Strain Fitness in Escherichia fergusonii Becca around EFB2_01157

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
1,213,828	+		EFB2_01155	0.38	-2.0
1,213,861	-		EFB2_01155	0.42	+1.3
1,213,941	+		EFB2_01155	0.53	+2.5
1,213,942	-		EFB2_01155	0.53	-0.5
1,213,942	-		EFB2_01155	0.53	-2.0
1,213,942	-		EFB2_01155	0.53	-0.8
1,213,942	-		EFB2_01155	0.53	-0.0
1,214,051	-		EFB2_01155	0.68	+1.9
1,214,077	+		EFB2_01155	0.72	-0.5
1,214,077	+		EFB2_01155	0.72	-1.7
1,214,077	+		EFB2_01155	0.72	-0.0
1,214,078	-		EFB2_01155	0.72	+1.8
1,214,081	+		EFB2_01155	0.72	+1.0
1,214,081	+		EFB2_01155	0.72	+0.9
1,214,081	+		EFB2_01155	0.72	+0.9
1,214,082	-		EFB2_01155	0.72	+1.6
1,214,082	-		EFB2_01155	0.72	-1.3
1,214,117	+		EFB2_01155	0.77	+0.2
1,214,117	+		EFB2_01155	0.77	+2.9
1,214,117	+		EFB2_01155	0.77	+0.4
1,214,117	+		EFB2_01155	0.77	+0.7
1,214,117	+		EFB2_01155	0.77	+1.9
1,214,117	+		EFB2_01155	0.77	+1.1
1,214,117	+		EFB2_01155	0.77	+0.2
1,214,118	-		EFB2_01155	0.77	-0.7
1,214,118	-		EFB2_01155	0.77	-0.1
1,214,118	-		EFB2_01155	0.77	-0.0
1,214,118	-		EFB2_01155	0.77	+0.8
1,214,118	-		EFB2_01155	0.77	+0.9
1,214,121	+		EFB2_01155	0.78	+1.7
1,214,121	+		EFB2_01155	0.78	-0.4
1,214,127	+		EFB2_01155	0.78	+0.9
1,214,127	+		EFB2_01155	0.78	-0.2
1,214,127	+		EFB2_01155	0.78	-1.3
1,214,128	-		EFB2_01155	0.79	-0.2
1,214,128	-		EFB2_01155	0.79	+0.2
1,214,151	+		EFB2_01155	0.82	-1.7
1,214,151	+		EFB2_01155	0.82	-0.5
1,214,151	+		EFB2_01155	0.82	+1.7
1,214,151	+		EFB2_01155	0.82	+0.9
1,214,175	+		EFB2_01155	0.85	-2.8
1,214,175	+		EFB2_01155	0.85	-2.4
1,214,175	+		EFB2_01155	0.85	-0.0
1,214,175	+		EFB2_01155	0.85	-1.5
1,214,175	+		EFB2_01155	0.85	+1.0
1,214,175	+		EFB2_01155	0.85	-2.1
1,214,176	-		EFB2_01155	0.85	+1.6
1,214,179	+		EFB2_01155	0.85	+0.4
1,214,180	-		EFB2_01155	0.86	-2.4
1,214,180	-		EFB2_01155	0.86	+0.0
1,214,180	-		EFB2_01155	0.86	+1.1
1,214,198	+		EFB2_01155	0.88	-2.0
1,214,198	+		EFB2_01155	0.88	+0.0
1,214,198	+		EFB2_01155	0.88	+0.3
1,214,198	+		EFB2_01155	0.88	+0.8
1,214,198	+		EFB2_01155	0.88	+1.6
1,214,198	+		EFB2_01155	0.88	-0.8
1,214,198	+		EFB2_01155	0.88	+0.3
1,214,198	+		EFB2_01155	0.88	+1.7
1,214,198	+		EFB2_01155	0.88	-1.9
1,214,199	-		EFB2_01155	0.88	-1.7
1,214,199	-		EFB2_01155	0.88	-0.1
1,214,199	-		EFB2_01155	0.88	-1.7
1,214,199	-		EFB2_01155	0.88	+1.0
1,214,199	-		EFB2_01155	0.88	-2.5
1,214,199	-		EFB2_01155	0.88	+1.3
1,214,199	-		EFB2_01155	0.88	+0.9
1,214,199	-		EFB2_01155	0.88	+0.9
1,214,199	-		EFB2_01155	0.88	-1.2
1,214,199	-		EFB2_01155	0.88	-0.8
1,214,199	-		EFB2_01155	0.88	-0.2
1,214,199	-		EFB2_01155	0.88	+0.6
1,214,207	+		EFB2_01155	0.89	-0.9
1,214,207	+		EFB2_01155	0.89	-0.8
1,214,207	+		EFB2_01155	0.89	-0.9
1,214,273	-				-0.2
