Strain Fitness in Escherichia fergusonii Becca around EFB2_01095

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
1,146,090	-				+1.6
1,146,090	-				-1.0
1,146,090	-				+0.4
1,146,144	+				+0.5
1,146,145	-				-1.0
1,146,215	+				-0.1
1,146,216	-				-0.4
1,146,216	-				+0.6
1,146,216	-				-0.3
1,146,216	-				+0.2
1,146,216	-				+0.1
1,146,216	-				+0.8
1,146,276	+				+0.2
1,146,276	+				-0.0
1,146,276	+				-0.3
1,146,277	-				+0.5
1,146,277	-				-0.3
1,146,277	-				-0.6
1,146,277	-				-1.8
1,146,283	+				+0.9
1,146,322	+				+3.0
1,146,322	+				-1.5
1,146,322	+				+0.2
1,146,322	+				+1.1
1,146,322	+				+0.1
1,146,322	+				+0.3
1,146,322	+				+0.0
1,146,322	+				-1.8
1,146,322	+				-0.2
1,146,322	+				-0.7
1,146,323	-				-1.5
1,146,323	-				-2.0
1,146,323	-				-0.6
1,146,323	-				-0.5
1,146,323	-				+0.1
1,146,348	+				+0.2
1,146,349	-				-0.9
1,146,349	-				-2.8
1,146,349	-				-1.0
1,146,431	+				-0.9
1,146,446	-				+0.7
1,146,512	+				-0.8
1,146,512	+				-1.6
1,146,512	+				+1.4
1,146,513	-				-0.1
1,146,513	-				-0.2
1,146,513	-				-0.9
1,146,569	+		EFB2_01094	0.11	+0.4
1,146,569	+		EFB2_01094	0.11	+0.8
1,146,569	+		EFB2_01094	0.11	+0.7
1,146,570	-		EFB2_01094	0.11	+0.3
1,146,570	-		EFB2_01094	0.11	-1.3
1,146,570	-		EFB2_01094	0.11	+0.4
1,146,570	-		EFB2_01094	0.11	+1.0
1,146,618	+		EFB2_01094	0.21	+1.3
1,146,618	+		EFB2_01094	0.21	+0.1
1,146,619	-		EFB2_01094	0.21	+1.5
1,146,619	-		EFB2_01094	0.21	-1.4
1,146,619	-		EFB2_01094	0.21	-0.9
1,146,619	-		EFB2_01094	0.21	+0.1
1,146,619	-		EFB2_01094	0.21	+0.8
1,146,619	-		EFB2_01094	0.21	-0.4
1,146,630	+		EFB2_01094	0.24	+1.7
1,146,664	+		EFB2_01094	0.30	+2.4
1,146,664	+		EFB2_01094	0.30	-1.2
1,146,664	+		EFB2_01094	0.30	+0.6
1,146,664	+		EFB2_01094	0.30	-0.1
1,146,664	+		EFB2_01094	0.30	+1.2
1,146,665	-		EFB2_01094	0.31	-2.9
1,146,665	-		EFB2_01094	0.31	-3.2
1,146,665	-		EFB2_01094	0.31	-0.2
1,146,665	-		EFB2_01094	0.31	+0.2
1,146,665	-		EFB2_01094	0.31	-1.3
1,146,665	-		EFB2_01094	0.31	-1.0
1,146,665	-		EFB2_01094	0.31	-0.1
1,146,684	+		EFB2_01094	0.35	+1.2
1,146,696	+		EFB2_01094	0.37	-0.9
1,146,697	-		EFB2_01094	0.37	-1.9
1,146,704	+		EFB2_01094	0.39	-0.8
1,146,704	+		EFB2_01094	0.39	+0.7
1,146,704	+		EFB2_01094	0.39	+1.0
1,146,704	+		EFB2_01094	0.39	+0.0
1,146,705	-		EFB2_01094	0.39	-0.8
1,146,705	-		EFB2_01094	0.39	-3.4
1,146,705	-		EFB2_01094	0.39	+1.0
1,146,738	-		EFB2_01094	0.46	-1.0
1,146,744	+		EFB2_01094	0.47	-0.8
1,146,744	+		EFB2_01094	0.47	+1.0
