Strain Fitness in Escherichia fergusonii Becca around EFB2_01912

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,038,475	-		EFB2_01911	0.80	-0.3
2,038,532	+		EFB2_01911	0.82	-0.3
2,038,532	+		EFB2_01911	0.82	+0.5
2,038,532	+		EFB2_01911	0.82	+1.2
2,038,532	+		EFB2_01911	0.82	-0.8
2,038,532	+		EFB2_01911	0.82	+1.9
2,038,532	+		EFB2_01911	0.82	-1.3
2,038,532	+		EFB2_01911	0.82	-2.7
2,038,532	+		EFB2_01911	0.82	-0.3
2,038,532	+		EFB2_01911	0.82	-2.8
2,038,532	+		EFB2_01911	0.82	-0.8
2,038,532	+		EFB2_01911	0.82	-1.0
2,038,532	+		EFB2_01911	0.82	-3.1
2,038,532	+		EFB2_01911	0.82	+1.0
2,038,532	+		EFB2_01911	0.82	-0.8
2,038,532	+		EFB2_01911	0.82	+0.4
2,038,532	+		EFB2_01911	0.82	-0.7
2,038,532	+		EFB2_01911	0.82	-2.0
2,038,532	+		EFB2_01911	0.82	+0.3
2,038,532	+		EFB2_01911	0.82	+0.8
2,038,532	+		EFB2_01911	0.82	-1.3
2,038,532	+		EFB2_01911	0.82	+0.8
2,038,532	+		EFB2_01911	0.82	-0.3
2,038,532	+		EFB2_01911	0.82	-0.6
2,038,532	+		EFB2_01911	0.82	-0.6
2,038,533	-		EFB2_01911	0.82	+1.2
2,038,533	-		EFB2_01911	0.82	+0.9
2,038,533	-		EFB2_01911	0.82	-0.8
2,038,533	-		EFB2_01911	0.82	-0.7
2,038,533	-		EFB2_01911	0.82	-0.2
2,038,533	-		EFB2_01911	0.82	-3.9
2,038,533	-		EFB2_01911	0.82	+0.6
2,038,533	-		EFB2_01911	0.82	+1.4
2,038,533	-		EFB2_01911	0.82	-2.1
2,038,533	-		EFB2_01911	0.82	-0.7
2,038,533	-		EFB2_01911	0.82	-2.2
2,038,533	-		EFB2_01911	0.82	-0.0
2,038,533	-		EFB2_01911	0.82	-0.4
2,038,533	-		EFB2_01911	0.82	+1.4
2,038,533	-		EFB2_01911	0.82	-1.0
2,038,533	-		EFB2_01911	0.82	+1.1
2,038,533	-		EFB2_01911	0.82	-1.2
2,038,533	-		EFB2_01911	0.82	+0.9
2,038,533	-		EFB2_01911	0.82	-0.6
2,038,533	-		EFB2_01911	0.82	-2.6
2,038,533	-		EFB2_01911	0.82	-0.5
2,038,533	-		EFB2_01911	0.82	-1.6
2,038,533	-		EFB2_01911	0.82	+0.5
2,038,533	-		EFB2_01911	0.82	+0.8
2,038,547	+		EFB2_01911	0.82	+0.8
2,038,547	+		EFB2_01911	0.82	+1.4
2,038,547	+		EFB2_01911	0.82	-1.1
2,038,547	+		EFB2_01911	0.82	-0.0
2,038,547	+		EFB2_01911	0.82	+2.0
2,038,547	+		EFB2_01911	0.82	+0.4
2,038,547	+		EFB2_01911	0.82	-2.9
2,038,547	+		EFB2_01911	0.82	+1.2
2,038,547	+		EFB2_01911	0.82	+0.2
2,038,547	+		EFB2_01911	0.82	-1.6
2,038,547	+		EFB2_01911	0.82	-0.3
2,038,547	+		EFB2_01911	0.82	-0.9
2,038,547	+		EFB2_01911	0.82	-1.6
2,038,547	+		EFB2_01911	0.82	+1.1
2,038,547	+		EFB2_01911	0.82	-1.3
2,038,547	+		EFB2_01911	0.82	-0.4
2,038,547	+		EFB2_01911	0.82	+1.1
2,038,547	+		EFB2_01911	0.82	+0.7
2,038,547	+		EFB2_01911	0.82	+1.1
2,038,547	+		EFB2_01911	0.82	+0.9
2,038,547	+		EFB2_01911	0.82	-0.8
2,038,547	+		EFB2_01911	0.82	+1.2
2,038,547	+		EFB2_01911	0.82	-3.9
2,038,547	+		EFB2_01911	0.82	+0.6
2,038,547	+		EFB2_01911	0.82	-0.1
2,038,547	+		EFB2_01911	0.82	-2.3
