Strain Fitness in Escherichia fergusonii Becca around EFB2_03250

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,400,844	+		EFB2_03249	0.60	+2.1
3,400,845	-		EFB2_03249	0.60	+1.2
3,400,862	+		EFB2_03249	0.61	+1.1
3,400,862	+		EFB2_03249	0.61	-1.6
3,400,862	+		EFB2_03249	0.61	-0.8
3,400,863	-		EFB2_03249	0.61	-0.6
3,400,863	-		EFB2_03249	0.61	-0.4
3,400,863	-		EFB2_03249	0.61	-0.4
3,400,863	-		EFB2_03249	0.61	-0.6
3,400,879	+		EFB2_03249	0.62	-0.1
3,400,879	+		EFB2_03249	0.62	-1.0
3,400,879	+		EFB2_03249	0.62	-0.6
3,400,879	+		EFB2_03249	0.62	-1.7
3,400,879	+		EFB2_03249	0.62	+0.6
3,400,879	+		EFB2_03249	0.62	+1.3
3,400,879	+		EFB2_03249	0.62	+1.9
3,400,879	+		EFB2_03249	0.62	-0.7
3,400,879	+		EFB2_03249	0.62	+0.2
3,400,880	-		EFB2_03249	0.62	+0.4
3,400,880	-		EFB2_03249	0.62	+1.2
3,400,880	-		EFB2_03249	0.62	-2.2
3,400,880	-		EFB2_03249	0.62	+0.4
3,400,880	-		EFB2_03249	0.62	-1.8
3,400,888	+		EFB2_03249	0.62	-1.4
3,400,888	+		EFB2_03249	0.62	-0.8
3,400,888	+		EFB2_03249	0.62	+1.9
3,400,888	+		EFB2_03249	0.62	-1.1
3,400,888	+		EFB2_03249	0.62	-0.0
3,400,888	+		EFB2_03249	0.62	-0.2
3,400,888	+		EFB2_03249	0.62	-3.4
3,400,888	+		EFB2_03249	0.62	+0.1
3,400,888	+		EFB2_03249	0.62	-0.1
3,400,888	+		EFB2_03249	0.62	+1.2
3,400,888	+		EFB2_03249	0.62	-1.8
3,400,888	+		EFB2_03249	0.62	+0.6
3,400,889	-		EFB2_03249	0.62	-2.0
3,400,889	-		EFB2_03249	0.62	-2.9
3,400,889	-		EFB2_03249	0.62	+0.7
3,400,889	-		EFB2_03249	0.62	-1.7
3,400,889	-		EFB2_03249	0.62	+1.2
3,400,889	-		EFB2_03249	0.62	+0.3
3,400,889	-		EFB2_03249	0.62	+0.3
3,400,889	-		EFB2_03249	0.62	+0.2
3,400,889	-		EFB2_03249	0.62	-1.1
3,400,889	-		EFB2_03249	0.62	+1.5
3,400,889	-		EFB2_03249	0.62	+0.9
3,400,889	-		EFB2_03249	0.62	-1.2
3,400,889	-		EFB2_03249	0.62	+1.1
3,400,889	-		EFB2_03249	0.62	+1.0
3,400,994	+		EFB2_03249	0.67	+3.0
3,400,994	+		EFB2_03249	0.67	-0.6
3,400,995	-		EFB2_03249	0.67	+1.3
3,400,995	-		EFB2_03249	0.67	-0.0
3,401,023	+		EFB2_03249	0.68	-0.6
3,401,024	-		EFB2_03249	0.68	-1.3
3,401,144	+		EFB2_03249	0.73	+0.4
3,401,144	+		EFB2_03249	0.73	-1.6
3,401,144	+		EFB2_03249	0.73	+1.2
3,401,145	-		EFB2_03249	0.73	-2.0
3,401,145	-		EFB2_03249	0.73	-0.2
3,401,145	-		EFB2_03249	0.73	+0.7
3,401,161	+		EFB2_03249	0.74	-1.0
3,401,161	+		EFB2_03249	0.74	+0.6
3,401,161	+		EFB2_03249	0.74	-0.2
3,401,161	+		EFB2_03249	0.74	-2.1
3,401,161	+		EFB2_03249	0.74	+2.5
3,401,161	+		EFB2_03249	0.74	+0.3
3,401,162	-		EFB2_03249	0.74	+0.4
3,401,192	+		EFB2_03249	0.75	-3.7
3,401,192	+		EFB2_03249	0.75	-2.2
3,401,192	+		EFB2_03249	0.75	-1.7
3,401,192	+		EFB2_03249	0.75	+0.9
3,401,192	+		EFB2_03249	0.75	-2.4
3,401,192	+		EFB2_03249	0.75	+0.2
