Strain Fitness in Escherichia fergusonii Becca around EFB2_02132

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,271,146	+		EFB2_02130	0.48	-0.5
2,271,146	+		EFB2_02130	0.48	-1.1
2,271,147	-		EFB2_02130	0.48	+1.3
2,271,167	+		EFB2_02130	0.55	+1.2
2,271,167	+		EFB2_02130	0.55	+2.1
2,271,167	+		EFB2_02130	0.55	-0.2
2,271,167	+		EFB2_02130	0.55	-1.4
2,271,168	-		EFB2_02130	0.56	+3.6
2,271,168	-		EFB2_02130	0.56	-1.0
2,271,168	-		EFB2_02130	0.56	-0.8
2,271,168	-		EFB2_02130	0.56	+1.5
2,271,168	-		EFB2_02130	0.56	-2.3
2,271,168	-		EFB2_02130	0.56	-0.1
2,271,184	+		EFB2_02130	0.61	-1.3
2,271,184	+		EFB2_02130	0.61	-2.9
2,271,213	+		EFB2_02130	0.71	+0.3
2,271,213	+		EFB2_02130	0.71	-1.3
2,271,213	+		EFB2_02130	0.71	+2.8
2,271,213	+		EFB2_02130	0.71	-1.9
2,271,213	+		EFB2_02130	0.71	-2.3
2,271,214	-		EFB2_02130	0.71	-2.9
2,271,214	-		EFB2_02130	0.71	-0.8
2,271,288	+				-3.9
2,271,288	+				-4.5
2,271,288	+				-3.1
2,271,289	-				+2.1
2,271,289	-				+0.8
2,271,292	+				+0.2
2,271,293	-				-1.7
2,271,293	-				-1.8
2,271,299	+				-2.1
2,271,299	+				-1.7
2,271,310	+				-2.4
2,271,310	+				+0.1
2,271,311	-				-0.1
2,271,311	-				-1.9
2,271,398	+		EFB2_02131	0.19	-0.5
2,271,398	+		EFB2_02131	0.19	+0.9
2,271,398	+		EFB2_02131	0.19	-0.1
2,271,398	+		EFB2_02131	0.19	+1.5
2,271,398	+		EFB2_02131	0.19	-1.1
2,271,398	+		EFB2_02131	0.19	-2.1
2,271,398	+		EFB2_02131	0.19	-3.0
2,271,398	+		EFB2_02131	0.19	-0.6
2,271,399	-		EFB2_02131	0.19	+1.8
2,271,399	-		EFB2_02131	0.19	+0.2
2,271,399	-		EFB2_02131	0.19	+0.0
2,271,400	+		EFB2_02131	0.19	-1.9
2,271,401	-		EFB2_02131	0.19	-1.1
2,271,401	-		EFB2_02131	0.19	-2.4
2,271,424	+		EFB2_02131	0.24	+2.2
2,271,424	+		EFB2_02131	0.24	+1.8
2,271,424	+		EFB2_02131	0.24	-0.7
2,271,424	+		EFB2_02131	0.24	-0.8
2,271,424	+		EFB2_02131	0.24	-1.4
2,271,424	+		EFB2_02131	0.24	-1.3
2,271,425	-		EFB2_02131	0.24	-2.4
2,271,425	-		EFB2_02131	0.24	-0.1
2,271,425	-		EFB2_02131	0.24	+1.2
2,271,472	+		EFB2_02131	0.32	-0.2
2,271,473	-		EFB2_02131	0.32	-0.9
2,271,541	+		EFB2_02131	0.45	+0.9
2,271,542	-		EFB2_02131	0.45	+0.0
2,271,542	-		EFB2_02131	0.45	-1.5
2,271,542	-		EFB2_02131	0.45	+1.6
2,271,580	+		EFB2_02131	0.52	+0.2
2,271,580	+		EFB2_02131	0.52	-0.8
2,271,580	+		EFB2_02131	0.52	+0.3
2,271,580	+		EFB2_02131	0.52	+1.6
2,271,580	+		EFB2_02131	0.52	+0.4
2,271,580	+		EFB2_02131	0.52	+2.0
2,271,581	-		EFB2_02131	0.52	-1.1
2,271,581	-		EFB2_02131	0.52	+0.8
2,271,581	-		EFB2_02131	0.52	-1.2
2,271,581	-		EFB2_02131	0.52	+2.3
2,271,581	-		EFB2_02131	0.52	+0.6
2,271,581	-		EFB2_02131	0.52	-0.9
2,271,616	+		EFB2_02131	0.58	-0.1
2,271,616	+		EFB2_02131	0.58	+1.2
2,271,617	-		EFB2_02131	0.58	+0.5
2,271,617	-		EFB2_02131	0.58	+1.6
