Strain Fitness in Escherichia fergusonii Becca around EFB2_04024

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
4,229,105	+				-2.3
4,229,115	+				+0.6
4,229,115	+				+0.4
4,229,132	-				-1.6
4,229,132	-				-1.2
4,229,145	+				-1.2
4,229,145	+				+0.9
4,229,146	-				-0.4
4,229,146	-				+0.4
4,229,146	-				-0.5
4,229,146	-				+0.0
4,229,146	-				+0.2
4,229,152	+				+0.1
4,229,152	+				-3.4
4,229,152	+				+0.6
4,229,153	-				-0.3
4,229,153	-				+1.1
4,229,153	-				-2.7
4,229,153	-				-0.9
4,229,161	+				+0.8
4,229,161	+				-0.1
4,229,161	+				+0.9
4,229,161	+				-0.7
4,229,161	+				+0.2
4,229,161	+				-0.6
4,229,161	+				+1.0
4,229,161	+				-2.1
4,229,161	+				+1.0
4,229,162	-				+0.8
4,229,162	-				+2.1
4,229,162	-				+1.2
4,229,162	-				+1.4
4,229,162	-				-0.8
4,229,162	-				-1.9
4,229,162	-				+0.5
4,229,162	-				-1.5
4,229,162	-				+0.1
4,229,162	-				+0.5
4,229,168	+				+0.2
4,229,169	-				-0.5
4,229,169	-				-0.5
4,229,211	+		EFB2_04023	0.11	-0.7
4,229,212	-		EFB2_04023	0.11	+1.0
4,229,212	-		EFB2_04023	0.11	-0.0
4,229,212	-		EFB2_04023	0.11	+1.0
4,229,240	+		EFB2_04023	0.14	-2.3
4,229,241	-		EFB2_04023	0.14	-1.6
4,229,241	-		EFB2_04023	0.14	+0.8
4,229,241	-		EFB2_04023	0.14	+0.5
4,229,264	-		EFB2_04023	0.17	-0.8
4,229,265	+		EFB2_04023	0.17	-0.5
4,229,265	+		EFB2_04023	0.17	-1.9
4,229,265	+		EFB2_04023	0.17	+0.4
4,229,265	+		EFB2_04023	0.17	-0.9
4,229,265	+		EFB2_04023	0.17	-0.8
4,229,266	-		EFB2_04023	0.17	-0.3
4,229,266	-		EFB2_04023	0.17	-2.1
4,229,266	-		EFB2_04023	0.17	+0.3
4,229,266	-		EFB2_04023	0.17	-0.6
4,229,266	-		EFB2_04023	0.17	-0.1
4,229,275	+		EFB2_04023	0.18	-1.4
4,229,276	-		EFB2_04023	0.18	+0.4
4,229,280	+		EFB2_04023	0.18	-1.2
4,229,280	+		EFB2_04023	0.18	-0.3
4,229,280	+		EFB2_04023	0.18	-1.1
4,229,281	-		EFB2_04023	0.19	+0.3
4,229,281	-		EFB2_04023	0.19	-0.4
4,229,302	+		EFB2_04023	0.21	+0.4
4,229,303	-		EFB2_04023	0.21	-2.4
4,229,303	-		EFB2_04023	0.21	+0.3
4,229,303	-		EFB2_04023	0.21	-0.2
4,229,309	-		EFB2_04023	0.22	+1.8
4,229,309	-		EFB2_04023	0.22	+0.4
4,229,309	-		EFB2_04023	0.22	+0.1
4,229,386	+		EFB2_04023	0.30	+0.8
4,229,386	+		EFB2_04023	0.30	+0.7
4,229,386	+		EFB2_04023	0.30	+0.3
4,229,387	-		EFB2_04023	0.30	-1.1
4,229,387	-		EFB2_04023	0.30	-1.4
4,229,396	+		EFB2_04023	0.31	+0.5
4,229,396	+		EFB2_04023	0.31	-1.2
4,229,396	+		EFB2_04023	0.31	-0.5
4,229,396	+		EFB2_04023	0.31	-0.0
4,229,397	-		EFB2_04023	0.31	-3.0
4,229,397	-		EFB2_04023	0.31	+1.1
4,229,399	+		EFB2_04023	0.32	-0.9
4,229,399	+		EFB2_04023	0.32	-1.6
4,229,399	+		EFB2_04023	0.32	+1.3
4,229,399	+		EFB2_04023	0.32	-0.7
4,229,399	+		EFB2_04023	0.32	-0.0
4,229,399	+		EFB2_04023	0.32	-0.9