1,146,788	+		EFB2_01094	0.56	+0.1
1,146,788	+		EFB2_01094	0.56	+0.1
1,146,788	+		EFB2_01094	0.56	+0.3
1,146,788	+		EFB2_01094	0.56	-2.9
1,146,788	+		EFB2_01094	0.56	+0.4
1,146,789	-		EFB2_01094	0.56	+1.4
1,146,789	-		EFB2_01094	0.56	+0.7
1,146,794	+		EFB2_01094	0.57	-0.4
1,146,795	-		EFB2_01094	0.57	+1.4
1,146,795	-		EFB2_01094	0.57	-0.4
1,146,795	-		EFB2_01094	0.57	-2.3
1,146,795	-		EFB2_01094	0.57	-1.6
1,146,795	-		EFB2_01094	0.57	-0.4
1,146,823	-		EFB2_01094	0.63	-0.3
1,146,828	+		EFB2_01094	0.64	+0.9
1,146,828	+		EFB2_01094	0.64	+0.8
1,146,829	-		EFB2_01094	0.64	-1.8
1,146,829	-		EFB2_01094	0.64	+0.2
1,146,829	-		EFB2_01094	0.64	-2.0
1,146,829	-		EFB2_01094	0.64	-0.4
1,146,844	-		EFB2_01094	0.67	-0.8
1,146,870	+		EFB2_01094	0.72	-2.9
1,146,870	+		EFB2_01094	0.72	+0.0
1,146,870	+		EFB2_01094	0.72	+0.2
1,146,870	+		EFB2_01094	0.72	-0.3
1,146,870	+		EFB2_01094	0.72	+0.6
1,146,871	-		EFB2_01094	0.73	-0.7
1,146,871	-		EFB2_01094	0.73	-2.0
1,146,871	-		EFB2_01094	0.73	-0.6
1,146,871	-		EFB2_01094	0.73	-0.6
1,146,871	-		EFB2_01094	0.73	+0.3
1,146,887	+		EFB2_01094	0.76	+0.2
1,146,887	+		EFB2_01094	0.76	-2.4
1,146,887	+		EFB2_01094	0.76	-3.0
1,146,887	+		EFB2_01094	0.76	-0.7
1,146,887	+		EFB2_01094	0.76	+0.5
1,146,887	+		EFB2_01094	0.76	-0.9
1,146,887	+		EFB2_01094	0.76	-0.6
1,146,887	+		EFB2_01094	0.76	-0.9
1,146,887	+		EFB2_01094	0.76	+0.7
1,146,887	+		EFB2_01094	0.76	+0.4
1,146,887	+		EFB2_01094	0.76	-2.2
1,146,887	+		EFB2_01094	0.76	+0.6
1,146,887	+		EFB2_01094	0.76	+0.3
1,146,888	-		EFB2_01094	0.76	-1.1
1,146,888	-		EFB2_01094	0.76	-3.2
1,146,888	-		EFB2_01094	0.76	-0.3
1,146,888	-		EFB2_01094	0.76	+1.6
1,146,888	-		EFB2_01094	0.76	-2.6
1,146,888	-		EFB2_01094	0.76	+0.0
1,146,888	-		EFB2_01094	0.76	-2.3
1,146,888	-		EFB2_01094	0.76	+0.6
1,146,888	-		EFB2_01094	0.76	-2.0
1,146,888	-		EFB2_01094	0.76	+0.1
1,146,888	-		EFB2_01094	0.76	-1.1
1,146,888	-		EFB2_01094	0.76	+0.2
1,146,888	-		EFB2_01094	0.76	-0.6
1,146,888	-		EFB2_01094	0.76	+1.0
1,146,888	-		EFB2_01094	0.76	+0.9
1,146,888	-		EFB2_01094	0.76	-0.4
1,146,888	-		EFB2_01094	0.76	+0.6
1,146,888	-		EFB2_01094	0.76	+1.2
1,146,888	-		EFB2_01094	0.76	-0.4
1,146,888	-		EFB2_01094	0.76	-0.4
1,146,888	-		EFB2_01094	0.76	-0.2
1,146,921	+		EFB2_01094	0.83	+0.9
1,146,922	-		EFB2_01094	0.83	-0.9
1,146,922	-		EFB2_01094	0.83	-0.8
1,146,989	+				-0.2
1,146,989	+				-0.8
1,146,989	+				-2.7
1,146,989	+				+0.0
1,146,989	+				+0.2
1,146,989	+				+2.7
1,146,989	+				+0.3
