	-0.3
3,464,479	+		EFB2_03309	0.84	-0.3
3,464,479	+		EFB2_03309	0.84	-1.2
3,464,479	+		EFB2_03309	0.84	-1.2
3,464,480	-		EFB2_03309	0.84	-0.5
3,464,480	-		EFB2_03309	0.84	-0.7
3,464,480	-		EFB2_03309	0.84	-0.3
3,464,480	-		EFB2_03309	0.84	-0.7
3,464,480	-		EFB2_03309	0.84	-0.7
3,464,483	+		EFB2_03309	0.84	-3.0
3,464,546	+				+1.9
3,464,546	+				-1.1
3,464,547	-				-0.6
3,464,586	+				+1.0
3,464,586	+				-3.3
3,464,587	-				+0.5
3,464,587	-				+1.6
3,464,620	+				-0.0
3,464,622	+				-0.1
3,464,622	+				+1.3
3,464,623	-				+1.4
3,464,623	-				-1.3
3,464,625	+				-0.2
3,464,625	+				-0.4
3,464,625	+				-0.2
3,464,625	+				+0.5
3,464,625	+				+1.3
3,464,626	-				-1.8
3,464,626	-				-1.6
3,464,626	-				+0.5
3,464,626	-				+1.1
3,464,628	+				-1.2
3,464,628	+				-1.0
3,464,628	+				+0.7
3,464,628	+				-2.6
3,464,628	+				+0.3
3,464,628	+				-0.4
3,464,628	+				+2.0
3,464,628	+				+1.0
3,464,628	+				-1.7
3,464,629	-				-2.2
3,464,629	-				+1.1
3,464,629	-				-3.0
3,464,629	-				-2.9
3,464,629	-				+0.9
3,464,629	-				-1.9
3,464,654	+				+1.1
3,464,696	+		EFB2_03310	0.11	+1.0
3,464,696	+		EFB2_03310	0.11	+0.1
3,464,697	-		EFB2_03310	0.11	-0.7
3,464,697	-		EFB2_03310	0.11	-0.2
3,464,717	-		EFB2_03310	0.13	+0.5
3,464,728	+		EFB2_03310	0.14	-0.2
3,464,728	+		EFB2_03310	0.14	-0.1
3,464,729	-		EFB2_03310	0.14	+1.6
3,464,729	-		EFB2_03310	0.14	-1.6
3,464,729	-		EFB2_03310	0.14	+1.0
3,464,729	-		EFB2_03310	0.14	+0.7
3,464,729	-		EFB2_03310	0.14	-0.1
3,464,729	-		EFB2_03310	0.14	+0.0
3,464,825	+		EFB2_03310	0.23	-1.1
3,464,826	-		EFB2_03310	0.24	+1.4
3,464,826	-		EFB2_03310	0.24	+1.5
3,464,879	+		EFB2_03310	0.29	+1.2
3,464,879	+		EFB2_03310	0.29	+0.9
3,464,879	+		EFB2_03310	0.29	-3.3
3,464,879	+		EFB2_03310	0.29	-0.5
3,464,879	+		EFB2_03310	0.29	+0.9
3,464,879	+		EFB2_03310	0.29	+1.0
3,464,879	+		EFB2_03310	0.29	+0.7
3,464,880	-		EFB2_03310	0.29	+0.6
3,464,880	-		EFB2_03310	0.29	+1.7
3,464,957	+		EFB2_03310	0.37	-0.6
3,464,957	+		EFB2_03310	0.37	+1.0
3,464,957	+		EFB2_03310	0.37	+0.9
3,464,957	+		EFB2_03310	0.37	+1.0
3,464,957	+		EFB2_03310	0.37	-0.5
3,464,958	-		EFB2_03310	0.37	+1.4
3,464,958	-		EFB2_03310	0.37	+1.0
3,464,963	+		EFB2_03310	0.37	+0.7
3,464,963	+		EFB2_03310	0.37	+2.4
3,464,963	+		EFB2_03310	0.37	-0.0
3,464,963	+		EFB2_03310	0.37	+2.3
3,464,963	+		EFB2_03310	0.37	+0.1
3,464,964	-		EFB2_03310	0.37	+0.7
3,464,964	-		EFB2_03310	0.37	+0.8
3,464,964	-		EFB2_03310	0.37	+1.0
3,464,964	-		EFB2_03310	0.37	-0.7
3,464,978	+		EFB2_03310	0.39	-0.4
3,464,978	+		EFB2_03310	0.39	-1.3
3,464,978	+		EFB2_03310	0.39	+1.9
3,464,978	+		EFB2_03310	0.39	+1.2
3,464,978	+		EFB2_03310	0.39	+0.1
3,464,978	+		EFB2_03310	0.39	-0.3
