Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01125

Experiment: L-Glutamine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_01123 and MPMX26_01124 are separated by 131 nucleotidesMPMX26_01124 and MPMX26_01125 are separated by 21 nucleotidesMPMX26_01125 and MPMX26_01126 are separated by 69 nucleotides MPMX26_01123: MPMX26_01123 - Protease HtpX, at 1,191,969 to 1,193,858 _01123 MPMX26_01124: MPMX26_01124 - hypothetical protein, at 1,193,990 to 1,194,664 _01124 MPMX26_01125: MPMX26_01125 - Glyoxylate/hydroxypyruvate reductase B, at 1,194,686 to 1,195,657 _01125 MPMX26_01126: MPMX26_01126 - Beta-barrel assembly-enhancing protease, at 1,195,727 to 1,197,181 _01126 Position (kb) 1194 1195 1196Strain fitness (log2 ratio) -2 -1 0 1 2at 1194.722 kb on + strandat 1194.803 kb on + strand, within MPMX26_01125at 1194.856 kb on + strand, within MPMX26_01125at 1194.856 kb on + strand, within MPMX26_01125at 1194.862 kb on + strand, within MPMX26_01125at 1194.979 kb on + strand, within MPMX26_01125at 1195.042 kb on + strand, within MPMX26_01125at 1195.042 kb on + strand, within MPMX26_01125at 1195.066 kb on + strand, within MPMX26_01125at 1195.069 kb on + strand, within MPMX26_01125at 1195.166 kb on + strand, within MPMX26_01125at 1195.222 kb on + strand, within MPMX26_01125at 1195.337 kb on + strand, within MPMX26_01125at 1195.369 kb on + strand, within MPMX26_01125at 1195.379 kb on + strand, within MPMX26_01125at 1195.416 kb on + strand, within MPMX26_01125at 1195.421 kb on + strand, within MPMX26_01125at 1195.426 kb on + strand, within MPMX26_01125at 1195.426 kb on + strand, within MPMX26_01125at 1195.505 kb on + strand, within MPMX26_01125at 1195.505 kb on + strand, within MPMX26_01125at 1195.505 kb on + strand, within MPMX26_01125at 1195.529 kb on + strand, within MPMX26_01125at 1195.589 kb on + strandat 1195.589 kb on + strandat 1195.589 kb on + strandat 1195.589 kb on + strandat 1195.606 kb on + strandat 1195.636 kb on + strandat 1195.636 kb on + strandat 1195.636 kb on + strandat 1195.636 kb on + strandat 1195.763 kb on + strandat 1195.763 kb on + strandat 1195.763 kb on + strandat 1195.763 kb on + strandat 1195.763 kb on + strandat 1195.846 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (N)
remove
1,194,722 + -0.4
1,194,803 + MPMX26_01125 0.12 -0.3
1,194,856 + MPMX26_01125 0.17 -0.2
1,194,856 + MPMX26_01125 0.17 -0.0
1,194,862 + MPMX26_01125 0.18 +0.6
1,194,979 + MPMX26_01125 0.30 +0.8
1,195,042 + MPMX26_01125 0.37 -0.2
1,195,042 + MPMX26_01125 0.37 -0.6
1,195,066 + MPMX26_01125 0.39 +0.6
1,195,069 + MPMX26_01125 0.39 +0.3
1,195,166 + MPMX26_01125 0.49 +0.1
1,195,222 + MPMX26_01125 0.55 +0.2
1,195,337 + MPMX26_01125 0.67 -0.5
1,195,369 + MPMX26_01125 0.70 -0.1
1,195,379 + MPMX26_01125 0.71 -1.2
1,195,416 + MPMX26_01125 0.75 -1.3
1,195,421 + MPMX26_01125 0.76 -0.5
1,195,426 + MPMX26_01125 0.76 -0.3
1,195,426 + MPMX26_01125 0.76 -1.8
1,195,505 + MPMX26_01125 0.84 -1.3
1,195,505 + MPMX26_01125 0.84 +0.0
1,195,505 + MPMX26_01125 0.84 +0.0
1,195,529 + MPMX26_01125 0.87 +0.5
1,195,589 + +0.1
1,195,589 + +0.6
1,195,589 + -0.6
1,195,589 + +0.6
1,195,606 + -0.4
1,195,636 + +0.1
1,195,636 + +2.5
1,195,636 + +0.6
1,195,636 + +0.1
1,195,763 + +0.3
1,195,763 + +0.1
1,195,763 + -0.0
1,195,763 + +0.6
1,195,763 + -0.4
1,195,846 + +0.4

Or see this region's nucleotide sequence