Strain Fitness in Escherichia fergusonii Becca around EFB2_04541

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
4,765,326	+		EFB2_04540	0.48	+0.6
4,765,326	+		EFB2_04540	0.48	+0.3
4,765,326	+		EFB2_04540	0.48	+0.1
4,765,326	+		EFB2_04540	0.48	+0.4
4,765,326	+		EFB2_04540	0.48	+0.4
4,765,326	+		EFB2_04540	0.48	-0.2
4,765,327	-		EFB2_04540	0.48	-1.3
4,765,327	-		EFB2_04540	0.48	-3.2
4,765,327	-		EFB2_04540	0.48	+0.2
4,765,340	+		EFB2_04540	0.49	-2.1
4,765,341	-		EFB2_04540	0.49	+0.1
4,765,429	-		EFB2_04540	0.55	-1.2
4,765,434	+		EFB2_04540	0.55	+0.3
4,765,434	+		EFB2_04540	0.55	+0.3
4,765,476	+		EFB2_04540	0.58	-1.1
4,765,476	+		EFB2_04540	0.58	-0.0
4,765,477	-		EFB2_04540	0.58	-2.0
4,765,491	+		EFB2_04540	0.59	+0.7
4,765,492	-		EFB2_04540	0.59	+1.0
4,765,531	+		EFB2_04540	0.62	+0.5
4,765,546	-		EFB2_04540	0.63	+0.2
4,765,546	-		EFB2_04540	0.63	-0.8
4,765,554	+		EFB2_04540	0.63	+0.4
4,765,554	+		EFB2_04540	0.63	-1.3
4,765,554	+		EFB2_04540	0.63	+0.1
4,765,554	+		EFB2_04540	0.63	+0.5
4,765,554	+		EFB2_04540	0.63	-2.3
4,765,554	+		EFB2_04540	0.63	-0.2
4,765,555	-		EFB2_04540	0.63	+0.1
4,765,555	-		EFB2_04540	0.63	+0.0
4,765,555	-		EFB2_04540	0.63	+0.5
4,765,555	-		EFB2_04540	0.63	+0.1
4,765,555	-		EFB2_04540	0.63	+1.5
4,765,555	-		EFB2_04540	0.63	+0.3
4,765,555	-		EFB2_04540	0.63	-0.1
4,765,555	-		EFB2_04540	0.63	+0.4
4,765,555	-		EFB2_04540	0.63	-0.8
4,765,555	-		EFB2_04540	0.63	+0.6
4,765,555	-		EFB2_04540	0.63	-3.4
4,765,579	-		EFB2_04540	0.65	-0.1
4,765,579	-		EFB2_04540	0.65	+1.5
4,765,579	-		EFB2_04540	0.65	-1.1
4,765,618	+		EFB2_04540	0.68	-1.1
4,765,618	+		EFB2_04540	0.68	-1.0
4,765,618	+		EFB2_04540	0.68	-0.4
4,765,619	-		EFB2_04540	0.68	+0.8
4,765,619	-		EFB2_04540	0.68	-0.9
4,765,662	+		EFB2_04540	0.71	+0.6
4,765,662	+		EFB2_04540	0.71	+0.8
4,765,662	+		EFB2_04540	0.71	+0.9
4,765,662	+		EFB2_04540	0.71	-0.1
4,765,663	-		EFB2_04540	0.71	-0.3
4,765,663	-		EFB2_04540	0.71	+0.2
4,765,663	-		EFB2_04540	0.71	+0.1
4,765,684	+		EFB2_04540	0.72	+0.1
4,765,684	+		EFB2_04540	0.72	-0.8
4,765,684	+		EFB2_04540	0.72	-0.4
4,765,684	+		EFB2_04540	0.72	+1.1
4,765,685	-		EFB2_04540	0.72	+0.2
4,765,695	+		EFB2_04540	0.73	-0.6
4,765,695	+		EFB2_04540	0.73	+0.9
4,765,695	+		EFB2_04540	0.73	+1.7
4,765,695	+		EFB2_04540	0.73	-0.7
4,765,695	+		EFB2_04540	0.73	+1.6
4,765,695	+		EFB2_04540	0.73	+2.4
4,765,695	+		EFB2_04540	0.73	-0.2
4,765,696	-		EFB2_04540	0.73	-2.3
4,765,696	-		EFB2_04540	0.73	-0.6
4,765,696	-		EFB2_04540	0.73	-2.0
4,765,696	-		EFB2_04540	0.73	-0.2
4,765,696	-		EFB2_04540	0.73	-2.0
4,765,696	-		EFB2_04540	0.73	-0.5
4,765,696	-		EFB2_04540	0.73	+0.1