3,464,978	+		EFB2_03310	0.39	+2.3
3,464,978	+		EFB2_03310	0.39	-2.0
3,464,978	+		EFB2_03310	0.39	+1.9
3,464,979	-		EFB2_03310	0.39	+1.8
3,464,979	-		EFB2_03310	0.39	-1.3
3,464,979	-		EFB2_03310	0.39	-1.5
3,464,979	-		EFB2_03310	0.39	-0.7
3,464,979	-		EFB2_03310	0.39	+1.0
3,464,979	-		EFB2_03310	0.39	-2.9
3,464,979	-		EFB2_03310	0.39	-2.2
3,465,088	+		EFB2_03310	0.50	+0.2
3,465,088	+		EFB2_03310	0.50	+0.5
3,465,089	-		EFB2_03310	0.50	-1.2
3,465,089	-		EFB2_03310	0.50	-1.9
3,465,089	-		EFB2_03310	0.50	+1.6
3,465,101	+		EFB2_03310	0.51	-1.3
3,465,246	+		EFB2_03310	0.66	+1.0
3,465,265	+		EFB2_03310	0.68	-2.0
3,465,265	+		EFB2_03310	0.68	-1.2
3,465,265	+		EFB2_03310	0.68	-0.3
3,465,265	+		EFB2_03310	0.68	-0.6
3,465,265	+		EFB2_03310	0.68	+1.1
3,465,265	+		EFB2_03310	0.68	+0.6
3,465,266	-		EFB2_03310	0.68	+1.9
3,465,266	-		EFB2_03310	0.68	-0.3
3,465,266	-		EFB2_03310	0.68	-2.1
3,465,282	+		EFB2_03310	0.69	+0.4
3,465,283	-		EFB2_03310	0.69	-2.2
3,465,283	-		EFB2_03310	0.69	+0.1
3,465,286	+		EFB2_03310	0.70	+1.8
3,465,286	+		EFB2_03310	0.70	+1.5
3,465,287	-		EFB2_03310	0.70	+0.2
3,465,287	-		EFB2_03310	0.70	+0.5
3,465,323	+		EFB2_03310	0.73	-2.3
3,465,323	+		EFB2_03310	0.73	+1.5
3,465,323	+		EFB2_03310	0.73	+1.8
3,465,324	-		EFB2_03310	0.74	+0.3
3,465,324	-		EFB2_03310	0.74	+0.3
3,465,324	-		EFB2_03310	0.74	-1.5
3,465,337	+		EFB2_03310	0.75	+0.4
3,465,337	+		EFB2_03310	0.75	+2.4
3,465,337	+		EFB2_03310	0.75	-0.6
3,465,338	-		EFB2_03310	0.75	-1.8
3,465,338	-		EFB2_03310	0.75	-1.4
3,465,338	-		EFB2_03310	0.75	-0.2
3,465,377	+		EFB2_03310	0.79	+0.7
3,465,377	+		EFB2_03310	0.79	+0.3
3,465,377	+		EFB2_03310	0.79	+1.3
3,465,377	+		EFB2_03310	0.79	-1.1
3,465,377	+		EFB2_03310	0.79	-0.9
3,465,377	+		EFB2_03310	0.79	-1.0
3,465,377	+		EFB2_03310	0.79	-2.5
3,465,377	+		EFB2_03310	0.79	-1.3
3,465,377	+		EFB2_03310	0.79	-3.1
3,465,378	-		EFB2_03310	0.79	+0.4
3,465,378	-		EFB2_03310	0.79	-0.5
3,465,378	-		EFB2_03310	0.79	-2.8
3,465,378	-		EFB2_03310	0.79	+0.4
3,465,378	-		EFB2_03310	0.79	+0.0
3,465,378	-		EFB2_03310	0.79	+1.8
3,465,378	-		EFB2_03310	0.79	-3.2
3,465,379	+		EFB2_03310	0.79	+2.1
3,465,446	-		EFB2_03310	0.86	+0.5
3,465,502	+				+2.1
3,465,502	+				+0.7
3,465,502	+				+1.7
3,465,502	+				+1.1
3,465,502	+				-0.9
3,465,502	+				-0.1
3,465,503	-				+0.3
3,465,503	-				-0.0
3,465,503	-				-3.2
3,465,678	+				-3.0
3,465,679	-				-1.1
3,465,745	+				-2.3
3,465,746	-				-3.1
3,465,746	-				+0.3
3,465,828	+		EFB2_03311	0.14	+1.1
3,465,828	+		EFB2_03311	0.14	-2.8
3,465,828	+		EFB2_03311	0.14	-0.6
3,465,828	+		EFB2_03311	0.14	-0.1
3,465,828	+		EFB2_03311	0.14	-0.0
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