Strain Fitness in Escherichia fergusonii Becca around EFB2_01123

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
1,173,695	+		EFB2_01122	0.35	+0.2
1,173,696	-		EFB2_01122	0.35	-0.3
1,173,696	-		EFB2_01122	0.35	+0.4
1,173,733	+		EFB2_01122	0.38	-1.7
1,173,734	-		EFB2_01122	0.38	-0.8
1,173,734	-		EFB2_01122	0.38	-0.1
1,173,734	-		EFB2_01122	0.38	-0.5
1,173,779	+		EFB2_01122	0.41	+0.2
1,173,779	+		EFB2_01122	0.41	-0.5
1,173,779	+		EFB2_01122	0.41	-0.2
1,173,779	+		EFB2_01122	0.41	-0.9
1,173,819	+		EFB2_01122	0.44	+0.3
1,173,819	+		EFB2_01122	0.44	-0.5
1,173,819	+		EFB2_01122	0.44	+1.1
1,173,819	+		EFB2_01122	0.44	-1.5
1,173,819	+		EFB2_01122	0.44	-0.3
1,173,819	+		EFB2_01122	0.44	-0.4
1,173,819	+		EFB2_01122	0.44	-1.4
1,173,820	-		EFB2_01122	0.44	-0.1
1,173,820	-		EFB2_01122	0.44	+1.1
1,173,820	-		EFB2_01122	0.44	+1.4
1,173,820	-		EFB2_01122	0.44	+1.2
1,173,820	-		EFB2_01122	0.44	+0.4
1,173,826	-		EFB2_01122	0.45	-0.9
1,173,867	+		EFB2_01122	0.48	+2.6
1,173,939	+		EFB2_01122	0.53	-2.8
1,173,939	+		EFB2_01122	0.53	-1.2
1,173,939	+		EFB2_01122	0.53	+1.9
1,173,940	-		EFB2_01122	0.53	+0.4
1,173,940	-		EFB2_01122	0.53	+0.4
1,173,940	-		EFB2_01122	0.53	+1.1
1,173,945	+		EFB2_01122	0.54	+0.3
1,173,945	+		EFB2_01122	0.54	+0.0
1,173,946	-		EFB2_01122	0.54	-1.4
1,173,962	+		EFB2_01122	0.55	-2.6
1,173,963	-		EFB2_01122	0.55	+1.4
1,174,038	+		EFB2_01122	0.60	-1.6
1,174,039	-		EFB2_01122	0.60	-0.1
1,174,082	+		EFB2_01122	0.64	-1.6
1,174,082	+		EFB2_01122	0.64	-0.5
1,174,082	+		EFB2_01122	0.64	+0.5
1,174,082	+		EFB2_01122	0.64	+0.3
1,174,082	+		EFB2_01122	0.64	-1.7
1,174,082	+		EFB2_01122	0.64	-0.8
1,174,082	+		EFB2_01122	0.64	-3.9
1,174,082	+		EFB2_01122	0.64	+1.1
1,174,082	+		EFB2_01122	0.64	+0.8
1,174,082	+		EFB2_01122	0.64	+0.2
1,174,082	+		EFB2_01122	0.64	-0.5
1,174,083	-		EFB2_01122	0.64	+0.6
1,174,083	-		EFB2_01122	0.64	+0.8
1,174,083	-		EFB2_01122	0.64	-3.4
1,174,083	-		EFB2_01122	0.64	+0.7
1,174,088	+		EFB2_01122	0.64	-2.3
1,174,088	+		EFB2_01122	0.64	-1.6
1,174,088	+		EFB2_01122	0.64	-0.2
1,174,088	+		EFB2_01122	0.64	+2.0
1,174,088	+		EFB2_01122	0.64	-0.2
1,174,089	-		EFB2_01122	0.64	-0.8
1,174,089	-		EFB2_01122	0.64	-0.3
1,174,089	-		EFB2_01122	0.64	-1.7
1,174,089	-		EFB2_01122	0.64	+1.6
1,174,131	+		EFB2_01122	0.67	+0.7
1,174,131	+		EFB2_01122	0.67	-3.1
1,174,131	+		EFB2_01122	0.67	+0.5
1,174,131	+		EFB2_01122	0.67	-0.1
1,174,131	+		EFB2_01122	0.67	-2.6
1,174,131	+		EFB2_01122	0.67	-1.1
1,174,131	+		EFB2_01122	0.67	-1.1
1,174,131	+		EFB2_01122	0.67	-0.7
1,174,131	+		EFB2_01122	0.67	+0.8
1,174,131	+		EFB2_01122	0.67	+0.3
1,174,132	-		EFB2_01122	0.67	-0.5
1,174,132	-		EFB2_01122	0.67	-0.5