4,229,399	+		EFB2_04023	0.32	+0.5
4,229,399	+		EFB2_04023	0.32	-0.0
4,229,400	-		EFB2_04023	0.32	+1.0
4,229,400	-		EFB2_04023	0.32	-0.3
4,229,400	-		EFB2_04023	0.32	-0.7
4,229,400	-		EFB2_04023	0.32	-0.2
4,229,400	-		EFB2_04023	0.32	+0.5
4,229,404	+		EFB2_04023	0.32	+1.6
4,229,404	+		EFB2_04023	0.32	+0.8
4,229,404	+		EFB2_04023	0.32	-1.6
4,229,404	+		EFB2_04023	0.32	+0.1
4,229,405	-		EFB2_04023	0.32	+1.2
4,229,405	-		EFB2_04023	0.32	-1.9
4,229,405	-		EFB2_04023	0.32	+0.4
4,229,405	-		EFB2_04023	0.32	+0.9
4,229,405	-		EFB2_04023	0.32	-0.7
4,229,434	+		EFB2_04023	0.36	-0.9
4,229,434	+		EFB2_04023	0.36	-0.3
4,229,435	-		EFB2_04023	0.36	-0.3
4,229,438	+		EFB2_04023	0.36	-1.1
4,229,438	+		EFB2_04023	0.36	-0.2
4,229,439	-		EFB2_04023	0.36	+0.9
4,229,439	-		EFB2_04023	0.36	+0.3
4,229,439	-		EFB2_04023	0.36	+0.1
4,229,488	+		EFB2_04023	0.42	-0.1
4,229,489	-		EFB2_04023	0.42	+1.1
4,229,581	+		EFB2_04023	0.52	+0.1
4,229,582	-		EFB2_04023	0.52	+0.7
4,229,590	+		EFB2_04023	0.53	+0.2
4,229,590	+		EFB2_04023	0.53	+1.7
4,229,590	+		EFB2_04023	0.53	-1.6
4,229,590	+		EFB2_04023	0.53	-0.5
4,229,591	-		EFB2_04023	0.53	+1.0
4,229,591	-		EFB2_04023	0.53	-0.7
4,229,591	-		EFB2_04023	0.53	+0.5
4,229,610	-		EFB2_04023	0.55	+0.6
4,229,610	-		EFB2_04023	0.55	-1.0
4,229,610	-		EFB2_04023	0.55	+1.7
4,229,610	-		EFB2_04023	0.55	-1.2
4,229,610	-		EFB2_04023	0.55	-0.1
4,229,610	-		EFB2_04023	0.55	-3.1
4,229,642	+		EFB2_04023	0.59	+1.9
4,229,642	+		EFB2_04023	0.59	-0.6
4,229,642	+		EFB2_04023	0.59	+0.2
4,229,642	+		EFB2_04023	0.59	-0.1
4,229,642	+		EFB2_04023	0.59	+0.7
4,229,642	+		EFB2_04023	0.59	+0.3
4,229,642	+		EFB2_04023	0.59	-1.5
4,229,642	+		EFB2_04023	0.59	+1.6
4,229,642	+		EFB2_04023	0.59	-0.4
4,229,642	+		EFB2_04023	0.59	-2.6
4,229,642	+		EFB2_04023	0.59	-0.8
4,229,643	-		EFB2_04023	0.59	+1.2
4,229,643	-		EFB2_04023	0.59	+0.9
4,229,643	-		EFB2_04023	0.59	+0.1
4,229,643	-		EFB2_04023	0.59	-3.0
4,229,643	-		EFB2_04023	0.59	+0.3
4,229,643	-		EFB2_04023	0.59	+1.5
4,229,643	-		EFB2_04023	0.59	+0.7
4,229,643	-		EFB2_04023	0.59	-3.3
4,229,643	-		EFB2_04023	0.59	+0.4
4,229,643	-		EFB2_04023	0.59	+0.5
4,229,643	-		EFB2_04023	0.59	+0.0
4,229,643	-		EFB2_04023	0.59	-0.7
4,229,643	-		EFB2_04023	0.59	-1.1
4,229,643	-		EFB2_04023	0.59	+3.0
4,229,643	-		EFB2_04023	0.59	-0.5
4,229,643	-		EFB2_04023	0.59	+0.2
4,229,643	-		EFB2_04023	0.59	-0.5
4,229,643	-		EFB2_04023	0.59	-1.0
4,229,735	+		EFB2_04023	0.69	-2.8
4,229,735	+		EFB2_04023	0.69	-1.8
4,229,735	+		EFB2_04023	0.69	-1.2
4,229,735	+		EFB2_04023	0.69	+0.3
4,229,735	+		EFB2_04023	0.69	-0.2
4,229,735	+		EFB2_04023	0.69	-0.5
4,229,735	+		EFB2_04023	0.69	+0.7
4,229,735	+		EFB2_04023	0.69	-0.2