1,214,283	+				-0.1
1,214,283	+				+0.2
1,214,284	-				-3.0
1,214,287	+				+0.6
1,214,287	+				-0.5
1,214,287	+				-0.6
1,214,287	+				-0.3
1,214,288	-				-0.4
1,214,288	-				-2.6
1,214,288	-				-1.7
1,214,302	+				+0.4
1,214,361	+				+1.2
1,214,387	+				+1.1
1,214,387	+				-0.7
1,214,387	+				-1.9
1,214,387	+				-0.3
1,214,388	-				+1.8
1,214,394	+				+1.3
1,214,394	+				-0.1
1,214,394	+				-0.9
1,214,394	+				-3.8
1,214,394	+				+0.2
1,214,394	+				-1.5
1,214,395	-				-1.3
1,214,395	-				+1.3
1,214,395	-				-3.1
1,214,395	-				-0.9
1,214,395	-				-2.3
1,214,395	-				+0.5
1,214,395	-				-1.0
1,214,396	+				-1.5
1,214,396	+				+0.3
1,214,396	+				+1.5
1,214,396	+				+3.4
1,214,396	+				-2.6
1,214,396	+				-0.4
1,214,396	+				+1.6
1,214,396	+				-0.8
1,214,396	+				+0.2
1,214,396	+				+1.4
1,214,396	+				+2.0
1,214,396	+				+0.1
1,214,396	+				+0.2
1,214,396	+				-1.7
1,214,396	+				-0.5
1,214,396	+				+0.8
1,214,396	+				-0.5
1,214,396	+				+0.4
1,214,396	+				+0.8
1,214,396	+				-1.6
1,214,396	+				-1.2
1,214,396	+				+1.2
1,214,396	+				+0.7
1,214,396	+				+0.2
1,214,396	+				+0.0
1,214,396	+				-1.7
1,214,396	+				-1.0
1,214,396	+				-2.0
1,214,397	-				-0.5
1,214,397	-				-0.4
1,214,397	-				+0.3
1,214,397	-				-1.5
1,214,397	-				-2.7
1,214,397	-				-2.6
1,214,397	-				-1.7
1,214,397	-				+1.7
1,214,397	-				-3.2
1,214,397	-				+0.6
1,214,397	-				-0.4
1,214,397	-				-2.8
1,214,397	-				-0.7
1,214,397	-				+3.2
1,214,397	-				+1.5
1,214,397	-				-0.6
1,214,397	-				+1.2
1,214,397	-				+2.0
1,214,397	-				+0.5
1,214,397	-				-0.8
1,214,397	-				+0.6
1,214,397	-				-1.1
1,214,397	-				-0.3
1,214,397	-				-0.0
1,214,397	-				-2.0
1,214,397	-				-0.3
1,214,473	+				-0.6
1,214,473	+				+0.9
1,214,479	+				+0.9
1,214,479	+				-1.4
1,214,479	+				-0.8
1,214,479	+				+0.2
1,214,479	+				-0.4
1,214,480	-				+0.2
1,214,480	-				+0.1
1,214,480	-				+1.3
1,214,480	-				-0.4
1,214,506	+				-1.9
1,214,506	+				+0.0
1,214,506	+				-0.1
1,214,507	-				+0.2
1,214,507	-				+0.6
1,214,507	-				-0.1
1,214,507	-				+0.4
1,214,521	+				+0.5
1,214,521	+				+1.0
1,214,521	+				+1.0
1,214,521	+				+0.0
1,214,521	+				+0.5
1,214,521	+				+1.8
1,214,522	-				-1.1
1,214,522	-				+1.2
1,214,522	-				-1.3
1,214,522	-				-0.4
1,214,561	+				-2.6
1,214,561	+				-0.3
1,214,561	+				+0.8
1,214,562	-				+1.9
1,214,583	+		EFB2_01156	0.22	-0.5
1,214,583	+		EFB2_01156	0.22	+0.5
1,214,583	+		EFB2_01156	0.22	+2.1
1,214,583	+		EFB2_01156	0.22	+0.7
1,214,583	+		EFB2_01156	0.22	+1.2
1,214,584	-		EFB2_01156	0.23	+0.1
1,214,584	-		EFB2_01156	0.23	-0.6
1,214,593	+		EFB2_01156	0.29	+1.1
1,214,593	+		EFB2_01156	0.29	-0.9
1,214,593	+		EFB2_01156	0.29	-1.7