2,038,547	+		EFB2_01911	0.82	-0.1
2,038,547	+		EFB2_01911	0.82	-2.7
2,038,547	+		EFB2_01911	0.82	+1.5
2,038,547	+		EFB2_01911	0.82	-0.5
2,038,547	+		EFB2_01911	0.82	-0.1
2,038,547	+		EFB2_01911	0.82	-0.3
2,038,547	+		EFB2_01911	0.82	-0.8
2,038,547	+		EFB2_01911	0.82	+1.9
2,038,547	+		EFB2_01911	0.82	+0.7
2,038,547	+		EFB2_01911	0.82	+0.8
2,038,547	+		EFB2_01911	0.82	+0.0
2,038,547	+		EFB2_01911	0.82	-0.6
2,038,547	+		EFB2_01911	0.82	-0.8
2,038,548	-		EFB2_01911	0.82	-0.8
2,038,548	-		EFB2_01911	0.82	-1.3
2,038,548	-		EFB2_01911	0.82	-1.2
2,038,548	-		EFB2_01911	0.82	+0.4
2,038,548	-		EFB2_01911	0.82	+0.8
2,038,548	-		EFB2_01911	0.82	-2.9
2,038,548	-		EFB2_01911	0.82	+0.0
2,038,548	-		EFB2_01911	0.82	-3.2
2,038,548	-		EFB2_01911	0.82	+0.8
2,038,548	-		EFB2_01911	0.82	-0.2
2,038,548	-		EFB2_01911	0.82	+1.4
2,038,548	-		EFB2_01911	0.82	+0.0
2,038,548	-		EFB2_01911	0.82	+0.3
2,038,548	-		EFB2_01911	0.82	+1.2
2,038,548	-		EFB2_01911	0.82	+1.2
2,038,548	-		EFB2_01911	0.82	+0.6
2,038,548	-		EFB2_01911	0.82	+1.6
2,038,548	-		EFB2_01911	0.82	+2.8
2,038,548	-		EFB2_01911	0.82	+0.4
2,038,548	-		EFB2_01911	0.82	+1.8
2,038,548	-		EFB2_01911	0.82	-2.0
2,038,548	-		EFB2_01911	0.82	+1.6
2,038,548	-		EFB2_01911	0.82	+0.2
2,038,548	-		EFB2_01911	0.82	-3.9
2,038,548	-		EFB2_01911	0.82	+1.0
2,038,548	-		EFB2_01911	0.82	-2.0
2,038,548	-		EFB2_01911	0.82	-0.4
2,038,548	-		EFB2_01911	0.82	-1.2
2,038,548	-		EFB2_01911	0.82	-0.3
2,038,548	-		EFB2_01911	0.82	+0.4
2,038,548	-		EFB2_01911	0.82	+1.2
2,038,548	-		EFB2_01911	0.82	-0.2
2,038,549	+		EFB2_01911	0.82	-1.2
2,038,549	+		EFB2_01911	0.82	-2.6
2,038,549	+		EFB2_01911	0.82	-1.5
2,038,549	+		EFB2_01911	0.82	+1.4
2,038,549	+		EFB2_01911	0.82	+2.7
2,038,549	+		EFB2_01911	0.82	-3.9
2,038,549	+		EFB2_01911	0.82	-2.7
2,038,549	+		EFB2_01911	0.82	-1.0
2,038,549	+		EFB2_01911	0.82	+1.7
2,038,549	+		EFB2_01911	0.82	-0.6
2,038,549	+		EFB2_01911	0.82	-3.4
2,038,550	-		EFB2_01911	0.82	-0.5
2,038,550	-		EFB2_01911	0.82	+0.9
2,038,550	-		EFB2_01911	0.82	+0.6
2,038,550	-		EFB2_01911	0.82	-0.1
2,038,550	-		EFB2_01911	0.82	+0.1
2,038,550	-		EFB2_01911	0.82	+2.8
2,038,550	-		EFB2_01911	0.82	-1.0
2,038,550	-		EFB2_01911	0.82	-0.8
2,038,550	-		EFB2_01911	0.82	+1.9
2,038,550	-		EFB2_01911	0.82	-0.9
2,038,550	-		EFB2_01911	0.82	-2.2
2,038,550	-		EFB2_01911	0.82	+1.6
2,038,550	-		EFB2_01911	0.82	-1.2
2,038,550	-		EFB2_01911	0.82	+1.4
2,038,617	-		EFB2_01911	0.83	+0.2
2,038,617	-		EFB2_01911	0.83	+1.0
2,038,664	+		EFB2_01911	0.84	-1.7
2,038,665	-		EFB2_01911	0.84	-0.4
2,038,730	+		EFB2_01911	0.86	-3.0
2,038,730	+		EFB2_01911	0.86	-0.3
2,038,730	+		EFB2_01911	0.86	+1.0
2,038,730	+		EFB2_01911	0.86	-2.0
