Experiment: Locust bean gum 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03836 and BACOVA_03837 are separated by 253 nucleotides BACOVA_03837 and BACOVA_03838 are separated by 0 nucleotides BACOVA_03838 and BACOVA_03839 are separated by 26 nucleotides
BACOVA_03836: BACOVA_03836 - transcriptional regulator, MarR family, at 186,373 to 186,813
_03836
BACOVA_03837: BACOVA_03837 - hypothetical protein, at 187,067 to 187,666
_03837
BACOVA_03838: BACOVA_03838 - hypothetical protein, at 187,667 to 187,963
_03838
BACOVA_03839: BACOVA_03839 - inner membrane protein CreD, at 187,990 to 189,342
_03839
Position (kb) 187
188 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 186.683 kb on - strand, within BACOVA_03836 at 186.683 kb on - strand, within BACOVA_03836 at 186.741 kb on + strand, within BACOVA_03836 at 186.741 kb on + strand, within BACOVA_03836 at 186.760 kb on - strand, within BACOVA_03836 at 186.818 kb on + strand at 186.818 kb on + strand at 186.819 kb on - strand at 186.913 kb on - strand at 186.915 kb on - strand at 186.927 kb on + strand at 186.928 kb on - strand at 187.000 kb on + strand at 187.072 kb on + strand at 187.144 kb on - strand, within BACOVA_03837 at 187.176 kb on - strand, within BACOVA_03837 at 187.193 kb on + strand, within BACOVA_03837 at 187.194 kb on - strand, within BACOVA_03837 at 187.194 kb on - strand, within BACOVA_03837 at 187.194 kb on - strand, within BACOVA_03837 at 187.202 kb on - strand, within BACOVA_03837 at 187.231 kb on - strand, within BACOVA_03837 at 187.231 kb on - strand, within BACOVA_03837 at 187.316 kb on - strand, within BACOVA_03837 at 187.433 kb on + strand, within BACOVA_03837 at 187.433 kb on + strand, within BACOVA_03837 at 187.464 kb on + strand, within BACOVA_03837 at 187.469 kb on + strand, within BACOVA_03837 at 187.477 kb on - strand, within BACOVA_03837 at 187.518 kb on + strand, within BACOVA_03837 at 187.518 kb on + strand, within BACOVA_03837 at 187.519 kb on - strand, within BACOVA_03837 at 187.519 kb on - strand, within BACOVA_03837 at 187.525 kb on - strand, within BACOVA_03837 at 187.525 kb on - strand, within BACOVA_03837 at 187.529 kb on + strand, within BACOVA_03837 at 187.530 kb on - strand, within BACOVA_03837 at 187.672 kb on - strand at 187.672 kb on - strand at 187.672 kb on - strand at 187.690 kb on + strand at 187.691 kb on - strand at 187.693 kb on + strand at 187.693 kb on + strand at 187.840 kb on + strand, within BACOVA_03838 at 187.840 kb on + strand, within BACOVA_03838 at 187.850 kb on - strand, within BACOVA_03838 at 187.927 kb on + strand, within BACOVA_03838 at 187.928 kb on - strand, within BACOVA_03838 at 187.990 kb on - strand at 188.037 kb on + strand at 188.037 kb on + strand at 188.038 kb on - strand at 188.091 kb on - strand at 188.170 kb on - strand, within BACOVA_03839 at 188.180 kb on + strand, within BACOVA_03839 at 188.222 kb on - strand, within BACOVA_03839 at 188.277 kb on + strand, within BACOVA_03839 at 188.278 kb on - strand, within BACOVA_03839 at 188.327 kb on + strand, within BACOVA_03839 at 188.328 kb on - strand, within BACOVA_03839 at 188.352 kb on + strand, within BACOVA_03839 at 188.369 kb on + strand, within BACOVA_03839 at 188.369 kb on + strand, within BACOVA_03839 at 188.570 kb on + strand, within