3,401,192	+		EFB2_03249	0.75	-1.0
3,401,192	+		EFB2_03249	0.75	-2.1
3,401,192	+		EFB2_03249	0.75	-0.4
3,401,192	+		EFB2_03249	0.75	-0.7
3,401,192	+		EFB2_03249	0.75	-0.1
3,401,192	+		EFB2_03249	0.75	-1.0
3,401,192	+		EFB2_03249	0.75	+0.7
3,401,192	+		EFB2_03249	0.75	+0.8
3,401,192	+		EFB2_03249	0.75	-1.0
3,401,192	+		EFB2_03249	0.75	-2.1
3,401,192	+		EFB2_03249	0.75	+0.6
3,401,192	+		EFB2_03249	0.75	-0.1
3,401,192	+		EFB2_03249	0.75	-1.3
3,401,192	+		EFB2_03249	0.75	+0.5
3,401,192	+		EFB2_03249	0.75	+0.6
3,401,192	+		EFB2_03249	0.75	-0.3
3,401,192	+		EFB2_03249	0.75	+1.2
3,401,192	+		EFB2_03249	0.75	-0.3
3,401,192	+		EFB2_03249	0.75	-1.0
3,401,192	+		EFB2_03249	0.75	+0.3
3,401,192	+		EFB2_03249	0.75	+0.5
3,401,192	+		EFB2_03249	0.75	+0.4
3,401,192	+		EFB2_03249	0.75	-0.7
3,401,192	+		EFB2_03249	0.75	+1.0
3,401,192	+		EFB2_03249	0.75	-1.6
3,401,192	+		EFB2_03249	0.75	-0.8
3,401,192	+		EFB2_03249	0.75	-0.2
3,401,192	+		EFB2_03249	0.75	-1.0
3,401,192	+		EFB2_03249	0.75	-2.5
3,401,192	+		EFB2_03249	0.75	+0.2
3,401,192	+		EFB2_03249	0.75	+1.0
3,401,192	+		EFB2_03249	0.75	+0.3
3,401,192	+		EFB2_03249	0.75	-0.8
3,401,192	+		EFB2_03249	0.75	+1.6
3,401,193	-		EFB2_03249	0.75	+3.4
3,401,193	-		EFB2_03249	0.75	-0.4
3,401,193	-		EFB2_03249	0.75	+0.6
3,401,193	-		EFB2_03249	0.75	-0.8
3,401,193	-		EFB2_03249	0.75	+0.5
3,401,193	-		EFB2_03249	0.75	-0.7
3,401,193	-		EFB2_03249	0.75	-0.2
3,401,193	-		EFB2_03249	0.75	-1.1
3,401,193	-		EFB2_03249	0.75	-0.3
3,401,193	-		EFB2_03249	0.75	+0.5
3,401,193	-		EFB2_03249	0.75	+0.2
3,401,193	-		EFB2_03249	0.75	+1.4
3,401,193	-		EFB2_03249	0.75	+0.7
3,401,193	-		EFB2_03249	0.75	+1.4
3,401,193	-		EFB2_03249	0.75	+0.7
3,401,193	-		EFB2_03249	0.75	-0.3
3,401,193	-		EFB2_03249	0.75	+0.6
3,401,193	-		EFB2_03249	0.75	-2.6
3,401,193	-		EFB2_03249	0.75	-2.1
3,401,193	-		EFB2_03249	0.75	+0.0
3,401,193	-		EFB2_03249	0.75	+0.2
3,401,193	-		EFB2_03249	0.75	+0.6
3,401,193	-		EFB2_03249	0.75	+0.6
3,401,193	-		EFB2_03249	0.75	-0.7
3,401,193	-		EFB2_03249	0.75	+2.2
3,401,193	-		EFB2_03249	0.75	-2.7
3,401,193	-		EFB2_03249	0.75	+0.7
3,401,193	-		EFB2_03249	0.75	+0.7
3,401,193	-		EFB2_03249	0.75	-0.3
3,401,193	-		EFB2_03249	0.75	-0.5
3,401,193	-		EFB2_03249	0.75	+0.1
3,401,193	-		EFB2_03249	0.75	-0.2
3,401,193	-		EFB2_03249	0.75	+0.7
3,401,193	-		EFB2_03249	0.75	-0.1
3,401,193	-		EFB2_03249	0.75	+0.6
3,401,193	-		EFB2_03249	0.75	+1.0
3,401,193	-		EFB2_03249	0.75	+0.4
3,401,198	+		EFB2_03249	0.75	-1.2
3,401,199	-		EFB2_03249	0.75	-0.0
3,401,199	-		EFB2_03249	0.75	-0.5
3,401,199	-		EFB2_03249	0.75	-1.8
3,401,208	+		EFB2_03249	0.76	-0.9
3,401,209	-		EFB2_03249	0.76	-1.3
3,401,209	-		EFB2_03249	0.76	+2.1