1,174,132	-		EFB2_01122	0.67	+0.7
1,174,132	-		EFB2_01122	0.67	-1.8
1,174,132	-		EFB2_01122	0.67	+0.6
1,174,132	-		EFB2_01122	0.67	-0.3
1,174,132	-		EFB2_01122	0.67	-1.5
1,174,132	-		EFB2_01122	0.67	-3.1
1,174,132	-		EFB2_01122	0.67	-4.2
1,174,132	-		EFB2_01122	0.67	-0.6
1,174,132	-		EFB2_01122	0.67	+0.0
1,174,132	-		EFB2_01122	0.67	+1.7
1,174,132	-		EFB2_01122	0.67	-1.3
1,174,191	+		EFB2_01122	0.72	-1.9
1,174,192	-		EFB2_01122	0.72	-3.7
1,174,256	+		EFB2_01122	0.76	+0.8
1,174,257	-		EFB2_01122	0.76	-1.4
1,174,312	-		EFB2_01122	0.80	+0.5
1,174,312	-		EFB2_01122	0.80	+3.2
1,174,348	+		EFB2_01122	0.83	-2.2
1,174,348	+		EFB2_01122	0.83	+1.0
1,174,348	+		EFB2_01122	0.83	-0.2
1,174,348	+		EFB2_01122	0.83	-2.3
1,174,349	-		EFB2_01122	0.83	-0.0
1,174,349	-		EFB2_01122	0.83	-0.1
1,174,349	-		EFB2_01122	0.83	+1.9
1,174,363	+		EFB2_01122	0.84	-3.3
1,174,389	+		EFB2_01122	0.86	-0.1
1,174,389	+		EFB2_01122	0.86	+0.9
1,174,389	+		EFB2_01122	0.86	+0.8
1,174,389	+		EFB2_01122	0.86	+0.6
1,174,389	+		EFB2_01122	0.86	+0.2
1,174,389	+		EFB2_01122	0.86	+1.3
1,174,390	-		EFB2_01122	0.86	-1.2
1,174,390	-		EFB2_01122	0.86	-0.6
1,174,390	-		EFB2_01122	0.86	-0.0
1,174,390	-		EFB2_01122	0.86	-0.1
1,174,390	-		EFB2_01122	0.86	+1.0
1,174,443	+				-0.7
1,174,444	-				-2.2
1,174,456	+				-1.0
1,174,487	+				-0.5
1,174,487	+				+0.5
1,174,487	+				-0.5
1,174,487	+				-1.8
1,174,488	-				-1.8
1,174,488	-				-1.6
1,174,488	-				-1.0
1,174,488	-				-0.1
1,174,513	-				-0.3
1,174,519	-				+0.1
1,174,542	+				+1.6
1,174,542	+				+0.6
1,174,542	+				-0.8
1,174,542	+				+1.0
1,174,542	+				+0.1
1,174,542	+				+0.4
1,174,542	+				-0.4
1,174,542	+				+0.8
1,174,542	+				+0.6
1,174,542	+				+0.4
1,174,542	+				+0.9
1,174,542	+				-1.2
1,174,542	+				+0.9
1,174,542	+				+0.3
1,174,542	+				-0.4
1,174,543	-				-0.2
1,174,543	-				+1.0
1,174,543	-				+1.4
1,174,543	-				-0.4
1,174,543	-				-0.8
1,174,543	-				-0.9
1,174,543	-				-0.1
1,174,543	-				-2.5
1,174,543	-				+0.8
1,174,543	-				-0.8
1,174,543	-				-2.1
1,174,543	-				+1.1
1,174,543	-				-3.4
1,174,543	-				+0.7
1,174,543	-				+0.6
1,174,543	-				-0.3
1,174,543	-				+1.2
1,174,543	-				-0.8
1,174,543	-				-0.4
1,174,543	-				-1.3
1,174,543	-				+0.4
1,174,543	-				-1.5
1,174,543	-				-0.9
1,174,543	-				-0.3
1,174,543	-				+0.3
1,174,543	-				-1.6
1,174,543	-				+0.4
1,174,543	-				-2.9
1,174,543	-				-1.1
1,174,563	+				-2.8
1,174,566	+				-0.0
1,174,566	+				+1.1
1,174,566	+				+0.2
1,174,566	+				-0.3
1,174,566	+				+0.3
1,174,566	+				+1.7
1,174,566	+				+0.3
1,174,566	+				+0.4
1,174,566	+				+0.8
1,174,566	+				+1.3
1,174,566	+				-1.0
1,174,566	+				-0.0
1,174,566	+				+1.2