4,765,696	-		EFB2_04540	0.73	-0.2
4,765,696	-		EFB2_04540	0.73	+0.1
4,765,696	-		EFB2_04540	0.73	+1.1
4,765,696	-		EFB2_04540	0.73	-0.8
4,765,696	-		EFB2_04540	0.73	+0.6
4,765,696	-		EFB2_04540	0.73	+0.9
4,765,696	-		EFB2_04540	0.73	+1.2
4,765,696	-		EFB2_04540	0.73	+1.0
4,765,696	-		EFB2_04540	0.73	+0.7
4,765,698	+		EFB2_04540	0.73	-0.7
4,765,698	+		EFB2_04540	0.73	-0.1
4,765,698	+		EFB2_04540	0.73	-1.0
4,765,698	+		EFB2_04540	0.73	+0.6
4,765,698	+		EFB2_04540	0.73	-0.6
4,765,698	+		EFB2_04540	0.73	-0.6
4,765,699	-		EFB2_04540	0.73	-1.2
4,765,699	-		EFB2_04540	0.73	+0.5
4,765,786	-		EFB2_04540	0.79	-1.5
4,765,786	-		EFB2_04540	0.79	-0.7
4,765,872	+		EFB2_04540	0.85	-0.7
4,765,873	-		EFB2_04540	0.85	-0.3
4,765,873	-		EFB2_04540	0.85	-1.4
4,765,878	+		EFB2_04540	0.85	+1.5
4,765,878	+		EFB2_04540	0.85	+0.3
4,765,879	-		EFB2_04540	0.85	-0.7
4,765,893	+		EFB2_04540	0.86	-2.2
4,765,893	+		EFB2_04540	0.86	-0.6
4,765,894	-		EFB2_04540	0.86	-0.3
4,765,894	-		EFB2_04540	0.86	+0.9
4,765,913	+		EFB2_04540	0.87	-2.4
4,765,914	-		EFB2_04540	0.87	-0.5
4,765,941	+		EFB2_04540	0.89	+0.9
4,765,942	-		EFB2_04540	0.89	+0.3
4,765,942	-		EFB2_04540	0.89	+2.3
4,765,968	+				+0.9
4,765,968	+				+3.1
4,765,969	-				+0.8
4,765,969	-				-0.1
4,765,969	-				+0.3
4,765,969	-				-0.1
4,765,993	-				+0.8
4,765,993	-				+1.0
4,766,013	+				+0.5
4,766,014	-				-0.3
4,766,016	+				+1.7
4,766,016	+				-2.7
4,766,017	-				+1.1
4,766,017	-				-2.1
4,766,017	-				-2.2
4,766,019	+				+0.7
4,766,019	+				+1.6
4,766,020	-				-0.4
4,766,020	-				+0.0
4,766,061	+				-1.7
4,766,103	+				+1.6
4,766,104	-				-0.5
4,766,104	-				-0.6
4,766,104	-				-2.2
4,766,142	-				+0.3
4,766,153	+				-2.5
4,766,153	+				-0.3
4,766,243	-				+0.7
4,766,243	-				-0.1
4,766,309	+				-1.8
4,766,309	+				+1.5
4,766,309	+				-3.0
4,766,316	+				+1.7
4,766,316	+				-2.4
4,766,317	-				-0.4
4,766,320	+				-1.5
4,766,320	+				+0.4
4,766,320	+				-0.7
4,766,321	-				-1.2
4,766,321	-				-0.6
4,766,383	+				-0.5
4,766,474	-		EFB2_04541	0.18	-0.6
4,766,485	+		EFB2_04541	0.19	+0.1
4,766,485	+		EFB2_04541	0.19	-0.3
4,766,485	+		EFB2_04541	0.19	+1.3
4,766,485	+		EFB2_04541	0.19	+0.0
4,766,486	-		EFB2_04541	0.20	-2.1
4,766,486	-		EFB2_04541	0.20	+0.1
4,766,487	+		EFB2_04541	0.20	-0.9
4,766,487	+		EFB2_04541	0.20	-0.1
4,766,487	+		EFB2_04541	0.20	+0.6
4,766,488	-		EFB2_04541	0.20	-0.8
4,766,488	-		EFB2_04541	0.20	+0.5
4,766,488	-		EFB2_04541	0.20	-1.0
4,766,488	-		EFB2_04541	0.20	-1.8
4,766,492	+		EFB2_04541	0.20	+0.8
4,766,492	+		EFB2_04541	0.20	-0.9
4,766,492	+		EFB2_04541	0.20	-0.1
4,766,493	-		EFB2_04541	0.20	-2.9