1,146,989	+				+0.3
1,146,990	-				+0.2
1,146,990	-				+0.4
1,146,990	-				-1.5
1,146,990	-				+0.3
1,146,990	-				+2.4
1,146,990	-				-0.3
1,146,999	+				-0.6
1,147,000	-				+0.4
1,147,000	-				-0.7
1,147,000	-				+0.1
1,147,000	-				+0.3
1,147,012	+				-2.8
1,147,012	+				+1.7
1,147,012	+				-0.2
1,147,012	+				-0.1
1,147,012	+				+1.5
1,147,012	+				+0.4
1,147,013	-				-1.2
1,147,013	-				+0.2
1,147,013	-				-0.3
1,147,024	+				-0.2
1,147,024	+				-1.3
1,147,024	+				-1.7
1,147,025	-				-0.8
1,147,057	+				+0.4
1,147,058	-				-3.4
1,147,058	-				+1.9
1,147,064	+				-0.3
1,147,064	+				-2.0
1,147,064	+				+1.2
1,147,064	+				+0.1
1,147,064	+				-1.7
1,147,064	+				+1.2
1,147,065	-				+0.7
1,147,065	-				-0.9
1,147,184	-		EFB2_01095	0.14	-1.1
1,147,184	-		EFB2_01095	0.14	+0.1
1,147,296	+		EFB2_01095	0.26	+1.5
1,147,296	+		EFB2_01095	0.26	+1.4
1,147,296	+		EFB2_01095	0.26	+1.0
1,147,296	+		EFB2_01095	0.26	+3.3
1,147,296	+		EFB2_01095	0.26	-1.1
1,147,296	+		EFB2_01095	0.26	-2.1
1,147,296	+		EFB2_01095	0.26	-0.4
1,147,297	-		EFB2_01095	0.26	+0.1
1,147,297	-		EFB2_01095	0.26	+0.2
1,147,297	-		EFB2_01095	0.26	-2.6
1,147,297	-		EFB2_01095	0.26	+0.9
1,147,413	+		EFB2_01095	0.39	-1.3
1,147,413	+		EFB2_01095	0.39	-1.5
1,147,413	+		EFB2_01095	0.39	-1.6
1,147,413	+		EFB2_01095	0.39	-0.3
1,147,413	+		EFB2_01095	0.39	-1.0
1,147,413	+		EFB2_01095	0.39	-3.3
1,147,413	+		EFB2_01095	0.39	-0.9
1,147,413	+		EFB2_01095	0.39	-0.2
1,147,413	+		EFB2_01095	0.39	-3.3
1,147,413	+		EFB2_01095	0.39	+1.0
1,147,413	+		EFB2_01095	0.39	-0.3
1,147,413	+		EFB2_01095	0.39	-0.0
1,147,413	+		EFB2_01095	0.39	-2.3
1,147,413	+		EFB2_01095	0.39	+0.7
1,147,413	+		EFB2_01095	0.39	-1.0
1,147,413	+		EFB2_01095	0.39	-0.6
1,147,413	+		EFB2_01095	0.39	+0.4
1,147,413	+		EFB2_01095	0.39	+3.9
1,147,413	+		EFB2_01095	0.39	-1.8
1,147,413	+		EFB2_01095	0.39	+0.9
1,147,413	+		EFB2_01095	0.39	+0.4
1,147,414	-		EFB2_01095	0.40	-1.0
1,147,414	-		EFB2_01095	0.40	+0.0
1,147,414	-		EFB2_01095	0.40	+1.4
1,147,414	-		EFB2_01095	0.40	+0.4
1,147,414	-		EFB2_01095	0.40	-0.4
1,147,414	-		EFB2_01095	0.40	-1.3
1,147,414	-		EFB2_01095	0.40	-2.5
1,147,414	-		EFB2_01095	0.40	+0.6
1,147,414	-		EFB2_01095	0.40	+0.7
1,147,414	-		EFB2_01095	0.40	+1.5
1,147,414	-		EFB2_01095	0.40	+0.6
1,147,414	-		EFB2_01095	0.40	-2.5
1,147,414	-		EFB2_01095	0.40	-1.3
1,147,414	-		EFB2_01095	0.40	-2.2
1,147,414	-		EFB2_01095	0.40	-0.3
1,147,414	-		EFB2_01095	0.40	-1.1
1,147,414	-		EFB2_01095	0.40	+1.4