2,271,617	-		EFB2_02131	0.58	+1.5
2,271,652	+		EFB2_02131	0.65	-0.5
2,271,652	+		EFB2_02131	0.65	-2.9
2,271,653	-		EFB2_02131	0.65	+0.9
2,271,653	-		EFB2_02131	0.65	-0.4
2,271,653	-		EFB2_02131	0.65	-0.4
2,271,669	-		EFB2_02131	0.68	+2.3
2,271,759	+		EFB2_02131	0.84	-0.5
2,271,759	+		EFB2_02131	0.84	+2.1
2,271,759	+		EFB2_02131	0.84	-0.6
2,271,759	+		EFB2_02131	0.84	-1.2
2,271,760	-		EFB2_02131	0.84	+3.3
2,271,760	-		EFB2_02131	0.84	+1.9
2,271,760	-		EFB2_02131	0.84	-1.3
2,271,787	+		EFB2_02131	0.89	-1.4
2,271,787	+		EFB2_02131	0.89	+0.5
2,271,787	+		EFB2_02131	0.89	+0.9
2,271,788	-		EFB2_02131	0.89	-0.7
2,271,794	+				-2.1
2,271,794	+				-1.7
2,271,794	+				-2.8
2,271,795	-				+0.6
2,271,868	+				+0.6
2,271,869	-				+2.0
2,271,869	-				+0.3
2,271,869	-				-1.6
2,271,870	+				-0.0
2,271,870	+				-0.5
2,271,870	+				-2.6
2,271,870	+				-1.5
2,271,870	+				-0.5
2,271,870	+				-0.8
2,271,870	+				-3.6
2,271,870	+				-1.4
2,271,871	-				-1.6
2,271,871	-				+1.3
2,271,934	+				+0.1
2,271,934	+				+1.2
2,271,934	+				-1.1
2,271,934	+				-3.2
2,271,934	+				-0.9
2,271,934	+				-2.1
2,271,934	+				-0.9
2,271,935	-				-0.9
2,271,935	-				+0.7
2,271,935	-				+0.2
2,271,935	-				-1.7
2,271,935	-				-1.7
2,271,935	-				+0.3
2,271,956	+				-0.7
2,271,957	-				-1.6
2,271,964	+				-0.3
2,271,964	+				+1.0
2,271,965	-				-0.4
2,271,965	-				-1.9
2,271,985	+				-0.4
2,271,985	+				-0.7
2,271,985	+				-2.6
2,271,985	+				+1.4
2,271,985	+				-1.0
2,271,985	+				+0.2
2,271,985	+				-1.5
2,271,986	-				+0.2
2,271,986	-				+1.0
2,271,986	-				-1.7
2,272,090	+				-3.1
2,272,091	-				-1.5
2,272,093	+				-2.8
2,272,093	+				-0.8
2,272,093	+				-1.2
2,272,094	-				-0.6
2,272,094	-				+0.9
2,272,094	-				+1.5
2,272,094	-				-1.9
2,272,094	-				-2.0
2,272,094	-				-1.2
2,272,117	+				-0.9
2,272,117	+				+1.3
2,272,118	-				-1.7
2,272,177	+				+1.1
2,272,177	+				-2.1
2,272,180	+		EFB2_02132	0.10	-2.9
2,272,181	-		EFB2_02132	0.10	-0.1
2,272,181	-		EFB2_02132	0.10	+0.9
2,272,181	-		EFB2_02132	0.10	+1.5
2,272,194	+		EFB2_02132	0.12	-0.7
2,272,194	+		EFB2_02132	0.12	-3.0
2,272,205	+		EFB2_02132	0.14	+0.4
2,272,206	-		EFB2_02132	0.14	-2.6
2,272,225	+		EFB2_02132	0.17	-1.8
2,272,225	+		EFB2_02132	0.17	-0.1
2,272,226	-		EFB2_02132	0.18	-1.4
2,272,254	+		EFB2_02132	0.22	-0.9
2,272,254	+		EFB2_02132	0.22	-1.7
2,272,254	+		EFB2_02132	0.22	-3.6
2,272,254	+		EFB2_02132	0.22	-0.7
2,272,254	+		EFB2_02132	0.22	-1.4
2,272,254	+		EFB2_02132	0.22	-2.4
2,272,255	-		EFB2_02132	0.22	+0.1
2,272,255	-		EFB2_02132	0.22	-3.7
2,272,255	-		EFB2_02132	0.22	-2.9
2,272,294	+		EFB2_02132	0.29	+0.1
2,272,317	+		EFB2_02132	0.33	+0.2
2,272,317	+		EFB2_02132	0.33	-1.2