3,401,209	-		EFB2_03249	0.76	-0.7
3,401,209	-		EFB2_03249	0.76	+1.6
3,401,310	+		EFB2_03249	0.80	-1.8
3,401,310	+		EFB2_03249	0.80	-0.2
3,401,310	+		EFB2_03249	0.80	+1.3
3,401,310	+		EFB2_03249	0.80	+1.2
3,401,310	+		EFB2_03249	0.80	-1.9
3,401,310	+		EFB2_03249	0.80	-1.6
3,401,310	+		EFB2_03249	0.80	-0.8
3,401,311	-		EFB2_03249	0.80	-1.0
3,401,311	-		EFB2_03249	0.80	-0.6
3,401,311	-		EFB2_03249	0.80	+0.8
3,401,311	-		EFB2_03249	0.80	+0.9
3,401,311	-		EFB2_03249	0.80	+0.3
3,401,325	+		EFB2_03249	0.80	-2.2
3,401,325	+		EFB2_03249	0.80	+1.7
3,401,325	+		EFB2_03249	0.80	-0.6
3,401,325	+		EFB2_03249	0.80	+1.6
3,401,325	+		EFB2_03249	0.80	-0.0
3,401,325	+		EFB2_03249	0.80	+0.2
3,401,325	+		EFB2_03249	0.80	+0.4
3,401,325	+		EFB2_03249	0.80	+0.2
3,401,325	+		EFB2_03249	0.80	+1.1
3,401,325	+		EFB2_03249	0.80	-2.1
3,401,326	-		EFB2_03249	0.80	+0.3
3,401,326	-		EFB2_03249	0.80	+0.4
3,401,326	-		EFB2_03249	0.80	+0.6
3,401,326	-		EFB2_03249	0.80	+0.6
3,401,326	-		EFB2_03249	0.80	+0.8
3,401,326	-		EFB2_03249	0.80	+0.8
3,401,326	-		EFB2_03249	0.80	-1.3
3,401,326	-		EFB2_03249	0.80	+0.0
3,401,326	-		EFB2_03249	0.80	-1.3
3,401,326	-		EFB2_03249	0.80	-2.4
3,401,326	-		EFB2_03249	0.80	+1.9
3,401,326	-		EFB2_03249	0.80	-3.2
3,401,326	-		EFB2_03249	0.80	-1.1
3,401,355	-		EFB2_03249	0.82	-3.5
3,401,367	+		EFB2_03249	0.82	-0.4
3,401,367	+		EFB2_03249	0.82	-0.8
3,401,367	+		EFB2_03249	0.82	-0.2
3,401,367	+		EFB2_03249	0.82	-0.6
3,401,367	+		EFB2_03249	0.82	+0.7
3,401,368	-		EFB2_03249	0.82	-1.6
3,401,368	-		EFB2_03249	0.82	-0.7
3,401,368	-		EFB2_03249	0.82	+0.8
3,401,368	-		EFB2_03249	0.82	+1.4
3,401,368	-		EFB2_03249	0.82	+0.3
3,401,368	-		EFB2_03249	0.82	+1.2
3,401,380	+		EFB2_03249	0.83	+0.3
3,401,380	+		EFB2_03249	0.83	-1.5
3,401,380	+		EFB2_03249	0.83	+0.0
3,401,380	+		EFB2_03249	0.83	-0.7
3,401,381	-		EFB2_03249	0.83	-1.1
3,401,410	+		EFB2_03249	0.84	-0.2
3,401,410	+		EFB2_03249	0.84	-1.1
3,401,410	+		EFB2_03249	0.84	+1.2
3,401,410	+		EFB2_03249	0.84	+1.0
3,401,410	+		EFB2_03249	0.84	+0.5
3,401,410	+		EFB2_03249	0.84	-2.3
3,401,411	-		EFB2_03249	0.84	+0.3
3,401,411	-		EFB2_03249	0.84	+1.8
3,401,411	-		EFB2_03249	0.84	+0.4
3,401,417	+		EFB2_03249	0.84	+2.0
3,401,417	+		EFB2_03249	0.84	+0.1
3,401,417	+		EFB2_03249	0.84	-0.7
3,401,417	+		EFB2_03249	0.84	+1.6
3,401,417	+		EFB2_03249	0.84	-1.3
3,401,418	-		EFB2_03249	0.84	+0.3
3,401,418	-		EFB2_03249	0.84	-0.4
3,401,418	-		EFB2_03249	0.84	-1.6
3,401,418	-		EFB2_03249	0.84	-0.4
3,401,418	-		EFB2_03249	0.84	-2.6
3,401,489	+		EFB2_03249	0.87	+1.6
3,401,489	+		EFB2_03249	0.87	+2.3
3,401,490	-		EFB2_03249	0.87	-1.0
3,401,490	-		EFB2_03249	0.87	-1.3
