Strain Fitness in Escherichia fergusonii Becca around EFB2_02518

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,647,271	+				-2.2
2,647,271	+				-0.3
2,647,271	+				+0.3
2,647,271	+				+0.1
2,647,272	-				-0.9
2,647,272	-				+4.2
2,647,274	-				+1.3
2,647,428	+				+1.0
2,647,428	+				-0.6
2,647,428	+				+3.0
2,647,428	+				+0.3
2,647,429	-				+1.0
2,647,429	-				+2.6
2,647,429	-				+1.3
2,647,429	-				-1.0
2,647,451	+				-1.0
2,647,451	+				+1.3
2,647,471	-				+0.5
2,647,487	+				+2.0
2,647,487	+				+0.5
2,647,487	+				+2.1
2,647,487	+				-0.7
2,647,487	+				+2.6
2,647,487	+				+0.0
2,647,488	-				+1.2
2,647,488	-				-1.9
2,647,488	-				-1.2
2,647,488	-				-1.3
2,647,488	-				+1.0
2,647,488	-				-0.4
2,647,488	-				+0.5
2,647,488	-				-0.1
2,647,488	-				+2.2
2,647,489	+				+0.3
2,647,489	+				+0.4
2,647,490	-				+0.3
2,647,490	-				-0.1
2,647,599	+		EFB2_02517	0.17	-1.0
2,647,626	+		EFB2_02517	0.21	+1.4
2,647,627	-		EFB2_02517	0.22	+1.1
2,647,627	-		EFB2_02517	0.22	-1.8
2,647,627	-		EFB2_02517	0.22	-2.7
2,647,627	-		EFB2_02517	0.22	-0.6
2,647,627	-		EFB2_02517	0.22	-0.9
2,647,628	+		EFB2_02517	0.22	-1.2
2,647,628	+		EFB2_02517	0.22	-0.0
2,647,628	+		EFB2_02517	0.22	+1.0
2,647,628	+		EFB2_02517	0.22	-0.9
2,647,628	+		EFB2_02517	0.22	-1.8
2,647,628	+		EFB2_02517	0.22	+1.9
2,647,628	+		EFB2_02517	0.22	-1.1
2,647,628	+		EFB2_02517	0.22	+3.1
2,647,628	+		EFB2_02517	0.22	-0.2
2,647,628	+		EFB2_02517	0.22	-0.0
2,647,628	+		EFB2_02517	0.22	+0.3
2,647,628	+		EFB2_02517	0.22	-1.4
2,647,628	+		EFB2_02517	0.22	+1.0
2,647,628	+		EFB2_02517	0.22	+1.0
2,647,628	+		EFB2_02517	0.22	+0.0
2,647,628	+		EFB2_02517	0.22	+1.9
2,647,628	+		EFB2_02517	0.22	-0.6
2,647,628	+		EFB2_02517	0.22	-0.2
2,647,628	+		EFB2_02517	0.22	+1.6
2,647,628	+		EFB2_02517	0.22	-0.2
2,647,628	+		EFB2_02517	0.22	+2.0
2,647,628	+		EFB2_02517	0.22	+0.8
2,647,628	+		EFB2_02517	0.22	-2.4
2,647,628	+		EFB2_02517	0.22	-0.0
2,647,628	+		EFB2_02517	0.22	-1.6
2,647,628	+		EFB2_02517	0.22	+1.6
2,647,628	+		EFB2_02517	0.22	+1.0
2,647,628	+		EFB2_02517	0.22	-0.6
2,647,628	+		EFB2_02517	0.22	+0.1
2,647,628	+		EFB2_02517	0.22	-1.6
2,647,628	+		EFB2_02517	0.22	-0.2
2,647,628	+		EFB2_02517	0.22	-2.2
2,647,628	+		EFB2_02517	0.22	-2.4
2,647,628	+		EFB2_02517	0.22	+0.0
2,647,628	+		EFB2_02517	0.22	-0.1
2,647,628	+		EFB2_02517	0.22	+0.9
2,647,628	+		EFB2_02517	0.22	+1.1
2,647,628	+		EFB2_02517	0.22	-2.3
2,647,628	+		EFB2_02517	0.22	+0.1
2,647,628	+		EFB2_02517	0.22	-1.4
2,647,628	+		EFB2_02517	0.22	-1.5
2,647,628	+		EFB2_02517	0.22	-0.2
2,647,628	+		EFB2_02517	0.22	+2.5
2,647,628	+		EFB2_02517	0.22	+1.2
2,647,628	+		EFB2_02517	0.22	-0.6