1,214,593	+		EFB2_01156	0.29	+0.6
1,214,593	+		EFB2_01156	0.29	+0.3
1,214,593	+		EFB2_01156	0.29	-0.9
1,214,593	+		EFB2_01156	0.29	-0.1
1,214,593	+		EFB2_01156	0.29	+0.0
1,214,593	+		EFB2_01156	0.29	-3.1
1,214,593	+		EFB2_01156	0.29	-0.5
1,214,593	+		EFB2_01156	0.29	+0.2
1,214,594	-		EFB2_01156	0.29	-1.3
1,214,594	-		EFB2_01156	0.29	-2.9
1,214,594	-		EFB2_01156	0.29	-1.2
1,214,594	-		EFB2_01156	0.29	+1.0
1,214,594	-		EFB2_01156	0.29	-0.5
1,214,594	-		EFB2_01156	0.29	+0.2
1,214,594	-		EFB2_01156	0.29	+0.2
1,214,594	-		EFB2_01156	0.29	+1.6
1,214,594	-		EFB2_01156	0.29	-0.9
1,214,594	-		EFB2_01156	0.29	+0.4
1,214,594	-		EFB2_01156	0.29	+1.6
1,214,594	-		EFB2_01156	0.29	+1.1
1,214,599	-		EFB2_01156	0.33	-2.4
1,214,620	-		EFB2_01156	0.46	-0.5
1,214,645	-		EFB2_01156	0.63	+1.4
1,214,645	-		EFB2_01156	0.63	-0.4
1,214,660	-		EFB2_01156	0.73	+1.1
1,214,660	-		EFB2_01156	0.73	+0.1
1,214,668	+		EFB2_01156	0.78	+0.4
1,214,685	-		EFB2_01156	0.89	-0.7
1,214,685	-		EFB2_01156	0.89	-1.1
1,214,699	+				-1.2
1,214,699	+				-0.5
1,214,700	-				-0.1
1,214,700	-				+0.2
1,214,700	-				-1.3
1,214,700	-				-0.3
1,214,700	-				-3.1
1,214,700	-				-0.3
1,214,715	+				-0.9
1,214,728	-				-0.5
1,214,765	+				-3.2
1,214,765	+				+0.8
1,214,766	-				-0.8
1,214,766	-				+0.7
1,214,767	+				+0.8
1,214,767	+				-1.2
1,214,768	-				-0.1
1,214,809	+				+0.5
1,214,809	+				-1.4
1,214,809	+				-0.2
1,214,810	-				-1.7
1,214,810	-				+1.2
1,214,810	-				-0.6
1,214,827	+				+0.3
1,214,827	+				-1.5
1,214,827	+				+1.9
1,214,827	+				+0.0
1,214,828	-				-0.5
1,214,828	-				+0.1
1,214,860	-				-0.6
1,214,860	-				+1.4
1,214,860	-				+0.9
1,214,874	-				-1.0
1,214,874	-				+0.9
1,214,895	+				-0.7
1,214,895	+				+2.7
1,214,895	+				+0.5
1,214,895	+				-0.4
1,214,895	+				-0.4
1,214,895	+				+0.3
1,214,895	+				-0.3
1,214,895	+				-0.4
1,214,896	-				+0.6
1,214,896	-				-1.5
1,214,896	-				+1.0
1,214,896	-				+0.1
1,214,896	-				+0.3
1,214,896	-				-0.4
1,214,896	-				-0.4
1,214,916	-				+0.8
1,214,921	+				+0.3
1,214,921	+				-1.8
1,214,921	+				+0.5
1,214,921	+				-0.7
1,214,922	-				-1.1
1,214,922	-				+1.3
1,214,922	-				-0.4
1,214,922	-				+0.1
1,214,922	-				-0.5
1,214,922	-				+0.7
1,214,943	+		EFB2_01157	0.11	-0.2
1,214,943	+		EFB2_01157	0.11	-1.5
1,214,943	+		EFB2_01157	0.11	-2.6
1,214,944	-		EFB2_01157	0.11	-1.2
1,214,944	-		EFB2_01157	0.11	+1.5
1,214,944	-		EFB2_01157	0.11	+0.4
1,214,944	-		EFB2_01157	0.11	-0.6
1,214,957	+		EFB2_01157	0.13	-0.8
1,214,957	+		EFB2_01157	0.13	+0.8
1,214,958	-		EFB2_01157	0.13	+0.4
1,214,999	-		EFB2_01157	0.17	-0.2
1,214,999	-		EFB2_01157	0.17	+0.1
1,215,008	+		EFB2_01157	0.18	+1.1
1,215,008	+		EFB2_01157	0.18	-1.6
1,215,008	+		EFB2_01157	0.18	-0.9
