Experiment: Locust bean gum 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05150 and BACOVA_05151 are separated by 67 nucleotides BACOVA_05151 and BACOVA_05152 are separated by 34 nucleotides BACOVA_05152 and BACOVA_05153 are separated by 116 nucleotides
BACOVA_05150: BACOVA_05150 - sigma factor regulatory protein, FecR/PupR family, at 631,080 to 632,240
_05150
BACOVA_05151: BACOVA_05151 - RNA polymerase sigma-70 factor, at 632,308 to 632,862
_05151
BACOVA_05152: BACOVA_05152 - cyclic nucleotide-binding domain protein, at 632,897 to 633,598
_05152
BACOVA_05153: BACOVA_05153 - glutamate--ammonia ligase, catalytic domain protein, at 633,715 to 635,904
_05153
Position (kb) 632
633 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 631.339 kb on - strand, within BACOVA_05150 at 631.358 kb on + strand, within BACOVA_05150 at 631.370 kb on + strand, within BACOVA_05150 at 631.371 kb on - strand, within BACOVA_05150 at 631.375 kb on + strand, within BACOVA_05150 at 631.375 kb on + strand, within BACOVA_05150 at 631.376 kb on - strand, within BACOVA_05150 at 631.379 kb on + strand, within BACOVA_05150 at 631.379 kb on + strand, within BACOVA_05150 at 631.379 kb on + strand, within BACOVA_05150 at 631.380 kb on - strand, within BACOVA_05150 at 631.380 kb on - strand, within BACOVA_05150 at 631.380 kb on - strand, within BACOVA_05150 at 631.431 kb on + strand, within BACOVA_05150 at 631.446 kb on + strand, within BACOVA_05150 at 631.447 kb on - strand, within BACOVA_05150 at 631.463 kb on + strand, within BACOVA_05150 at 631.485 kb on + strand, within BACOVA_05150 at 631.520 kb on + strand, within BACOVA_05150 at 631.520 kb on + strand, within BACOVA_05150 at 631.520 kb on + strand, within BACOVA_05150 at 631.521 kb on - strand, within BACOVA_05150 at 631.521 kb on - strand, within BACOVA_05150 at 631.710 kb on + strand, within BACOVA_05150 at 631.773 kb on - strand, within BACOVA_05150 at 631.815 kb on - strand, within BACOVA_05150 at 631.916 kb on - strand, within BACOVA_05150 at 631.916 kb on - strand, within BACOVA_05150 at 631.916 kb on - strand, within BACOVA_05150 at 631.925 kb on - strand, within BACOVA_05150 at 631.936 kb on - strand, within BACOVA_05150 at 631.941 kb on + strand, within BACOVA_05150 at 631.948 kb on - strand, within BACOVA_05150 at 631.948 kb on - strand, within BACOVA_05150 at 631.964 kb on - strand, within BACOVA_05150 at 631.964 kb on - strand, within BACOVA_05150 at 632.024 kb on - strand, within BACOVA_05150 at 632.065 kb on - strand, within BACOVA_05150 at 632.084 kb on - strand, within BACOVA_05150 at 632.097 kb on + strand, within BACOVA_05150 at 632.113 kb on - strand, within BACOVA_05150 at 632.152 kb on + strand at 632.317 kb on + strand at 632.459 kb on + strand, within BACOVA_05151 at 632.460 kb on - strand, within BACOVA_05151 at 632.462 kb on - strand, within BACOVA_05151 at 632.557 kb on - strand, within BACOVA_05151 at 632.583 kb on - strand, within BACOVA_05151 at 632.608 kb on + strand, within BACOVA_05151 at 632.643 kb on - strand, within BACOVA_05151 at 632.707 kb on + strand, within BACOVA_05151 at 632.750 kb on + strand, within BACOVA_05151 at 632.776 kb on - strand, within BACOVA_05151 at 632.776 kb on - strand, within BACOVA_05151 at 632.780 kb on + strand, within BACOVA_05151 at 632.780 kb on + strand, within BACOVA_05151 at 632.781 kb on - strand, within BACOVA_05151 