2,647,628	+		EFB2_02517	0.22	-1.0
2,647,628	+		EFB2_02517	0.22	+0.9
2,647,628	+		EFB2_02517	0.22	-2.1
2,647,628	+		EFB2_02517	0.22	-1.7
2,647,628	+		EFB2_02517	0.22	-1.5
2,647,628	+		EFB2_02517	0.22	+0.1
2,647,628	+		EFB2_02517	0.22	+3.7
2,647,628	+		EFB2_02517	0.22	-1.0
2,647,628	+		EFB2_02517	0.22	-2.4
2,647,628	+		EFB2_02517	0.22	-0.3
2,647,628	+		EFB2_02517	0.22	-0.6
2,647,628	+		EFB2_02517	0.22	-0.5
2,647,628	+		EFB2_02517	0.22	+0.2
2,647,629	-		EFB2_02517	0.22	-0.0
2,647,629	-		EFB2_02517	0.22	+1.0
2,647,629	-		EFB2_02517	0.22	+1.8
2,647,629	-		EFB2_02517	0.22	-0.9
2,647,629	-		EFB2_02517	0.22	-0.9
2,647,629	-		EFB2_02517	0.22	-1.5
2,647,629	-		EFB2_02517	0.22	-1.5
2,647,629	-		EFB2_02517	0.22	-0.3
2,647,629	-		EFB2_02517	0.22	+2.0
2,647,629	-		EFB2_02517	0.22	-1.9
2,647,629	-		EFB2_02517	0.22	+0.1
2,647,629	-		EFB2_02517	0.22	+2.2
2,647,629	-		EFB2_02517	0.22	+1.8
2,647,629	-		EFB2_02517	0.22	+0.2
2,647,629	-		EFB2_02517	0.22	+1.6
2,647,629	-		EFB2_02517	0.22	-1.9
2,647,629	-		EFB2_02517	0.22	+1.6
2,647,629	-		EFB2_02517	0.22	-1.5
2,647,629	-		EFB2_02517	0.22	-2.3
2,647,629	-		EFB2_02517	0.22	-0.1
2,647,629	-		EFB2_02517	0.22	+1.2
2,647,629	-		EFB2_02517	0.22	+2.1
2,647,629	-		EFB2_02517	0.22	-0.7
2,647,629	-		EFB2_02517	0.22	+1.9
2,647,629	-		EFB2_02517	0.22	-0.6
2,647,629	-		EFB2_02517	0.22	+0.1
2,647,629	-		EFB2_02517	0.22	+0.8
2,647,629	-		EFB2_02517	0.22	-0.0
2,647,629	-		EFB2_02517	0.22	+0.0
2,647,629	-		EFB2_02517	0.22	+2.1
2,647,629	-		EFB2_02517	0.22	-0.6
2,647,629	-		EFB2_02517	0.22	-0.2
2,647,629	-		EFB2_02517	0.22	+0.7
2,647,629	-		EFB2_02517	0.22	+1.1
2,647,629	-		EFB2_02517	0.22	-2.1
2,647,629	-		EFB2_02517	0.22	+0.6
2,647,629	-		EFB2_02517	0.22	-0.9
2,647,629	-		EFB2_02517	0.22	+0.9
2,647,629	-		EFB2_02517	0.22	-0.2
2,647,629	-		EFB2_02517	0.22	+1.5
2,647,629	-		EFB2_02517	0.22	-1.9
2,647,629	-		EFB2_02517	0.22	-2.4
2,647,629	-		EFB2_02517	0.22	+2.0
2,647,629	-		EFB2_02517	0.22	-0.0
2,647,629	-		EFB2_02517	0.22	-0.9
2,647,629	-		EFB2_02517	0.22	+0.2
2,647,629	-		EFB2_02517	0.22	-1.7
2,647,629	-		EFB2_02517	0.22	+1.4
2,647,629	-		EFB2_02517	0.22	+1.2
2,647,629	-		EFB2_02517	0.22	-1.9
2,647,629	-		EFB2_02517	0.22	-0.3
2,647,629	-		EFB2_02517	0.22	-0.9
2,647,629	-		EFB2_02517	0.22	-0.2
2,647,629	-		EFB2_02517	0.22	-1.4
2,647,629	-		EFB2_02517	0.22	-2.6
2,647,629	-		EFB2_02517	0.22	-0.0
2,647,629	-		EFB2_02517	0.22	-0.8
2,647,629	-		EFB2_02517	0.22	+0.5
2,647,629	-		EFB2_02517	0.22	+1.5
2,647,629	-		EFB2_02517	0.22	+0.4
2,647,629	-		EFB2_02517	0.22	+0.6
2,647,629	-		EFB2_02517	0.22	-0.2
2,647,629	-		EFB2_02517	0.22	-1.7
2,647,629	-		EFB2_02517	0.22	+0.5