4,229,736	-		EFB2_04023	0.69	+1.3
4,229,736	-		EFB2_04023	0.69	+0.5
4,229,736	-		EFB2_04023	0.69	-0.1
4,229,736	-		EFB2_04023	0.69	-0.4
4,229,754	+		EFB2_04023	0.71	+0.1
4,229,754	+		EFB2_04023	0.71	-1.0
4,229,754	+		EFB2_04023	0.71	+0.3
4,229,754	+		EFB2_04023	0.71	-1.6
4,229,755	-		EFB2_04023	0.71	-0.4
4,229,755	-		EFB2_04023	0.71	-0.6
4,229,755	-		EFB2_04023	0.71	-2.9
4,229,764	+		EFB2_04023	0.72	+0.4
4,229,783	+		EFB2_04023	0.74	-2.0
4,229,783	+		EFB2_04023	0.74	-0.9
4,229,783	+		EFB2_04023	0.74	-0.9
4,229,784	-		EFB2_04023	0.74	-0.7
4,229,805	+		EFB2_04023	0.77	-0.6
4,229,806	-		EFB2_04023	0.77	+1.0
4,229,806	-		EFB2_04023	0.77	-1.4
4,229,854	+		EFB2_04023	0.82	-0.7
4,229,854	+		EFB2_04023	0.82	-0.8
4,229,855	-		EFB2_04023	0.82	-3.2
4,229,855	-		EFB2_04023	0.82	+1.3
4,229,860	+		EFB2_04023	0.83	+0.1
4,229,860	+		EFB2_04023	0.83	+0.1
4,229,860	+		EFB2_04023	0.83	-1.9
4,229,860	+		EFB2_04023	0.83	-3.0
4,229,860	+		EFB2_04023	0.83	+2.1
4,229,860	+		EFB2_04023	0.83	-2.2
4,229,861	-		EFB2_04023	0.83	-1.0
4,229,861	-		EFB2_04023	0.83	+1.7
4,229,861	-		EFB2_04023	0.83	+1.6
4,229,864	+		EFB2_04023	0.83	-1.4
4,229,864	+		EFB2_04023	0.83	+1.8
4,229,864	+		EFB2_04023	0.83	-0.3
4,229,864	+		EFB2_04023	0.83	-0.5
4,229,864	+		EFB2_04023	0.83	+1.1
4,229,864	+		EFB2_04023	0.83	-0.9
4,229,865	-		EFB2_04023	0.83	+0.4
4,229,865	-		EFB2_04023	0.83	+0.1
4,229,865	-		EFB2_04023	0.83	-1.3
4,229,865	-		EFB2_04023	0.83	+1.2
4,229,865	-		EFB2_04023	0.83	-1.9
4,229,865	-		EFB2_04023	0.83	+0.7
4,229,865	-		EFB2_04023	0.83	-0.4
4,229,865	-		EFB2_04023	0.83	+0.7
4,229,865	-		EFB2_04023	0.83	+0.3
4,229,865	-		EFB2_04023	0.83	+0.1
4,229,865	-		EFB2_04023	0.83	+0.0
4,229,865	-		EFB2_04023	0.83	+1.3
4,229,909	-		EFB2_04023	0.88	+0.3
4,229,924	+				-2.8
4,229,924	+				-0.0
4,229,924	+				-1.1
4,229,924	+				+0.4
4,229,928	+				+0.2
4,229,928	+				+1.0
4,229,928	+				-0.9
4,229,929	-				-1.0
4,229,967	+				+0.6
4,229,967	+				+0.9
4,229,968	-				-1.2
4,229,982	+				-0.4
4,229,982	+				-0.0
4,229,982	+				+1.1
4,229,983	-				+1.6
4,229,983	-				+0.7
4,229,983	-				-1.3
4,229,985	+				-1.1
4,229,985	+				+0.3
4,229,985	+				-1.8
4,229,985	+				-2.0
4,229,985	+				-0.4
4,229,985	+				+0.8
4,229,985	+				+0.4
4,229,985	+				+0.6
4,229,985	+				+1.8
4,229,985	+				-3.7
4,229,985	+				-1.1
4,229,985	+				+0.1
4,229,985	+				+1.3
4,229,985	+				+0.0
4,229,985	+				+0.7
4,229,985	+				+0.5
4,229,985	+				-1.0
4,229,985	+				-0.2
4,229,985	+				+1.3
4,229,986	-				-3.0
4,229,986	-				+1.0
4,229,986	-				-0.9
4,229,986	-				+0.3
4,229,986	-				-0.0
4,229,986	-				-1.2
4,229,986	-				-1.0
4,229,986	-				-2.7
4,229,986	-				-1.2
4,229,986	-				-1.8