2,272,318	-		EFB2_02132	0.33	+1.7
2,272,323	+		EFB2_02132	0.33	+1.5
2,272,324	-		EFB2_02132	0.34	-2.8
2,272,328	+		EFB2_02132	0.34	-2.1
2,272,328	+		EFB2_02132	0.34	-0.0
2,272,329	-		EFB2_02132	0.34	-0.4
2,272,329	-		EFB2_02132	0.34	-1.5
2,272,329	-		EFB2_02132	0.34	-0.1
2,272,348	+		EFB2_02132	0.38	-0.8
2,272,348	+		EFB2_02132	0.38	+1.3
2,272,349	-		EFB2_02132	0.38	+1.3
2,272,353	+		EFB2_02132	0.38	+0.2
2,272,353	+		EFB2_02132	0.38	+0.1
2,272,353	+		EFB2_02132	0.38	-0.7
2,272,354	-		EFB2_02132	0.39	+0.0
2,272,357	+		EFB2_02132	0.39	+3.3
2,272,357	+		EFB2_02132	0.39	-2.6
2,272,357	+		EFB2_02132	0.39	-2.7
2,272,358	-		EFB2_02132	0.39	+2.9
2,272,358	-		EFB2_02132	0.39	-1.0
2,272,383	+		EFB2_02132	0.43	+0.5
2,272,384	-		EFB2_02132	0.43	-1.6
2,272,384	-		EFB2_02132	0.43	+0.7
2,272,384	-		EFB2_02132	0.43	+1.5
2,272,511	+		EFB2_02132	0.64	+1.2
2,272,511	+		EFB2_02132	0.64	+0.2
2,272,511	+		EFB2_02132	0.64	-0.9
2,272,511	+		EFB2_02132	0.64	+1.6
2,272,512	-		EFB2_02132	0.64	-1.2
2,272,512	-		EFB2_02132	0.64	+1.6
2,272,512	-		EFB2_02132	0.64	+0.6
2,272,512	-		EFB2_02132	0.64	+0.5
2,272,581	-		EFB2_02132	0.76	+0.0
2,272,630	+		EFB2_02132	0.84	+2.7
2,272,631	-		EFB2_02132	0.84	-1.5
2,272,631	-		EFB2_02132	0.84	-1.6
2,272,636	+		EFB2_02132	0.85	-0.8
2,272,636	+		EFB2_02132	0.85	-0.2
2,272,636	+		EFB2_02132	0.85	-2.0
2,272,636	+		EFB2_02132	0.85	-1.5
2,272,636	+		EFB2_02132	0.85	+1.4
2,272,636	+		EFB2_02132	0.85	-0.0
2,272,637	-		EFB2_02132	0.85	-2.0
2,272,637	-		EFB2_02132	0.85	-3.1
2,272,637	-		EFB2_02132	0.85	-0.4
2,272,637	-		EFB2_02132	0.85	-2.8
2,272,637	-		EFB2_02132	0.85	-2.2
2,272,699	+				-1.6
2,272,700	-				-0.5
2,272,700	-				-1.3
2,272,700	-				+2.0
2,272,753	+				-1.1
2,272,753	+				+0.8
2,272,876	+				+0.3
2,272,877	-				-3.2
2,272,877	-				-1.9
2,272,880	+				+0.7
2,272,881	-				-0.1
2,272,881	-				+0.6
2,272,881	-				+0.6
2,272,884	+				+0.1
2,272,907	+				-0.8
2,272,907	+				-0.6
2,272,907	+				+2.1
2,272,907	+				-0.4
2,272,907	+				+1.8
2,272,907	+				+0.0
2,272,908	-				-0.6
2,272,908	-				-0.5
2,272,908	-				-1.1
2,272,908	-				+1.2
2,272,909	+				+0.9
2,272,909	+				-0.5
2,272,909	+				-0.3
2,272,909	+				-3.2
2,272,909	+				-0.9
2,272,909	+				-1.1
2,272,910	-				-2.4
2,272,910	-				-1.4
2,272,910	-				-1.8
2,272,910	-				-1.2
2,272,910	-				+0.2
2,272,910	-				-0.1
2,272,910	-				+1.3
2,272,910	-				+0.7
2,272,933	-				+0.9
2,272,959	+				-0.8
2,272,959	+				+1.2
2,272,960	-				+1.5
2,272,960	-				-0.2
2,272,960	-				-0.6
2,272,960	-				-1.3
2,272,978	+				-0.6
2,272,978	+				+0.2
2,272,978	+				-1.5
2,272,978	+				+0.4
2,272,979	-				-2.7
2,272,994	+				-1.1
2,272,994	+				-3.4
2,272,994	+				+1.4