1,174,566	+				-0.3
1,174,566	+				-0.5
1,174,566	+				+0.2
1,174,566	+				+1.3
1,174,566	+				+0.3
1,174,566	+				-0.6
1,174,566	+				+0.4
1,174,566	+				-1.2
1,174,566	+				+1.5
1,174,566	+				-3.1
1,174,566	+				-0.2
1,174,566	+				-0.6
1,174,566	+				-2.5
1,174,566	+				+1.0
1,174,567	-				+0.6
1,174,567	-				+0.5
1,174,567	-				-0.9
1,174,567	-				-0.5
1,174,567	-				-0.5
1,174,567	-				-0.4
1,174,567	-				+0.2
1,174,567	-				+1.1
1,174,567	-				-0.6
1,174,567	-				+0.0
1,174,567	-				-0.2
1,174,567	-				+1.9
1,174,567	-				-2.6
1,174,567	-				+0.7
1,174,567	-				+0.5
1,174,567	-				+1.5
1,174,567	-				-0.5
1,174,567	-				+0.1
1,174,567	-				-1.3
1,174,567	-				-3.3
1,174,567	-				+0.1
1,174,567	-				+0.3
1,174,567	-				-0.6
1,174,567	-				+0.1
1,174,567	-				+0.3
1,174,567	-				+0.8
1,174,572	+				+0.2
1,174,572	+				-1.2
1,174,572	+				-0.9
1,174,572	+				-0.9
1,174,573	-				-0.1
1,174,573	-				+1.9
1,174,573	-				-0.5
1,174,602	-				-1.5
1,174,602	-				+0.5
1,174,620	+				-1.3
1,174,620	+				+0.4
1,174,620	+				+1.8
1,174,620	+				+1.6
1,174,620	+				+0.7
1,174,620	+				-0.4
1,174,621	-				-1.9
1,174,621	-				-0.2
1,174,626	-				-0.8
1,174,626	-				-2.3
1,174,626	-				+2.7
1,174,692	-				-0.6
1,174,734	+				+0.7
1,174,734	+				+0.4
1,174,734	+				+0.6
1,174,734	+				-0.9
1,174,735	-				+0.5
1,174,735	-				+0.1
1,174,735	-				-0.8
1,174,750	-				-3.6
1,174,750	-				+1.9
1,174,773	+				+0.1
1,174,773	+				+0.6
1,174,773	+				+0.4
1,174,773	+				+0.1
1,174,774	-				+0.1
1,174,774	-				-0.8
1,174,774	-				+1.7
1,174,775	+		EFB2_01123	0.10	-1.7
1,174,775	+		EFB2_01123	0.10	-1.8
1,174,775	+		EFB2_01123	0.10	-1.6
1,174,775	+		EFB2_01123	0.10	+0.0
1,174,775	+		EFB2_01123	0.10	-1.2
1,174,775	+		EFB2_01123	0.10	+0.8
1,174,775	+		EFB2_01123	0.10	+0.4
1,174,775	+		EFB2_01123	0.10	-1.6
1,174,775	+		EFB2_01123	0.10	+0.2
1,174,776	-		EFB2_01123	0.10	+0.6
1,174,776	-		EFB2_01123	0.10	-2.4
1,174,776	-		EFB2_01123	0.10	-0.8
1,174,776	-		EFB2_01123	0.10	-0.1
1,174,776	-		EFB2_01123	0.10	+0.3
1,174,776	-		EFB2_01123	0.10	+2.1
1,174,776	-		EFB2_01123	0.10	-3.0
1,174,776	-		EFB2_01123	0.10	-0.7
1,174,776	-		EFB2_01123	0.10	-2.0
1,174,784	+		EFB2_01123	0.11	-1.8
1,174,784	+		EFB2_01123	0.11	-0.6
1,174,784	+		EFB2_01123	0.11	+0.8
1,174,784	+		EFB2_01123	0.11	+0.3
1,174,785	-		EFB2_01123	0.11	-1.1
1,174,816	+		EFB2_01123	0.15	-0.8
1,174,817	-		EFB2_01123	0.15	+0.8
1,174,817	-		EFB2_01123	0.15	-0.6
1,174,817	-		EFB2_01123	0.15	-2.1
1,174,827	+		EFB2_01123	0.16	-0.8
1,174,925	+		EFB2_01123	0.28	+0.2
1,175,042	+		EFB2_01123	0.41	+0.1
1,175,042	+		EFB2_01123	0.41	+0.9
1,175,043	-		EFB2_01123	0.42	-0.5
1,175,043	-		EFB2_01123	0.42	+0.2