3,401,534	+		EFB2_03249	0.89	-2.5
3,401,534	+		EFB2_03249	0.89	+2.0
3,401,534	+		EFB2_03249	0.89	+0.6
3,401,576	+				+0.4
3,401,584	+				-0.8
3,401,584	+				-2.1
3,401,585	-				+3.2
3,401,585	-				-1.3
3,401,585	-				+0.6
3,401,585	-				-2.3
3,401,585	-				+1.2
3,401,650	+				+0.3
3,401,650	+				-0.1
3,401,650	+				-2.1
3,401,650	+				-3.4
3,401,650	+				-2.3
3,401,650	+				-1.8
3,401,650	+				-1.6
3,401,650	+				-2.6
3,401,651	-				+0.7
3,401,651	-				+0.4
3,401,651	-				-2.3
3,401,675	+				-0.6
3,401,676	-				-1.1
3,401,676	-				+1.4
3,401,676	-				-2.1
3,401,707	+				-2.4
3,401,783	+				-0.8
3,401,783	+				+1.4
3,401,804	+				-1.2
3,401,804	+				+2.5
3,401,804	+				+0.2
3,401,805	-				+0.8
3,401,805	-				-1.8
3,401,805	-				+1.2
3,401,805	-				-0.7
3,401,805	-				-0.1
3,401,811	+				+1.6
3,401,811	+				-0.1
3,401,824	+				+1.2
3,401,825	-				-0.3
3,401,841	+				+0.9
3,401,842	-				-1.0
3,401,900	-		EFB2_03250	0.12	-0.1
3,401,932	+		EFB2_03250	0.16	+1.1
3,401,933	-		EFB2_03250	0.16	-1.6
3,401,933	-		EFB2_03250	0.16	+0.7
3,401,941	+		EFB2_03250	0.17	+0.1
3,401,941	+		EFB2_03250	0.17	+1.7
3,401,941	+		EFB2_03250	0.17	-2.0
3,401,941	+		EFB2_03250	0.17	-0.1
3,401,941	+		EFB2_03250	0.17	+2.3
3,401,941	+		EFB2_03250	0.17	-2.8
3,401,941	+		EFB2_03250	0.17	-0.3
3,401,941	+		EFB2_03250	0.17	+0.1
3,401,941	+		EFB2_03250	0.17	-1.7
3,401,941	+		EFB2_03250	0.17	+0.6
3,401,942	-		EFB2_03250	0.17	+1.5
3,401,942	-		EFB2_03250	0.17	-1.6
3,401,942	-		EFB2_03250	0.17	-0.5
3,401,942	-		EFB2_03250	0.17	+3.3
3,401,942	-		EFB2_03250	0.17	-2.3
3,401,942	-		EFB2_03250	0.17	+2.6
3,401,942	-		EFB2_03250	0.17	+1.0
3,401,942	-		EFB2_03250	0.17	-0.0
3,401,942	-		EFB2_03250	0.17	+0.8
3,401,942	-		EFB2_03250	0.17	-0.9
3,401,942	-		EFB2_03250	0.17	-3.4
3,401,942	-		EFB2_03250	0.17	-1.8
3,401,942	-		EFB2_03250	0.17	+0.7
3,401,942	-		EFB2_03250	0.17	-0.5
3,401,942	-		EFB2_03250	0.17	-3.5
3,401,942	-		EFB2_03250	0.17	+0.7
3,401,942	-		EFB2_03250	0.17	-2.1
3,401,942	-		EFB2_03250	0.17	-1.1
3,401,942	-		EFB2_03250	0.17	+2.3
3,401,942	-		EFB2_03250	0.17	+0.2
3,401,942	-		EFB2_03250	0.17	-2.5
3,401,942	-		EFB2_03250	0.17	-1.2
3,401,943	+		EFB2_03250	0.17	-0.7
3,401,943	+		EFB2_03250	0.17	-0.5
3,401,943	+		EFB2_03250	0.17	-1.2
3,401,943	+		EFB2_03250	0.17	-0.7
3,401,943	+		EFB2_03250	0.17	-0.3
3,401,943	+		EFB2_03250	0.17	-2.9
3,401,943	+		EFB2_03250	0.17	-1.5
3,401,943	+		EFB2_03250	0.17	-0.2
3,401,943	+		EFB2_03250	0.17	-0.5
3,401,943	+		EFB2_03250	0.17	-0.5
3,401,943	+		EFB2_03250	0.17	-2.4
3,401,943	+		EFB2_03250	0.17	+0.1
3,401,943	+		EFB2_03250	0.17	+0.9
3,401,943	+		EFB2_03250	0.17	-1.0
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