BACOVA_03839 at 188.571 kb on - strand, within BACOVA_03839 at 188.571 kb on - strand, within BACOVA_03839 at 188.574 kb on + strand, within BACOVA_03839 at 188.622 kb on + strand, within BACOVA_03839 at 188.635 kb on + strand, within BACOVA_03839 at 188.635 kb on + strand, within BACOVA_03839 at 188.680 kb on - strand, within BACOVA_03839 at 188.692 kb on - strand, within BACOVA_03839 at 188.706 kb on - strand, within BACOVA_03839 at 188.749 kb on + strand, within BACOVA_03839 at 188.750 kb on - strand, within BACOVA_03839 at 188.757 kb on + strand, within BACOVA_03839 at 188.807 kb on + strand, within BACOVA_03839 at 188.824 kb on + strand, within BACOVA_03839 at 188.846 kb on - strand, within BACOVA_03839 at 188.918 kb on - strand, within BACOVA_03839 at 188.963 kb on + strand, within BACOVA_03839
Per-strain Table
Position Strand Gene LocusTag Fraction Locust bean gum 2.5 mg/mL (C) remove 186,683 - BACOVA_03836 0.70 -1.4 186,683 - BACOVA_03836 0.70 -0.5 186,741 + BACOVA_03836 0.83 +0.4 186,741 + BACOVA_03836 0.83 +0.9 186,760 - BACOVA_03836 0.88 -2.4 186,818 + +0.2 186,818 + +2.9 186,819 - +0.2 186,913 - -0.1 186,915 - -0.8 186,927 + -0.5 186,928 - +0.3 187,000 + +0.5 187,072 + -1.7 187,144 - BACOVA_03837 0.13 -0.2 187,176 - BACOVA_03837 0.18 -1.5 187,193 + BACOVA_03837 0.21 -0.2 187,194 - BACOVA_03837 0.21 +0.2 187,194 - BACOVA_03837 0.21 -1.1 187,194 - BACOVA_03837 0.21 +0.5 187,202 - BACOVA_03837 0.23 +0.5 187,231 - BACOVA_03837 0.27 -2.1 187,231 - BACOVA_03837 0.27 -1.7 187,316 - BACOVA_03837 0.41 -0.2 187,433 + BACOVA_03837 0.61 -0.3 187,433 + BACOVA_03837 0.61 -0.4 187,464 + BACOVA_03837 0.66 -0.6 187,469 + BACOVA_03837 0.67 -0.0 187,477 - BACOVA_03837 0.68 -0.6 187,518 + BACOVA_03837 0.75 +0.4 187,518 + BACOVA_03837 0.75 -0.1 187,519 - BACOVA_03837 0.75 -0.5 187,519 - BACOVA_03837 0.75 -0.7 187,525 - BACOVA_03837 0.76 -0.2 187,525 - BACOVA_03837 0.76 +0.1 187,529 + BACOVA_03837 0.77 -0.8 187,530 - BACOVA_03837 0.77 +1.9 187,672 - -0.4 187,672 - -2.0 187,672 - +0.6 187,690 + -0.4 187,691 - +0.8 187,693 + +1.3 187,693 + +1.2 187,840 + BACOVA_03838 0.58 -1.1 187,840 + BACOVA_03838 0.58 +0.5 187,850 - BACOVA_03838 0.62 -1.4 187,927 + BACOVA_03838 0.88 -1.2 187,928 - BACOVA_03838 0.88 -0.8 187,990 - +0.4 188,037 + -0.5 188,037 + -0.3 188,038 - -1.4 188,091 - -0.4 188,170 - BACOVA_03839 0.13 -0.5 188,180 + BACOVA_03839 0.14 +0.2 188,222 - BACOVA_03839 0.17 -0.1 188,277 + BACOVA_03839 0.21 +0.7 188,278 - BACOVA_03839 0.21 +0.1 188,327 + BACOVA_03839 0.25 -0.3 188,328 - BACOVA_03839 0.25 +0.2 188,352 + BACOVA_03839 0.27 +0.3 188,369 + BACOVA_03839 0.28 -1.5 188,369 + BACOVA_03839 0.28 -1.2 188,570 + BACOVA_03839 0.43 +0.4 188,571 - BACOVA_03839 0.43 -0.5 188,571 - BACOVA_03839 0.43 +0.3 188,574 + BACOVA_03839 0.43 +0.4 188,622 + BACOVA_03839 0.47 -1.8 188,635 + BACOVA_03839 0.48 -2.8 188,635 + BACOVA_03839 0.48 +0.0 188,680 - BACOVA_03839 0.51 +0.4 188,692 - BACOVA_03839 0.52 +0.4 188,706 - BACOVA_03839 0.53 +0.4 188,749 + BACOVA_03839 0.56 +0.8 188,750 - BACOVA_03839 0.56 -1.0 188,757 + BACOVA_03839 0.57 -0.4 188,807 + BACOVA_03839 0.60 +0.3 188,824 + BACOVA_03839 0.62 +0.8 188,846 - BACOVA_03839 0.63 +0.6 188,918 - BACOVA_03839 0.69 -0.4 188,963 + BACOVA_03839 0.72 -0.7
Or see this region's nucleotide sequence