4,766,503	+		EFB2_04541	0.22	-0.8
4,766,503	+		EFB2_04541	0.22	-2.3
4,766,548	+		EFB2_04541	0.27	-0.2
4,766,548	+		EFB2_04541	0.27	+0.7
4,766,549	-		EFB2_04541	0.27	+0.3
4,766,549	-		EFB2_04541	0.27	+1.0
4,766,569	+		EFB2_04541	0.29	-0.6
4,766,569	+		EFB2_04541	0.29	-3.0
4,766,569	+		EFB2_04541	0.29	+2.7
4,766,570	-		EFB2_04541	0.29	-0.7
4,766,570	-		EFB2_04541	0.29	+0.6
4,766,573	+		EFB2_04541	0.30	-0.2
4,766,573	+		EFB2_04541	0.30	+1.1
4,766,626	+		EFB2_04541	0.36	+0.3
4,766,626	+		EFB2_04541	0.36	-0.6
4,766,627	-		EFB2_04541	0.36	-0.3
4,766,653	+		EFB2_04541	0.39	-0.9
4,766,659	+		EFB2_04541	0.39	-2.4
4,766,659	+		EFB2_04541	0.39	+0.8
4,766,659	+		EFB2_04541	0.39	-0.4
4,766,659	+		EFB2_04541	0.39	-0.9
4,766,660	-		EFB2_04541	0.40	-1.3
4,766,660	-		EFB2_04541	0.40	-2.0
4,766,660	-		EFB2_04541	0.40	-0.1
4,766,699	+		EFB2_04541	0.44	+0.5
4,766,709	+		EFB2_04541	0.45	+0.9
4,766,709	+		EFB2_04541	0.45	-0.7
4,766,709	+		EFB2_04541	0.45	+0.1
4,766,710	-		EFB2_04541	0.45	+0.0
4,766,710	-		EFB2_04541	0.45	+0.3
4,766,710	-		EFB2_04541	0.45	-0.6
4,766,710	-		EFB2_04541	0.45	-1.0
4,766,710	-		EFB2_04541	0.45	-2.2
4,766,714	+		EFB2_04541	0.46	+0.3
4,766,714	+		EFB2_04541	0.46	+0.5
4,766,720	-		EFB2_04541	0.46	-2.7
4,766,743	+		EFB2_04541	0.49	-0.2
4,766,744	-		EFB2_04541	0.49	-1.7
4,766,773	+		EFB2_04541	0.52	+0.3
4,766,773	+		EFB2_04541	0.52	-0.0
4,766,773	+		EFB2_04541	0.52	-1.6
4,766,773	+		EFB2_04541	0.52	+0.8
4,766,773	+		EFB2_04541	0.52	-1.2
4,766,773	+		EFB2_04541	0.52	-3.9
4,766,773	+		EFB2_04541	0.52	-1.6
4,766,774	-		EFB2_04541	0.53	-0.4
4,766,774	-		EFB2_04541	0.53	-1.9
4,766,774	-		EFB2_04541	0.53	-1.8
4,766,774	-		EFB2_04541	0.53	+0.2
4,766,774	-		EFB2_04541	0.53	-3.2
4,766,774	-		EFB2_04541	0.53	-0.0
4,766,774	-		EFB2_04541	0.53	-2.0
4,766,774	-		EFB2_04541	0.53	-0.1
4,766,803	+		EFB2_04541	0.56	-3.9
4,766,803	+		EFB2_04541	0.56	+0.3
4,766,803	+		EFB2_04541	0.56	+0.0
4,766,804	-		EFB2_04541	0.56	+0.6
4,766,804	-		EFB2_04541	0.56	-1.8
4,766,804	-		EFB2_04541	0.56	-0.1
4,766,875	+		EFB2_04541	0.64	+0.2
4,766,888	+		EFB2_04541	0.66	+0.1
4,766,888	+		EFB2_04541	0.66	+1.1
4,766,889	-		EFB2_04541	0.66	+0.0
4,766,889	-		EFB2_04541	0.66	-0.8
4,766,932	+		EFB2_04541	0.71	-2.4
4,766,932	+		EFB2_04541	0.71	+0.4
4,766,933	-		EFB2_04541	0.71	-0.3
4,766,973	+		EFB2_04541	0.75	+0.4
4,766,973	+		EFB2_04541	0.75	-2.4
4,766,973	+		EFB2_04541	0.75	+0.1
4,766,973	+		EFB2_04541	0.75	+1.1
4,766,973	+		EFB2_04541	0.75	-0.2
4,766,973	+		EFB2_04541	0.75	-2.6
4,766,973	+		EFB2_04541	0.75	-1.5
4,766,973	+		EFB2_04541	0.75	-1.0
4,766,973	+		EFB2_04541	0.75	-0.5
4,766,973	+		EFB2_04541	0.75	+0.6