1,147,414	-		EFB2_01095	0.40	-1.1
1,147,414	-		EFB2_01095	0.40	+0.5
1,147,414	-		EFB2_01095	0.40	-0.2
1,147,414	-		EFB2_01095	0.40	+0.1
1,147,498	+		EFB2_01095	0.49	-3.1
1,147,499	-		EFB2_01095	0.49	-1.9
1,147,499	-		EFB2_01095	0.49	-1.3
1,147,499	-		EFB2_01095	0.49	-0.5
1,147,501	+		EFB2_01095	0.49	-2.5
1,147,501	+		EFB2_01095	0.49	+0.2
1,147,501	+		EFB2_01095	0.49	-1.2
1,147,501	+		EFB2_01095	0.49	+0.6
1,147,529	+		EFB2_01095	0.52	+1.5
1,147,529	+		EFB2_01095	0.52	-0.0
1,147,529	+		EFB2_01095	0.52	-2.7
1,147,529	+		EFB2_01095	0.52	-1.0
1,147,530	-		EFB2_01095	0.53	-2.6
1,147,530	-		EFB2_01095	0.53	+0.7
1,147,530	-		EFB2_01095	0.53	+0.8
1,147,530	-		EFB2_01095	0.53	+1.0
1,147,531	+		EFB2_01095	0.53	-2.0
1,147,531	+		EFB2_01095	0.53	-0.4
1,147,531	+		EFB2_01095	0.53	-0.1
1,147,531	+		EFB2_01095	0.53	-0.4
1,147,532	-		EFB2_01095	0.53	-2.4
1,147,532	-		EFB2_01095	0.53	-1.0
1,147,532	-		EFB2_01095	0.53	-0.8
1,147,568	+		EFB2_01095	0.57	-0.3
1,147,569	-		EFB2_01095	0.57	+1.8
1,147,571	+		EFB2_01095	0.57	+2.4
1,147,571	+		EFB2_01095	0.57	-0.4
1,147,571	+		EFB2_01095	0.57	-0.2
1,147,572	-		EFB2_01095	0.57	-0.5
1,147,572	-		EFB2_01095	0.57	-0.7
1,147,572	-		EFB2_01095	0.57	-0.1
1,147,629	+		EFB2_01095	0.64	-1.4
1,147,629	+		EFB2_01095	0.64	-0.6
1,147,630	-		EFB2_01095	0.64	-0.4
1,147,652	+		EFB2_01095	0.66	-0.4
1,147,652	+		EFB2_01095	0.66	+0.9
1,147,653	-		EFB2_01095	0.66	-2.0
1,147,653	-		EFB2_01095	0.66	+0.8
1,147,653	-		EFB2_01095	0.66	-0.2
1,147,685	-		EFB2_01095	0.70	+0.5
1,147,687	+		EFB2_01095	0.70	+0.1
1,147,687	+		EFB2_01095	0.70	-1.2
1,147,687	+		EFB2_01095	0.70	+0.8
1,147,687	+		EFB2_01095	0.70	-0.5
1,147,687	+		EFB2_01095	0.70	-0.4
1,147,687	+		EFB2_01095	0.70	+0.4
1,147,688	-		EFB2_01095	0.70	-0.1
1,147,688	-		EFB2_01095	0.70	-1.3
1,147,688	-		EFB2_01095	0.70	-0.1
1,147,688	-		EFB2_01095	0.70	-2.1
1,147,688	-		EFB2_01095	0.70	-0.6
1,147,688	-		EFB2_01095	0.70	-0.3
1,147,978	+		EFB2_01096	0.11	-0.9
1,147,984	+		EFB2_01096	0.12	+0.2
1,147,984	+		EFB2_01096	0.12	-0.2
1,147,984	+		EFB2_01096	0.12	+1.0
1,147,984	+		EFB2_01096	0.12	+1.7
1,147,985	+		EFB2_01096	0.12	+0.1
1,147,985	-		EFB2_01096	0.12	+0.4
1,147,985	-		EFB2_01096	0.12	+1.6
1,147,985	-		EFB2_01096	0.12	+0.3
1,147,985	-		EFB2_01096	0.12	+1.3
1,148,086	+		EFB2_01096	0.27	+0.5
1,148,086	+		EFB2_01096	0.27	-0.8
1,148,086	+		EFB2_01096	0.27	+0.6
1,148,086	+		EFB2_01096	0.27	-0.2
1,148,086	+		EFB2_01096	0.27	+0.7
1,148,087	-		EFB2_01096	0.28	-1.3