at 632.783 kb on + strand, within BACOVA_05151 at 632.784 kb on - strand, within BACOVA_05151 at 632.784 kb on - strand, within BACOVA_05151 at 632.794 kb on + strand, within BACOVA_05151 at 632.795 kb on - strand, within BACOVA_05151 at 632.828 kb on - strand at 632.840 kb on - strand at 632.850 kb on + strand at 632.854 kb on + strand at 632.854 kb on + strand at 632.854 kb on + strand at 632.855 kb on - strand at 632.855 kb on - strand at 632.855 kb on - strand at 632.855 kb on - strand at 632.855 kb on - strand at 632.867 kb on + strand at 632.898 kb on + strand at 633.226 kb on + strand, within BACOVA_05152 at 633.260 kb on - strand, within BACOVA_05152 at 633.483 kb on + strand, within BACOVA_05152 at 633.492 kb on - strand, within BACOVA_05152 at 633.542 kb on + strand at 633.619 kb on - strand at 633.667 kb on - strand at 633.738 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Locust bean gum 2.5 mg/mL (C) remove 631,339 - BACOVA_05150 0.22 -1.1 631,358 + BACOVA_05150 0.24 +0.5 631,370 + BACOVA_05150 0.25 +1.0 631,371 - BACOVA_05150 0.25 -0.0 631,375 + BACOVA_05150 0.25 +0.5 631,375 + BACOVA_05150 0.25 -0.7 631,376 - BACOVA_05150 0.25 -2.7 631,379 + BACOVA_05150 0.26 -0.5 631,379 + BACOVA_05150 0.26 -0.9 631,379 + BACOVA_05150 0.26 -0.2 631,380 - BACOVA_05150 0.26 -0.1 631,380 - BACOVA_05150 0.26 -1.2 631,380 - BACOVA_05150 0.26 -0.1 631,431 + BACOVA_05150 0.30 -1.2 631,446 + BACOVA_05150 0.32 -2.1 631,447 - BACOVA_05150 0.32 -0.5 631,463 + BACOVA_05150 0.33 +0.4 631,485 + BACOVA_05150 0.35 -0.1 631,520 + BACOVA_05150 0.38 +0.1 631,520 + BACOVA_05150 0.38 -1.0 631,520 + BACOVA_05150 0.38 -0.9 631,521 - BACOVA_05150 0.38 -0.1 631,521 - BACOVA_05150 0.38 -1.1 631,710 + BACOVA_05150 0.54 -1.7 631,773 - BACOVA_05150 0.60 -0.1 631,815 - BACOVA_05150 0.63 -1.3 631,916 - BACOVA_05150 0.72 -0.6 631,916 - BACOVA_05150 0.72 +0.6 631,916 - BACOVA_05150 0.72 -0.8 631,925 - BACOVA_05150 0.73 +0.9 631,936 - BACOVA_05150 0.74 -1.1 631,941 + BACOVA_05150 0.74 +0.1 631,948 - BACOVA_05150 0.75 -1.0 631,948 - BACOVA_05150 0.75 +1.1 631,964 - BACOVA_05150 0.76 -0.6 631,964 - BACOVA_05150 0.76 -1.6 632,024 - BACOVA_05150 0.81 +0.1 632,065 - BACOVA_05150 0.85 +0.4 632,084 - BACOVA_05150 0.86 -1.4 632,097 + BACOVA_05150 0.88 -0.7 632,113 - BACOVA_05150 0.89 +1.0 632,152 + -0.5 632,317 + +0.2 632,459 + BACOVA_05151 0.27 -0.0 632,460 - BACOVA_05151 0.27 -1.3 632,462 - BACOVA_05151 0.28 -0.1 632,557 - BACOVA_05151 0.45 -0.8 632,583 - BACOVA_05151 0.50 -0.1 632,608 + BACOVA_05151 0.54 -0.4 632,643 - BACOVA_05151 0.60 -0.3 632,707 + BACOVA_05151 0.72 -0.5 632,750 + BACOVA_05151 0.80 +0.3 632,776 - BACOVA_05151 0.84 -0.2 632,776 - BACOVA_05151 0.84 +0.5 632,780 + BACOVA_05151 0.85 -0.1 632,780 + BACOVA_05151 0.85 -0.1 632,781 - BACOVA_05151 0.85 -2.2 632,783 + BACOVA_05151 0.86 +0.4 632,784 - BACOVA_05151 0.86 -3.0 632,784 - BACOVA_05151 0.86 -0.1 632,794 + BACOVA_05151 0.88 -0.9 632,795 - BACOVA_05151 0.88 -0.1 632,828 - +0.6 632,840 - -0.1 632,850 + +0.6 632,854 + -0.4 632,854 + +2.3 632,854 + -0.3 632,855 - +1.7 632,855 - +0.9 632,855 - +1.4 632,855 - +0.2 632,855 - +0.2 632,867 + +1.1 632,898 + +1.0 633,226 + BACOVA_05152 0.47 -1.4 633,260 - BACOVA_05152 0.52 -0.3 633,483 + BACOVA_05152 0.83 -0.9 633,492 - BACOVA_05152 0.85 -1.9 633,542 + -1.6 633,619 - -2.1 633,667 - -3.0 633,738 + -1.4
Or see this region's nucleotide sequence