Strain Fitness in Escherichia fergusonii Becca around EFB2_02958

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,087,125	+				-0.3
3,087,125	+				-1.2
3,087,125	+				-0.5
3,087,125	+				+2.2
3,087,125	+				-0.8
3,087,125	+				-1.9
3,087,125	+				-1.4
3,087,125	+				-1.0
3,087,125	+				+1.3
3,087,125	+				+1.3
3,087,125	+				+1.0
3,087,187	+				+3.6
3,087,188	-				+0.1
3,087,188	-				-1.0
3,087,190	+				+2.0
3,087,190	+				+0.1
3,087,190	+				+1.4
3,087,190	+				+0.7
3,087,204	+				-1.9
3,087,204	+				+0.0
3,087,224	+				+0.5
3,087,224	+				+0.5
3,087,224	+				-0.9
3,087,224	+				-0.1
3,087,224	+				+0.1
3,087,224	+				-1.2
3,087,224	+				+0.5
3,087,224	+				-1.0
3,087,224	+				+0.2
3,087,225	-				+2.8
3,087,225	-				-0.6
3,087,225	-				-0.9
3,087,225	-				-0.0
3,087,225	-				-2.8
3,087,225	-				-2.0
3,087,243	-				-1.9
3,087,243	-				-0.5
3,087,270	-				+0.2
3,087,290	-				-0.5
3,087,290	-				+1.3
3,087,290	-				+0.7
3,087,290	-				-0.6
3,087,290	-				-0.4
3,087,290	-				-2.0
3,087,290	-				-1.9
3,087,290	-				+0.4
3,087,290	-				-0.1
3,087,294	-				-2.1
3,087,294	-				-1.9
3,087,322	+				+0.0
3,087,322	+				+1.5
3,087,322	+				-1.0
3,087,323	-				+2.8
3,087,323	-				+1.5
3,087,327	+				+0.7
3,087,328	-				+0.0
3,087,328	-				+1.0
3,087,345	-				-2.1
3,087,345	-				+1.2
3,087,386	+				-0.3
3,087,468	-		EFB2_02957	0.16	+2.5
3,087,468	-		EFB2_02957	0.16	-0.6
3,087,518	+		EFB2_02957	0.33	+1.8
3,087,518	+		EFB2_02957	0.33	-0.0
3,087,518	+		EFB2_02957	0.33	-1.0
3,087,518	+		EFB2_02957	0.33	+1.5
3,087,519	-		EFB2_02957	0.34	-2.9
3,087,519	-		EFB2_02957	0.34	-0.9
3,087,519	-		EFB2_02957	0.34	-1.2
3,087,519	-		EFB2_02957	0.34	-0.9
3,087,528	-		EFB2_02957	0.37	-1.4
3,087,528	-		EFB2_02957	0.37	-0.9
3,087,633	-		EFB2_02957	0.72	+1.8
3,087,651	-		EFB2_02957	0.78	+0.3
3,087,677	+		EFB2_02957	0.87	-0.2
3,087,677	+		EFB2_02957	0.87	-0.9
3,087,678	-		EFB2_02957	0.87	+0.5
3,087,818	+				+1.4
3,087,818	+				+1.8
3,087,843	+				-0.3
3,087,843	+				+0.2
3,087,843	+				-0.8
3,087,843	+				+2.4
3,087,843	+				+0.7
3,087,863	+				+0.9
3,087,863	+				+3.6
3,087,864	-				-2.2
3,087,864	-				-0.8
3,087,864	-				-0.7
3,087,893	-				-2.2
3,087,902	+				-1.6
3,087,902	+				+1.7
3,087,903	-				+1.8
3,087,903	-				-0.7
3,087,927	+				-1.2
3,087,927	+				+0.1
3,087,928	-				+1.6
3,087,928	-				+1.2
3,087,930	+				-1.6
3,087,930	+				+0.0
3,087,930	+				-2.1
3,087,931	-				+0.9
3,087,931	-				-0.3
3,087,931	-				-2.3
3,087,931	-				+1.2
3,087,939	+				+1.8
3,087,939	+				-0.5
3,087,939	+				+1.2