1,148,138	+		EFB2_01096	0.36	+1.0
1,148,138	+		EFB2_01096	0.36	-0.1
1,148,138	+		EFB2_01096	0.36	+3.1
1,148,138	-		EFB2_01096	0.36	+0.3
1,148,139	-		EFB2_01096	0.36	-0.2
1,148,139	-		EFB2_01096	0.36	-1.7
1,148,139	-		EFB2_01096	0.36	+2.9
1,148,139	-		EFB2_01096	0.36	-0.4
1,148,139	-		EFB2_01096	0.36	+0.8
1,148,139	-		EFB2_01096	0.36	+0.2
1,148,139	-		EFB2_01096	0.36	-1.4
1,148,139	-		EFB2_01096	0.36	+0.8
1,148,155	+		EFB2_01096	0.38	-0.2
1,148,155	+		EFB2_01096	0.38	+1.1
1,148,155	+		EFB2_01096	0.38	+1.2
1,148,155	+		EFB2_01096	0.38	-0.2
1,148,155	+		EFB2_01096	0.38	-0.0
1,148,155	+		EFB2_01096	0.38	+2.1
1,148,155	+		EFB2_01096	0.38	-0.9
1,148,155	+		EFB2_01096	0.38	+0.7
1,148,155	+		EFB2_01096	0.38	-1.1
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1,148,157	+		EFB2_01096	0.38	-3.2
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1,148,158	-		EFB2_01096	0.39	-0.1
1,148,158	-		EFB2_01096	0.39	-2.1
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1,148,158	-		EFB2_01096	0.39	-0.6
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1,148,158	-		EFB2_01096	0.39	+0.5
1,148,158	-		EFB2_01096	0.39	+0.2
1,148,250	+		EFB2_01096	0.53	-1.1
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1,148,250	+		EFB2_01096	0.53	+0.8
1,148,250	+		EFB2_01096	0.53	+0.2
1,148,251	-		EFB2_01096	0.53	+3.8
1,148,251	-		EFB2_01096	0.53	+1.2
1,148,251	-		EFB2_01096	0.53	+0.0
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1,148,251	-		EFB2_01096	0.53	-1.3
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1,148,251	-		EFB2_01096	0.53	+0.5
1,148,251	-		EFB2_01096	0.53	+1.6
1,148,251	-		EFB2_01096	0.53	+0.2
1,148,251	-		EFB2_01096	0.53	+0.5
1,148,337	+		EFB2_01096	0.67	+0.1
1,148,337	+		EFB2_01096	0.67	+1.9
1,148,480	-		EFB2_01096	0.89	-0.2
1,148,504	+				+1.1
1,148,505	-				-0.1
1,148,600	+				-2.4
1,148,600	+				-0.0
1,148,601	-				-0.2
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1,148,619	-				-0.4
1,148,619	-				-0.7
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1,148,885	+		EFB2_01097	0.48	+1.0
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1,148,886	-		EFB2_01097	0.48	-1.6
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1,148,907	+		EFB2_01097	0.52	-1.3
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1,148,907	+		EFB2_01097	0.52	-2.5
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1,148,908	-		EFB2_01097	0.52	+0.2
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