2,647,629	-		EFB2_02517	0.22	-0.1
2,647,629	-		EFB2_02517	0.22	-1.1
2,647,629	-		EFB2_02517	0.22	+0.1
2,647,629	-		EFB2_02517	0.22	+0.9
2,647,629	-		EFB2_02517	0.22	+0.7
2,647,629	-		EFB2_02517	0.22	-0.3
2,647,629	-		EFB2_02517	0.22	-0.4
2,647,629	-		EFB2_02517	0.22	+2.6
2,647,629	-		EFB2_02517	0.22	+0.1
2,647,629	-		EFB2_02517	0.22	-1.8
2,647,629	-		EFB2_02517	0.22	+0.9
2,647,629	-		EFB2_02517	0.22	-0.4
2,647,629	-		EFB2_02517	0.22	-0.3
2,647,629	-		EFB2_02517	0.22	-2.1
2,647,629	-		EFB2_02517	0.22	+1.4
2,647,629	-		EFB2_02517	0.22	-1.5
2,647,629	-		EFB2_02517	0.22	-0.4
2,647,629	-		EFB2_02517	0.22	+0.1
2,647,629	-		EFB2_02517	0.22	-0.7
2,647,629	-		EFB2_02517	0.22	+0.1
2,647,629	-		EFB2_02517	0.22	+0.7
2,647,629	-		EFB2_02517	0.22	-1.0
2,647,632	+		EFB2_02517	0.22	+1.1
2,647,632	+		EFB2_02517	0.22	-0.4
2,647,632	+		EFB2_02517	0.22	+1.4
2,647,632	+		EFB2_02517	0.22	+2.4
2,647,632	+		EFB2_02517	0.22	-2.1
2,647,632	+		EFB2_02517	0.22	-1.7
2,647,632	+		EFB2_02517	0.22	+1.9
2,647,632	+		EFB2_02517	0.22	-2.8
2,647,632	+		EFB2_02517	0.22	+2.1
2,647,632	+		EFB2_02517	0.22	-1.7
2,647,632	+		EFB2_02517	0.22	-0.4
2,647,632	+		EFB2_02517	0.22	-2.3
2,647,632	+		EFB2_02517	0.22	-1.8
2,647,632	+		EFB2_02517	0.22	-0.6
2,647,632	+		EFB2_02517	0.22	+1.4
2,647,632	+		EFB2_02517	0.22	-1.6
2,647,632	+		EFB2_02517	0.22	+1.0
2,647,632	+		EFB2_02517	0.22	+1.9
2,647,632	+		EFB2_02517	0.22	-1.6
2,647,632	+		EFB2_02517	0.22	-1.6
2,647,632	+		EFB2_02517	0.22	-1.5
2,647,633	-		EFB2_02517	0.22	-0.7
2,647,633	-		EFB2_02517	0.22	+2.0
2,647,633	-		EFB2_02517	0.22	-2.9
2,647,633	-		EFB2_02517	0.22	-0.5
2,647,633	-		EFB2_02517	0.22	-0.1
2,647,633	-		EFB2_02517	0.22	+0.7
2,647,633	-		EFB2_02517	0.22	-0.5
2,647,633	-		EFB2_02517	0.22	-2.5
2,647,633	-		EFB2_02517	0.22	+2.0
2,647,633	-		EFB2_02517	0.22	+2.2
2,647,633	-		EFB2_02517	0.22	+1.8
2,647,633	-		EFB2_02517	0.22	-0.6
2,647,633	-		EFB2_02517	0.22	-0.7
2,647,633	-		EFB2_02517	0.22	+0.2
2,647,633	-		EFB2_02517	0.22	+1.0
2,647,633	-		EFB2_02517	0.22	-0.1
2,647,633	-		EFB2_02517	0.22	+0.2
2,647,633	-		EFB2_02517	0.22	-1.7
2,647,633	-		EFB2_02517	0.22	+2.1
2,647,633	-		EFB2_02517	0.22	-1.7
2,647,633	-		EFB2_02517	0.22	+2.1
2,647,633	-		EFB2_02517	0.22	-1.0
2,647,633	-		EFB2_02517	0.22	-0.2
2,647,633	-		EFB2_02517	0.22	-0.2
2,647,633	-		EFB2_02517	0.22	-0.3
2,647,633	-		EFB2_02517	0.22	+0.0
2,647,633	-		EFB2_02517	0.22	+0.2
2,647,662	+		EFB2_02517	0.27	+0.9
2,647,663	-		EFB2_02517	0.27	-1.0
2,647,689	+		EFB2_02517	0.31	+0.5
2,647,689	+		EFB2_02517	0.31	+1.6
2,647,689	+		EFB2_02517	0.31	-2.4
2,647,689	+		EFB2_02517	0.31	-1.3
2,647,689	+		EFB2_02517	0.31	-1.0