1,175,049	+		EFB2_01123	0.42	+0.0
1,175,057	+		EFB2_01123	0.43	+0.4
1,175,060	+		EFB2_01123	0.44	+0.7
1,175,060	+		EFB2_01123	0.44	-0.5
1,175,060	+		EFB2_01123	0.44	+0.7
1,175,060	+		EFB2_01123	0.44	-0.6
1,175,060	+		EFB2_01123	0.44	-2.5
1,175,060	+		EFB2_01123	0.44	-1.1
1,175,060	+		EFB2_01123	0.44	-0.3
1,175,060	+		EFB2_01123	0.44	-0.6
1,175,060	+		EFB2_01123	0.44	+3.2
1,175,060	+		EFB2_01123	0.44	-1.7
1,175,060	+		EFB2_01123	0.44	-0.6
1,175,060	+		EFB2_01123	0.44	-0.1
1,175,060	+		EFB2_01123	0.44	-3.0
1,175,060	+		EFB2_01123	0.44	+0.6
1,175,060	+		EFB2_01123	0.44	-0.0
1,175,060	+		EFB2_01123	0.44	+3.9
1,175,060	+		EFB2_01123	0.44	+0.2
1,175,060	+		EFB2_01123	0.44	-0.7
1,175,061	-		EFB2_01123	0.44	+0.7
1,175,061	-		EFB2_01123	0.44	-1.9
1,175,061	-		EFB2_01123	0.44	+0.4
1,175,061	-		EFB2_01123	0.44	-1.7
1,175,061	-		EFB2_01123	0.44	+0.7
1,175,061	-		EFB2_01123	0.44	-1.9
1,175,061	-		EFB2_01123	0.44	+0.2
1,175,061	-		EFB2_01123	0.44	-0.8
1,175,061	-		EFB2_01123	0.44	-3.3
1,175,061	-		EFB2_01123	0.44	-0.3
1,175,061	-		EFB2_01123	0.44	-1.5
1,175,061	-		EFB2_01123	0.44	-0.5
1,175,061	-		EFB2_01123	0.44	+0.4
1,175,064	+		EFB2_01123	0.44	-0.1
1,175,064	+		EFB2_01123	0.44	+0.0
1,175,065	-		EFB2_01123	0.44	+0.9
1,175,065	-		EFB2_01123	0.44	+0.9
1,175,070	+		EFB2_01123	0.45	-0.6
1,175,076	+		EFB2_01123	0.45	-0.5
1,175,113	+		EFB2_01123	0.50	-2.0
1,175,114	-		EFB2_01123	0.50	-0.5
1,175,114	-		EFB2_01123	0.50	-0.1
1,175,114	-		EFB2_01123	0.50	-3.1
1,175,114	-		EFB2_01123	0.50	-1.0
1,175,144	+		EFB2_01123	0.53	-2.3
1,175,144	+		EFB2_01123	0.53	-2.8
1,175,144	+		EFB2_01123	0.53	-1.2
1,175,144	+		EFB2_01123	0.53	+0.7
1,175,144	+		EFB2_01123	0.53	-1.2
1,175,144	+		EFB2_01123	0.53	+1.7
1,175,144	+		EFB2_01123	0.53	-0.6
1,175,144	+		EFB2_01123	0.53	-2.9
1,175,144	+		EFB2_01123	0.53	+2.0
1,175,144	+		EFB2_01123	0.53	+1.0
1,175,144	+		EFB2_01123	0.53	-0.3
1,175,145	-		EFB2_01123	0.54	-0.7
1,175,145	-		EFB2_01123	0.54	+1.2
1,175,145	-		EFB2_01123	0.54	+0.6
1,175,145	-		EFB2_01123	0.54	-0.6
1,175,145	-		EFB2_01123	0.54	-3.0
1,175,145	-		EFB2_01123	0.54	+0.4
1,175,146	+		EFB2_01123	0.54	-1.5
1,175,146	+		EFB2_01123	0.54	+0.9
1,175,146	+		EFB2_01123	0.54	-2.0
1,175,146	+		EFB2_01123	0.54	+0.2
1,175,146	+		EFB2_01123	0.54	+0.1
1,175,146	+		EFB2_01123	0.54	-0.7
1,175,147	-		EFB2_01123	0.54	+1.1
1,175,147	-		EFB2_01123	0.54	+0.5
1,175,147	-		EFB2_01123	0.54	+1.8
1,175,147	-		EFB2_01123	0.54	+0.3
1,175,147	-		EFB2_01123	0.54	+1.0
1,175,147	-		EFB2_01123	0.54	+0.2
1,175,147	-		EFB2_01123	0.54	+0.0
1,175,147	-		EFB2_01123	0.54	-0.6
1,175,147	-		EFB2_01123	0.54	+0.1
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