2,038,731	-		EFB2_01911	0.86	-1.3
2,038,731	-		EFB2_01911	0.86	-1.8
2,038,731	-		EFB2_01911	0.86	-2.2
2,038,731	-		EFB2_01911	0.86	+0.0
2,038,800	+		EFB2_01911	0.87	-1.1
2,038,800	+		EFB2_01911	0.87	-0.1
2,038,820	-		EFB2_01911	0.88	-0.6
2,038,869	+		EFB2_01911	0.89	+0.2
2,038,870	-		EFB2_01911	0.89	+1.3
2,038,872	+		EFB2_01911	0.89	-1.6
2,038,872	+		EFB2_01911	0.89	+1.4
2,038,872	+		EFB2_01911	0.89	+0.7
2,038,872	+		EFB2_01911	0.89	-1.8
2,038,872	+		EFB2_01911	0.89	-2.5
2,038,872	+		EFB2_01911	0.89	-0.8
2,038,872	+		EFB2_01911	0.89	-3.8
2,038,872	+		EFB2_01911	0.89	-2.6
2,038,873	-		EFB2_01911	0.89	+2.1
2,038,873	-		EFB2_01911	0.89	+0.2
2,038,873	-		EFB2_01911	0.89	-0.5
2,038,873	-		EFB2_01911	0.89	-0.8
2,038,883	+		EFB2_01911	0.89	-0.8
2,038,883	+		EFB2_01911	0.89	-1.6
2,038,883	+		EFB2_01911	0.89	-1.3
2,038,883	+		EFB2_01911	0.89	+0.9
2,038,883	+		EFB2_01911	0.89	-0.8
2,038,884	-		EFB2_01911	0.89	-0.8
2,038,884	-		EFB2_01911	0.89	+0.1
2,038,884	-		EFB2_01911	0.89	-0.2
2,038,884	-		EFB2_01911	0.89	-2.0
2,038,884	-		EFB2_01911	0.89	+0.2
2,038,884	-		EFB2_01911	0.89	+0.0
2,038,884	-		EFB2_01911	0.89	+0.8
2,038,884	-		EFB2_01911	0.89	-1.2
2,038,929	+		EFB2_01911	0.90	-0.0
2,038,957	+				+0.4
2,038,957	+				-2.6
2,038,957	+				+3.9
2,038,957	+				+1.1
2,038,957	+				+0.7
2,038,957	+				-2.6
2,038,957	+				+0.8
2,038,957	+				-1.0
2,038,957	+				+1.7
2,038,957	+				+1.0
2,038,958	-				-1.7
2,038,958	-				-0.1
2,038,958	-				-2.2
2,038,958	-				-2.0
2,038,973	+				-1.5
2,038,973	+				-2.5
2,038,973	+				-2.1
2,038,973	+				-1.1
2,038,973	+				+1.5
2,038,973	+				+1.9
2,038,973	+				-1.5
2,038,974	-				-2.1
2,038,974	-				-3.6
2,038,974	-				-0.2
2,038,974	-				-0.2
2,038,974	-				-0.4
2,038,974	-				+0.8
2,038,974	-				+0.4
2,038,998	+				+2.5
2,038,998	+				-0.8
2,038,999	-				-0.2
2,038,999	-				+0.7
2,039,004	+				-1.3
2,039,004	+				+1.4
2,039,004	+				-1.7
2,039,005	-				-1.2
2,039,005	-				+2.0
2,039,005	-				+0.4
2,039,005	-				-0.6
2,039,005	-				-0.7
2,039,005	-				+1.0
2,039,005	-				-0.3
2,039,005	-				-0.1
2,039,005	-				+3.1
2,039,072	+				+1.2
2,039,072	+				+0.8
2,039,072	+				-2.1
2,039,072	+				+1.1
2,039,072	+				+0.4
2,039,072	+				-1.3
2,039,072	+				-1.0
2,039,072	+				+0.1
2,039,072	+				+1.2
2,039,072	+				+1.0
2,039,072	+				+0.7
2,039,072	+				-3.0
2,039,073	-				+1.4
2,039,073	-				-1.5
2,039,073	-				-2.6
2,039,073	-				-0.6
2,039,073	-				+1.2
2,039,073	-				-1.9
2,039,073	-				+0.6
2,039,073	-				-2.9
2,039,073	-				-1.6
2,039,073	-				-0.1
2,039,073	-				-1.1
2,039,073	-				+0.3
2,039,073	-				-0.4
2,039,073	-				-1.1
2,039,193	+				-2.1
2,039,193	+				+0.1
2,039,194	-				+0.2
2,039,194	-				-0.5