3,087,939	+				-1.0
3,087,940	-				-0.6
3,087,940	-				+0.8
3,087,940	-				-1.8
3,087,953	+				-1.1
3,087,953	+				+3.8
3,087,953	+				-1.2
3,087,954	-				-0.3
3,087,954	-				-0.9
3,087,954	-				+0.7
3,087,972	+				+0.9
3,087,972	+				+0.9
3,087,980	+				-0.6
3,087,980	+				-3.3
3,087,999	+				-1.6
3,088,005	+				-2.2
3,088,005	+				-2.3
3,088,005	+				-2.7
3,088,005	+				-2.1
3,088,005	+				-0.5
3,088,006	-				+1.7
3,088,006	-				-0.4
3,088,006	-				+0.2
3,088,006	-				-0.3
3,088,006	-				-2.8
3,088,006	-				+0.6
3,088,025	-				-2.6
3,088,060	+		EFB2_02958	0.23	-0.0
3,088,060	+		EFB2_02958	0.23	+0.7
3,088,060	+		EFB2_02958	0.23	+1.6
3,088,089	+		EFB2_02958	0.35	+0.2
3,088,089	+		EFB2_02958	0.35	+2.2
3,088,089	+		EFB2_02958	0.35	-1.0
3,088,089	+		EFB2_02958	0.35	+0.1
3,088,089	+		EFB2_02958	0.35	+1.1
3,088,090	-		EFB2_02958	0.36	+0.5
3,088,090	-		EFB2_02958	0.36	+1.2
3,088,090	-		EFB2_02958	0.36	+2.5
3,088,093	+		EFB2_02958	0.37	+2.8
3,088,093	+		EFB2_02958	0.37	-0.4
3,088,093	+		EFB2_02958	0.37	+1.2
3,088,093	+		EFB2_02958	0.37	+1.2
3,088,094	-		EFB2_02958	0.38	-1.0
3,088,094	-		EFB2_02958	0.38	+0.2
3,088,094	-		EFB2_02958	0.38	+1.2
3,088,094	-		EFB2_02958	0.38	-1.3
3,088,100	+		EFB2_02958	0.40	+1.5
3,088,100	+		EFB2_02958	0.40	-2.5
3,088,100	+		EFB2_02958	0.40	+3.8
3,088,100	+		EFB2_02958	0.40	-1.8
3,088,100	+		EFB2_02958	0.40	-0.2
3,088,100	+		EFB2_02958	0.40	+0.9
3,088,100	+		EFB2_02958	0.40	-2.1
3,088,101	-		EFB2_02958	0.41	-0.6
3,088,104	+		EFB2_02958	0.42	+0.8
3,088,104	+		EFB2_02958	0.42	+0.1
3,088,105	-		EFB2_02958	0.42	-0.3
3,088,143	+		EFB2_02958	0.59	-0.2
3,088,189	+		EFB2_02958	0.78	+0.6
3,088,210	+		EFB2_02958	0.87	+0.0
3,088,211	-		EFB2_02958	0.88	+1.0
3,088,211	-		EFB2_02958	0.88	-0.9
3,088,211	-		EFB2_02958	0.88	-1.3
3,088,211	-		EFB2_02958	0.88	+0.7
3,088,211	-		EFB2_02958	0.88	-0.9
3,088,211	-		EFB2_02958	0.88	+0.6
3,088,212	+		EFB2_02958	0.88	-1.6
3,088,212	+		EFB2_02958	0.88	-0.6
3,088,212	+		EFB2_02958	0.88	-1.8
3,088,212	+		EFB2_02958	0.88	-0.6
3,088,212	+		EFB2_02958	0.88	-2.1
3,088,212	+		EFB2_02958	0.88	-0.3
3,088,213	-		EFB2_02958	0.88	+2.2
3,088,220	+				+1.6
3,088,220	+				-1.5
3,088,220	+				-2.6
3,088,220	+				+1.7
3,088,220	+				-0.3
3,088,220	+				-1.6
3,088,220	+				+3.5
3,088,220	+				+0.5
3,088,220	+				-0.4
3,088,220	+				-0.5
3,088,220	+				-1.3
3,088,220	+				-2.6
3,088,220	+				+0.2
3,088,220	+				+0.6
3,088,220	+				+2.6
3,088,220	+				+1.4
3,088,221	-				-1.6
3,088,221	-				+0.2
3,088,221	-				-2.1
3,088,221	-				-0.0
3,088,221	-				-0.2