4,229,997	+				+0.4
4,229,997	+				-0.9
4,229,997	+				-0.1
4,229,998	-				-1.6
4,229,998	-				+1.1
4,229,998	-				-1.7
4,229,998	-				-1.7
4,229,998	-				-0.9
4,229,998	-				-0.2
4,230,005	-				-2.6
4,230,032	+				+0.1
4,230,054	+				-2.3
4,230,067	+				-0.0
4,230,067	+				+0.3
4,230,067	+				+0.1
4,230,067	+				+0.2
4,230,067	+				-0.9
4,230,068	-				+0.7
4,230,068	-				+1.0
4,230,068	-				+0.0
4,230,094	+				+0.9
4,230,094	+				-1.5
4,230,094	+				-0.2
4,230,094	+				-1.0
4,230,095	-				+0.0
4,230,095	-				+1.0
4,230,095	-				+0.9
4,230,095	-				-0.3
4,230,095	-				-0.3
4,230,114	+				+0.6
4,230,114	+				-0.9
4,230,114	+				+0.7
4,230,114	+				-2.6
4,230,114	+				+1.7
4,230,114	+				+1.9
4,230,114	+				+0.8
4,230,114	+				+1.1
4,230,114	+				-0.7
4,230,114	+				+0.6
4,230,114	+				+0.1
4,230,114	+				+0.1
4,230,114	+				-1.5
4,230,114	+				-2.3
4,230,114	+				-2.4
4,230,115	-				+0.2
4,230,115	-				+4.6
4,230,115	-				-0.6
4,230,115	-				+1.7
4,230,115	-				+0.8
4,230,115	-				-2.0
4,230,115	-				+0.7
4,230,115	-				-0.6
4,230,115	-				-0.9
4,230,115	-				+0.2
4,230,115	-				-0.5
4,230,115	-				-0.1
4,230,115	-				-2.1
4,230,115	-				-0.6
4,230,115	-				-1.0
4,230,115	-				+0.1
4,230,115	-				+1.3
4,230,115	-				+0.2
4,230,116	+				+0.8
4,230,116	+				+3.4
4,230,124	+				-1.7
4,230,153	+				+1.9
4,230,153	+				+2.0
4,230,153	+				+0.6
4,230,154	-				-1.9
4,230,154	-				-0.7
4,230,158	-				+0.3
4,230,158	-				-2.0
4,230,171	+				-3.0
4,230,171	+				+2.1
4,230,172	-				+0.1
4,230,172	-				-0.3
4,230,187	+				-0.9
4,230,187	+				-0.7
4,230,187	+				+0.9
4,230,187	+				+2.3
4,230,187	+				-2.2
4,230,187	+				+1.0
4,230,188	-				+1.4
4,230,188	-				+0.7
4,230,188	-				-0.4
4,230,188	-				-0.7
4,230,188	-				+2.5
4,230,188	-				+1.1
4,230,192	+				-1.3
4,230,213	+		EFB2_04024	0.11	+1.3
4,230,214	-		EFB2_04024	0.12	+3.0
4,230,219	+		EFB2_04024	0.12	-2.1
4,230,219	+		EFB2_04024	0.12	-0.5
4,230,219	+		EFB2_04024	0.12	-1.2
4,230,219	+		EFB2_04024	0.12	-1.4
4,230,220	-		EFB2_04024	0.12	-2.0
4,230,220	-		EFB2_04024	0.12	+1.8
4,230,220	-		EFB2_04024	0.12	+0.5
4,230,220	-		EFB2_04024	0.12	-0.0
4,230,220	-		EFB2_04024	0.12	+0.3
4,230,220	-		EFB2_04024	0.12	-0.5
4,230,220	-		EFB2_04024	0.12	+0.5
4,230,220	-		EFB2_04024	0.12	+1.0
4,230,220	-		EFB2_04024	0.12	+0.4
4,230,220	-		EFB2_04024	0.12	-2.6
4,230,220	-		EFB2_04024	0.12	-2.2
4,230,225	+		EFB2_04024	0.13	+0.1
4,230,225	+		EFB2_04024	0.13	-0.5
4,230,225	+		EFB2_04024	0.13	-2.1
4,230,225	+		EFB2_04024	0.13	+0.5
4,230,225	+		EFB2_04024	0.13	+0.6
4,230,225	+		EFB2_04024	0.13	+1.1
4,230,225	+		EFB2_04024	0.13	+0.5
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