2,039,194	-				-1.3
2,039,194	-				-1.6
2,039,194	-				-2.4
2,039,194	-				-1.1
2,039,194	-				+1.6
2,039,196	+				+1.4
2,039,196	+				-0.3
2,039,196	+				-3.3
2,039,196	+				-2.1
2,039,196	+				-0.2
2,039,197	-				+1.4
2,039,197	-				+1.6
2,039,197	-				-2.4
2,039,197	-				-2.0
2,039,197	-				+2.8
2,039,197	-				-0.2
2,039,197	-				+2.4
2,039,210	+				-2.5
2,039,210	+				-1.6
2,039,210	+				+0.9
2,039,210	+				+0.8
2,039,210	+				-2.4
2,039,210	+				+0.4
2,039,210	+				+1.2
2,039,210	+				+0.7
2,039,210	+				+0.6
2,039,210	+				+0.1
2,039,210	+				+0.3
2,039,210	+				+0.7
2,039,210	+				-2.0
2,039,210	+				-0.4
2,039,211	-				-1.7
2,039,211	-				+0.9
2,039,211	-				+0.4
2,039,211	-				-1.3
2,039,211	-				-0.5
2,039,211	-				+0.9
2,039,211	-				-2.3
2,039,211	-				-2.8
2,039,211	-				+0.2
2,039,266	+				-1.3
2,039,266	+				-2.2
2,039,266	+				-1.0
2,039,267	-				+0.0
2,039,267	-				+2.4
2,039,433	+				-0.4
2,039,443	+				+1.5
2,039,443	+				-1.8
2,039,443	+				-1.1
2,039,444	-				-0.0
2,039,444	-				-3.1
2,039,444	-				+0.9
2,039,445	+				-1.7
2,039,445	+				+0.6
2,039,446	-				-0.0
2,039,446	-				+0.1
2,039,446	-				+0.0
2,039,482	+				+1.5
2,039,482	+				+2.5
2,039,482	+				+0.2
2,039,482	+				-1.7
2,039,482	+				-1.8
2,039,482	+				+0.6
2,039,482	+				-2.7
2,039,483	-				+0.2
2,039,483	-				-0.6
2,039,483	-				+0.2
2,039,483	-				-0.2
2,039,483	-				-2.8
2,039,483	-				-0.3
2,039,483	-				+0.4
2,039,483	-				-1.6
2,039,486	+				-2.5
2,039,486	+				-0.8
2,039,486	+				+0.8
2,039,486	+				-1.1
2,039,486	+				-1.5
2,039,486	+				-0.6
2,039,486	+				+2.7
2,039,486	+				+1.0
2,039,486	+				+0.8
2,039,486	+				-2.7
2,039,487	-				-2.2
2,039,487	-				-1.6
2,039,487	-				-0.6
2,039,487	-				-1.1
2,039,487	-				+0.8
2,039,487	-				+0.1
2,039,487	-				+0.8
2,039,487	-				-3.2
2,039,487	-				+0.0
2,039,487	-				+0.4
2,039,487	-				-3.1
2,039,487	-				-0.2
2,039,487	-				-1.3
2,039,487	-				-1.8
2,039,487	-				+0.4
2,039,487	-				+0.6
2,039,487	-				+0.8
2,039,527	+				+0.7
2,039,578	-				+2.0
2,039,578	-				+1.4
2,039,637	+				-1.6
2,039,637	+				+2.1
2,039,638	-				-2.8
2,039,638	-				+0.0
2,039,638	-				-1.1
2,039,659	+				+0.8
2,039,659	+				+0.9
2,039,659	+				-0.6
2,039,659	+				+0.8
2,039,660	-				+1.9
2,039,660	-				+1.1
2,039,660	-				-1.1
2,039,660	-				+1.4
2,039,660	-				+0.4
2,039,660	-				+0.9
2,039,672	+				-1.3
2,039,673	-				+1.5
2,039,781	+		EFB2_01912	0.11	+0.4
2,039,781	+		EFB2_01912	0.11	-1.5
2,039,781	+		EFB2_01912	0.11	-2.2
2,039,781	+		EFB2_01912	0.11	-2.5
2,039,781	+		EFB2_01912	0.11	-1.0
2,039,782	-		EFB2_01912	0.11	-2.0
2,039,782	-		EFB2_01912	0.11	+1.0
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