2,272,994	+				+0.5
2,272,994	+				-0.4
2,273,019	+				+1.6
2,273,019	+				+0.3
2,273,019	+				-0.2
2,273,019	+				-1.6
2,273,019	+				+2.5
2,273,020	-				-0.3
2,273,020	-				-1.8
2,273,020	-				-2.2
2,273,020	-				-1.0
2,273,020	-				+0.9
2,273,023	+				+0.3
2,273,023	+				-1.4
2,273,024	-				-1.8
2,273,024	-				-1.9
2,273,024	-				-0.1
2,273,031	+				-0.3
2,273,039	+				-1.1
2,273,039	+				-1.1
2,273,039	+				-2.6
2,273,039	+				+0.4
2,273,039	+				-0.8
2,273,039	+				+0.5
2,273,039	+				-0.7
2,273,039	+				-1.8
2,273,040	-				-1.7
2,273,040	-				-2.1
2,273,040	-				+0.9
2,273,040	-				-1.2
2,273,040	-				+0.1
2,273,040	-				-1.0
2,273,055	+				-1.7
2,273,071	+				-0.6
2,273,072	-				+1.3
2,273,106	+				-1.2
2,273,106	+				+1.1
2,273,107	-				-1.0
2,273,107	-				-3.2
2,273,107	-				-0.1
2,273,128	+				-1.2
2,273,129	-				+1.4
2,273,179	-				-1.6
2,273,203	-				-0.2
2,273,203	-				-0.3
2,273,236	-				-1.9
2,273,244	+				-0.7
2,273,244	+				-2.7
2,273,245	-				-0.0
2,273,313	+		EFB2_02133	0.26	-0.3
2,273,313	+		EFB2_02133	0.26	+1.5
2,273,313	+		EFB2_02133	0.26	-0.9
2,273,313	+		EFB2_02133	0.26	-0.0
2,273,313	+		EFB2_02133	0.26	-0.8
2,273,313	+		EFB2_02133	0.26	+0.5
2,273,313	+		EFB2_02133	0.26	-0.2
2,273,313	+		EFB2_02133	0.26	-0.0
2,273,313	+		EFB2_02133	0.26	-0.3
2,273,314	-		EFB2_02133	0.26	+1.5
2,273,314	-		EFB2_02133	0.26	-0.0
2,273,314	-		EFB2_02133	0.26	-2.7
2,273,314	-		EFB2_02133	0.26	-0.5
2,273,347	+		EFB2_02133	0.36	-1.2
2,273,347	+		EFB2_02133	0.36	+0.2
2,273,437	+		EFB2_02133	0.62	-3.7
2,273,437	+		EFB2_02133	0.62	-1.7
2,273,437	+		EFB2_02133	0.62	+0.0
2,273,437	+		EFB2_02133	0.62	-1.6
2,273,437	+		EFB2_02133	0.62	-1.2
2,273,437	+		EFB2_02133	0.62	+0.0
2,273,438	-		EFB2_02133	0.63	-1.9
2,273,451	+		EFB2_02133	0.67	+0.2
2,273,452	-		EFB2_02133	0.67	-0.8
2,273,505	+		EFB2_02133	0.83	-1.0
2,273,505	+		EFB2_02133	0.83	-1.8
2,273,505	+		EFB2_02133	0.83	-0.1
2,273,506	-		EFB2_02133	0.83	+3.7
2,273,553	+				+0.0
2,273,560	+				-2.0
2,273,560	+				+3.7
2,273,561	-				-3.4
2,273,564	+				-2.8
2,273,564	+				-0.2
2,273,564	+				+0.1
2,273,565	-				-0.3
2,273,565	-				-0.8
2,273,565	-				-2.2
2,273,565	-				-2.0
2,273,577	+				-1.3
2,273,577	+				+0.3
2,273,577	+				-1.6
2,273,578	-				-2.3
2,273,578	-				+0.1
2,273,578	-				+1.7
2,273,578	-				-0.1
2,273,578	-				-0.8
2,273,578	-				+1.9
2,273,578	-				+1.8
2,273,589	+				+1.4
2,273,590	-				-2.4
2,273,604	+				+1.4
2,273,604	+				-2.1
2,273,632	-		EFB2_02134	0.14	-0.3
2,273,662	+		EFB2_02134	0.20	+1.5
2,273,670	+		EFB2_02134	0.22	-2.1
2,273,699	-		EFB2_02134	0.28	+1.1
2,273,699	-		EFB2_02134	0.28	+1.9
2,273,729	+		EFB2_02134	0.34	+1.1
2,273,729	+		EFB2_02134	0.34	+0.3