2,647,689	+		EFB2_02517	0.31	-0.0
2,647,689	+		EFB2_02517	0.31	+1.0
2,647,690	-		EFB2_02517	0.31	-0.4
2,647,690	-		EFB2_02517	0.31	-1.5
2,647,690	-		EFB2_02517	0.31	-2.2
2,647,691	+		EFB2_02517	0.31	-0.2
2,647,715	+		EFB2_02517	0.35	+5.4
2,647,715	+		EFB2_02517	0.35	-1.4
2,647,715	+		EFB2_02517	0.35	-0.6
2,647,715	+		EFB2_02517	0.35	+1.0
2,647,715	+		EFB2_02517	0.35	+1.3
2,647,716	-		EFB2_02517	0.35	-2.2
2,647,716	-		EFB2_02517	0.35	-1.7
2,647,716	-		EFB2_02517	0.35	+0.8
2,647,716	-		EFB2_02517	0.35	-1.7
2,647,716	-		EFB2_02517	0.35	-0.9
2,647,716	-		EFB2_02517	0.35	-2.8
2,647,716	-		EFB2_02517	0.35	+0.5
2,647,727	+		EFB2_02517	0.37	-0.1
2,647,728	-		EFB2_02517	0.37	-0.8
2,647,728	-		EFB2_02517	0.37	+0.9
2,647,740	+		EFB2_02517	0.39	-1.0
2,647,741	-		EFB2_02517	0.39	-0.6
2,647,814	+		EFB2_02517	0.50	-0.6
2,647,814	+		EFB2_02517	0.50	+1.6
2,647,814	+		EFB2_02517	0.50	-1.0
2,647,815	-		EFB2_02517	0.50	+1.8
2,647,815	-		EFB2_02517	0.50	-2.6
2,647,815	-		EFB2_02517	0.50	+3.6
2,647,815	-		EFB2_02517	0.50	-1.2
2,647,815	-		EFB2_02517	0.50	-2.1
2,647,815	-		EFB2_02517	0.50	+0.3
2,647,815	-		EFB2_02517	0.50	+0.3
2,647,815	-		EFB2_02517	0.50	+0.3
2,647,815	-		EFB2_02517	0.50	-0.5
2,647,815	-		EFB2_02517	0.50	-1.7
2,647,815	-		EFB2_02517	0.50	+0.4
2,647,815	-		EFB2_02517	0.50	-0.2
2,647,815	-		EFB2_02517	0.50	+1.1
2,647,815	-		EFB2_02517	0.50	+1.2
2,647,815	-		EFB2_02517	0.50	-0.5
2,647,818	+		EFB2_02517	0.51	+1.0
2,647,852	+		EFB2_02517	0.56	-0.6
2,647,852	+		EFB2_02517	0.56	-1.7
2,647,852	+		EFB2_02517	0.56	-0.4
2,647,853	-		EFB2_02517	0.56	-0.4
2,647,853	-		EFB2_02517	0.56	+1.2
2,647,855	+		EFB2_02517	0.56	-0.5
2,647,855	+		EFB2_02517	0.56	-0.7
2,647,856	-		EFB2_02517	0.57	-0.0
2,647,856	-		EFB2_02517	0.57	+1.4
2,647,856	-		EFB2_02517	0.57	+0.5
2,647,884	+		EFB2_02517	0.61	+0.6
2,647,884	+		EFB2_02517	0.61	+0.3
2,647,885	-		EFB2_02517	0.61	-1.7
2,647,929	+		EFB2_02517	0.68	+0.3
2,647,929	+		EFB2_02517	0.68	+0.3
2,647,929	+		EFB2_02517	0.68	-0.2
2,647,930	-		EFB2_02517	0.68	+0.6
2,647,930	-		EFB2_02517	0.68	-0.1
2,647,930	-		EFB2_02517	0.68	-0.0
2,647,930	-		EFB2_02517	0.68	-0.4
2,647,930	-		EFB2_02517	0.68	-0.3
2,648,133	+				-0.4
2,648,133	+				-1.6
2,648,134	-				-2.9
2,648,134	-				+0.8
2,648,134	-				-1.1
2,648,171	-				+0.3
2,648,171	-				+1.7
2,648,190	+				-1.6
2,648,191	-				-0.6
2,648,191	-				-2.5
2,648,221	+		EFB2_02518	0.10	+2.6
2,648,221	+		EFB2_02518	0.10	-0.0
2,648,268	-		EFB2_02518	0.15	-1.6
2,648,276	-		EFB2_02518	0.16	+0.1
2,648,307	+		EFB2_02518	0.20	+0.3
2,648,307	+		EFB2_02518	0.20	+2.6
2,648,308	-		EFB2_02518	0.20	+0.5
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