3,088,221	-				-1.6
3,088,221	-				-1.3
3,088,221	-				-1.6
3,088,221	-				+2.7
3,088,221	-				+2.5
3,088,221	-				+1.4
3,088,221	-				-1.5
3,088,221	-				-1.9
3,088,302	+				-0.2
3,088,302	+				-1.0
3,088,302	+				+1.6
3,088,302	+				+0.4
3,088,302	+				-1.4
3,088,303	-				+0.2
3,088,303	-				-0.2
3,088,303	-				-2.2
3,088,303	-				-1.5
3,088,303	-				-0.2
3,088,303	-				-0.6
3,088,316	+				+1.2
3,088,316	+				+0.7
3,088,316	+				-0.8
3,088,317	-				-0.5
3,088,317	-				+0.5
3,088,329	+				-1.8
3,088,341	+				-0.8
3,088,423	+				+2.6
3,088,424	-				+1.1
3,088,437	-				+1.2
3,088,463	+				-0.8
3,088,463	+				-0.8
3,088,464	-				+1.8
3,088,465	+				-1.7
3,088,465	+				-2.1
3,088,465	+				-0.8
3,088,465	+				+0.2
3,088,465	+				-1.6
3,088,465	+				-0.3
3,088,465	+				-1.4
3,088,465	+				+0.8
3,088,465	+				+3.8
3,088,465	+				-1.6
3,088,466	-				-1.3
3,088,466	-				-0.4
3,088,466	-				-0.8
3,088,466	-				-0.7
3,088,466	-				-1.0
3,088,466	-				-0.2
3,088,466	-				+1.5
3,088,466	-				-2.1
3,088,466	-				-1.0
3,088,466	-				+1.9
3,088,466	-				+0.5
3,088,466	-				-0.1
3,088,468	+				-1.9
3,088,468	+				-1.9
3,088,468	+				+0.2
3,088,468	+				+1.9
3,088,469	-				+0.0
3,088,469	-				-2.9
3,088,469	-				+1.8
3,088,469	-				-0.9
3,088,469	-				+3.0
3,088,469	-				-3.2
3,088,469	-				-0.6
3,088,469	-				+0.1
3,088,469	-				+0.3
3,088,475	+				+0.0
3,088,483	+				+1.0
3,088,483	+				-0.8
3,088,484	-				-0.9
3,088,484	-				-0.5
3,088,529	+				-0.5
3,088,530	-				+0.7
3,088,531	+				+1.0
3,088,531	+				+0.9
3,088,532	-				-0.8
3,088,532	-				-3.3
3,088,559	+				+1.1
3,088,560	-				-1.2
3,088,560	-				-1.5
3,088,560	-				+2.1
3,088,560	-				+2.1
3,088,566	+				-0.0
3,088,567	-				+0.5
3,088,580	+				+0.9
3,088,581	-				+0.0
3,088,602	+				-0.3
3,088,605	-				-0.2
3,088,619	+				+1.1
3,088,619	+				+2.8
3,088,629	+				+3.1
3,088,659	+				+0.8
3,088,659	+				-2.0
3,088,659	+				+1.1
3,088,660	-				+2.0
3,088,660	-				-2.2
3,088,700	-				-1.2
3,088,708	-				-0.9
3,088,716	+				-0.2
3,088,756	+				+0.3
3,088,756	+				+0.4
3,088,761	-				-1.0
3,088,772	+				-3.0
3,088,787	+				-1.0
3,088,787	+				+0.1
3,088,788	-				+1.2
3,088,788	-				+1.0
3,088,788	-				+1.4
3,088,790	+				+1.3
3,088,791	-				+0.3
3,088,800	-				+2.5
3,088,803	+				+0.2
3,088,804	-				+0.0
3,088,900	-				-1.1
3,088,901	+				+0.4
3,088,902	-				+0.1
3,088,908	+				-0.3
3,088,910	+				-2.3
3,088,910	+				-0.7
3,088,912	+				+0.2
3,088,912	+				-0.3
3,088,913	-				-0.2
3,088,969	-				-0.2
3,089,060	-				+0.5
3,089,223	+				+2.0