Experiment: Locust bean gum 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05590 and BACOVA_05591 are separated by 57 nucleotides BACOVA_05591 and BACOVA_05592 overlap by 129 nucleotides BACOVA_05592 and BACOVA_05593 are separated by 193 nucleotides BACOVA_05593 and BACOVA_05594 overlap by 4 nucleotides BACOVA_05594 and BACOVA_05595 overlap by 14 nucleotides
BACOVA_05590: BACOVA_05590 - VirE N-terminal domain protein, at 1,106,738 to 1,108,855
_05590
BACOVA_05591: BACOVA_05591 - hypothetical protein, at 1,108,913 to 1,109,071
_05591
BACOVA_05592: BACOVA_05592 - hypothetical protein, at 1,108,943 to 1,109,173
_05592
BACOVA_05593: BACOVA_05593 - putative DNA-binding protein, at 1,109,367 to 1,109,870
_05593
BACOVA_05594: BACOVA_05594 - hypothetical protein, at 1,109,867 to 1,110,058
_05594
BACOVA_05595: BACOVA_05595 - N-acetylmuramoyl-L-alanine amidase, at 1,110,045 to 1,110,488
_05595
Position (kb)
1108
1109
1110 Strain fitness (log2 ratio)
-2
-1
0
1 at 1108.016 kb on - strand, within BACOVA_05590 at 1108.057 kb on - strand, within BACOVA_05590 at 1108.118 kb on - strand, within BACOVA_05590 at 1108.167 kb on + strand, within BACOVA_05590 at 1108.168 kb on - strand, within BACOVA_05590 at 1108.312 kb on - strand, within BACOVA_05590 at 1108.349 kb on - strand, within BACOVA_05590 at 1108.481 kb on + strand, within BACOVA_05590 at 1108.487 kb on + strand, within BACOVA_05590 at 1108.487 kb on + strand, within BACOVA_05590 at 1108.488 kb on - strand, within BACOVA_05590 at 1108.692 kb on - strand at 1108.945 kb on - strand at 1108.960 kb on - strand at 1108.964 kb on + strand at 1108.965 kb on - strand at 1109.110 kb on - strand, within BACOVA_05592 at 1109.226 kb on + strand at 1109.258 kb on - strand at 1109.363 kb on + strand at 1109.381 kb on - strand at 1109.386 kb on - strand at 1109.393 kb on - strand at 1109.439 kb on + strand, within BACOVA_05593 at 1109.553 kb on + strand, within BACOVA_05593 at 1109.735 kb on + strand, within BACOVA_05593 at 1109.740 kb on - strand, within BACOVA_05593 at 1109.750 kb on - strand, within BACOVA_05593 at 1109.871 kb on + strand at 1109.883 kb on + strand at 1109.884 kb on - strand at 1109.909 kb on - strand, within BACOVA_05594 at 1109.923 kb on - strand, within BACOVA_05594 at 1109.923 kb on - strand, within BACOVA_05594 at 1109.923 kb on - strand, within BACOVA_05594 at 1109.996 kb on - strand, within BACOVA_05594
Per-strain Table
Position Strand Gene LocusTag Fraction Locust bean gum 2.5 mg/mL (C) remove 1,108,016 - BACOVA_05590 0.60 -0.6 1,108,057 - BACOVA_05590 0.62 -0.9 1,108,118 - BACOVA_05590 0.65 -0.9 1,108,167 + BACOVA_05590 0.67 -0.8 1,108,168 - BACOVA_05590 0.68 +0.6 1,108,312 - BACOVA_05590 0.74 +0.7 1,108,349 - BACOVA_05590 0.76 -0.6 1,108,481 + BACOVA_05590 0.82 +0.2 1,108,487 + BACOVA_05590 0.83 -0.1 1,108,487 + BACOVA_05590 0.83 +0.3 1,108,488 - BACOVA_05590 0.83 -0.0 1,108,692 - +0.4 1,108,945 - -1.0 1,108,960 - +0.0 1,108,964 + -1.9 1,108,965 - +0.0 1,109,110 - BACOVA_05592 0.72 +0.5 1,109,226 + +1.1 1,109,258 - -0.9 1,109,363 + -0.9 1,109,381 - +0.1 1,109,386 - +0.6 1,109,393 - -0.7 1,109,439 + BACOVA_05593 0.14 -0.6 1,109,553 + BACOVA_05593 0.37 +0.8 1,109,735 + BACOVA_05593 0.73 +0.5 1,109,740 - BACOVA_05593 0.74 -1.9 1,109,750 - BACOVA_05593 0.76 -0.7 1,109,871 + -1.1 1,109,883 + +1.7 1,109,884 - -0.4 1,109,909 - BACOVA_05594 0.22 -0.2 1,109,923 - BACOVA_05594 0.29 +0.1 1,109,923 - BACOVA_05594 0.29 -0.1 1,109,923 - BACOVA_05594 0.29 +0.2 1,109,996 - BACOVA_05594 0.67 -0.6
Or see this region's nucleotide sequence