4,766,973	+		EFB2_04541	0.75	+1.4
4,766,973	+		EFB2_04541	0.75	+0.8
4,766,973	+		EFB2_04541	0.75	-0.9
4,766,974	-		EFB2_04541	0.75	-1.7
4,766,974	-		EFB2_04541	0.75	+0.5
4,766,974	-		EFB2_04541	0.75	+1.1
4,766,974	-		EFB2_04541	0.75	-1.4
4,766,974	-		EFB2_04541	0.75	-1.1
4,766,974	-		EFB2_04541	0.75	+1.7
4,766,974	-		EFB2_04541	0.75	-3.2
4,767,061	+		EFB2_04541	0.85	-0.2
4,767,062	-		EFB2_04541	0.86	+1.2
4,767,062	-		EFB2_04541	0.86	-0.2
4,767,062	-		EFB2_04541	0.86	+0.6
4,767,062	-		EFB2_04541	0.86	+0.7
4,767,062	-		EFB2_04541	0.86	+0.8
4,767,062	-		EFB2_04541	0.86	-2.7
4,767,096	+		EFB2_04541	0.89	+1.1
4,767,103	+				+1.0
4,767,103	+				+2.1
4,767,115	+				+0.5
4,767,190	+				+0.5
4,767,191	-				-2.1
4,767,191	-				-0.9
4,767,201	+				+0.8
4,767,202	-				-1.0
4,767,226	+				+0.6
4,767,304	+				+0.3
4,767,304	+				-0.1
4,767,304	+				-1.5
4,767,305	-				-1.4
4,767,341	-		EFB2_04542	0.12	+0.1
4,767,341	-		EFB2_04542	0.12	-0.4
4,767,365	-		EFB2_04542	0.14	-0.8
4,767,365	-		EFB2_04542	0.14	+0.8
4,767,410	-		EFB2_04542	0.18	-0.3
4,767,525	+		EFB2_04542	0.28	+1.1
4,767,525	+		EFB2_04542	0.28	-0.2
4,767,526	-		EFB2_04542	0.28	-0.4
4,767,527	+		EFB2_04542	0.28	-0.4
4,767,527	+		EFB2_04542	0.28	+0.4
4,767,527	+		EFB2_04542	0.28	-0.7
4,767,527	+		EFB2_04542	0.28	+0.4
4,767,527	+		EFB2_04542	0.28	-0.8
4,767,527	+		EFB2_04542	0.28	+0.4
4,767,527	+		EFB2_04542	0.28	+0.3
4,767,527	+		EFB2_04542	0.28	+0.1
4,767,528	-		EFB2_04542	0.28	+1.1
4,767,528	-		EFB2_04542	0.28	+1.2
4,767,553	+		EFB2_04542	0.30	+0.5
4,767,606	+		EFB2_04542	0.35	-0.7
4,767,606	+		EFB2_04542	0.35	+0.2
4,767,606	+		EFB2_04542	0.35	-0.6
4,767,606	+		EFB2_04542	0.35	-2.1
4,767,606	+		EFB2_04542	0.35	-0.6
4,767,606	+		EFB2_04542	0.35	+1.2
4,767,606	+		EFB2_04542	0.35	+0.6
4,767,606	+		EFB2_04542	0.35	-2.5
4,767,606	+		EFB2_04542	0.35	-0.4
4,767,606	+		EFB2_04542	0.35	-0.6
4,767,606	+		EFB2_04542	0.35	+1.1
4,767,606	+		EFB2_04542	0.35	+0.4
4,767,606	+		EFB2_04542	0.35	+0.6
4,767,606	+		EFB2_04542	0.35	-0.0
4,767,607	-		EFB2_04542	0.35	+1.2
4,767,607	-		EFB2_04542	0.35	+0.0
4,767,607	-		EFB2_04542	0.35	+1.4
4,767,607	-		EFB2_04542	0.35	+2.1
4,767,607	-		EFB2_04542	0.35	-0.2
4,767,607	-		EFB2_04542	0.35	+1.4
4,767,607	-		EFB2_04542	0.35	-1.9
4,767,607	-		EFB2_04542	0.35	-0.4
4,767,607	-		EFB2_04542	0.35	+0.5
4,767,607	-		EFB2_04542	0.35	-1.7
4,767,607	-		EFB2_04542	0.35	+2.3
4,767,607	-		EFB2_04542	0.35	-1.1
4,767,607	-		EFB2_04542	0.35	-2.3
4,767,610	+		EFB2_04542	0.35	-0.7
4,767,610	+		EFB2_04542	0.35	-2.9
4,767,610	+		EFB2_04542	0.35	-1.1
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