1,215,009	-		EFB2_01157	0.18	+0.1
1,215,027	-		EFB2_01157	0.19	+0.2
1,215,027	-		EFB2_01157	0.19	+0.2
1,215,046	-		EFB2_01157	0.21	-2.3
1,215,053	+		EFB2_01157	0.22	+0.8
1,215,054	-		EFB2_01157	0.22	+1.6
1,215,083	+		EFB2_01157	0.25	+1.0
1,215,083	+		EFB2_01157	0.25	+0.2
1,215,084	-		EFB2_01157	0.25	-0.5
1,215,084	-		EFB2_01157	0.25	-0.4
1,215,084	-		EFB2_01157	0.25	-0.5
1,215,184	-		EFB2_01157	0.34	+2.1
1,215,227	-		EFB2_01157	0.39	-2.7
1,215,227	-		EFB2_01157	0.39	-2.9
1,215,227	-		EFB2_01157	0.39	-2.0
1,215,227	-		EFB2_01157	0.39	+0.8
1,215,227	-		EFB2_01157	0.39	-0.2
1,215,234	-		EFB2_01157	0.39	-0.6
1,215,246	+		EFB2_01157	0.40	+1.5
1,215,246	+		EFB2_01157	0.40	+0.8
1,215,246	+		EFB2_01157	0.40	+0.2
1,215,246	+		EFB2_01157	0.40	-0.8
1,215,246	+		EFB2_01157	0.40	-3.1
1,215,246	+		EFB2_01157	0.40	-0.2
1,215,246	+		EFB2_01157	0.40	-0.9
1,215,246	+		EFB2_01157	0.40	-0.2
1,215,246	+		EFB2_01157	0.40	+1.4
1,215,246	+		EFB2_01157	0.40	+0.9
1,215,247	-		EFB2_01157	0.41	-0.3
1,215,247	-		EFB2_01157	0.41	+2.8
1,215,247	-		EFB2_01157	0.41	-1.0
1,215,247	-		EFB2_01157	0.41	+0.9
1,215,247	-		EFB2_01157	0.41	-0.4
1,215,247	-		EFB2_01157	0.41	-0.6
1,215,247	-		EFB2_01157	0.41	-1.7
1,215,247	-		EFB2_01157	0.41	+1.4
1,215,247	-		EFB2_01157	0.41	+0.7
1,215,252	-		EFB2_01157	0.41	-1.8
1,215,260	+		EFB2_01157	0.42	-1.9
1,215,261	-		EFB2_01157	0.42	-2.3
1,215,261	-		EFB2_01157	0.42	-0.2
1,215,309	+		EFB2_01157	0.47	+0.8
1,215,310	-		EFB2_01157	0.47	+0.5
1,215,324	+		EFB2_01157	0.48	-0.0
1,215,324	+		EFB2_01157	0.48	-1.3
1,215,325	-		EFB2_01157	0.48	-0.0
1,215,366	-		EFB2_01157	0.52	-0.4
1,215,366	-		EFB2_01157	0.52	+1.0
1,215,366	-		EFB2_01157	0.52	+0.6
1,215,366	-		EFB2_01157	0.52	+0.2
1,215,366	-		EFB2_01157	0.52	-1.1
1,215,370	+		EFB2_01157	0.52	-3.0
1,215,371	-		EFB2_01157	0.53	+0.1
1,215,371	-		EFB2_01157	0.53	-1.5
1,215,371	-		EFB2_01157	0.53	+1.1
1,215,378	-		EFB2_01157	0.53	-1.3
1,215,384	-		EFB2_01157	0.54	-0.2
1,215,420	+		EFB2_01157	0.57	-2.5
1,215,420	+		EFB2_01157	0.57	+0.1
1,215,420	+		EFB2_01157	0.57	-1.6
1,215,420	+		EFB2_01157	0.57	-0.6
1,215,421	-		EFB2_01157	0.57	+0.8
1,215,421	-		EFB2_01157	0.57	+1.4
1,215,421	-		EFB2_01157	0.57	+0.1
1,215,421	-		EFB2_01157	0.57	+0.4
1,215,421	-		EFB2_01157	0.57	+0.5
1,215,450	+		EFB2_01157	0.60	-2.0
1,215,450	+		EFB2_01157	0.60	-0.4
1,215,450	+		EFB2_01157	0.60	-1.4
1,215,450	+		EFB2_01157	0.60	+0.2
1,215,450	+		EFB2_01157	0.60	+0.9
1,215,450	+		EFB2_01157	0.60	-2.0
1,215,450	+		EFB2_01157	0.60	-1.7
1,215,450	+		EFB2_01157	0.60	+4.4
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1,215,451	-		EFB2_01157	0.60	+0.3
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1,215,502	+		EFB2_01157	0.65	-0.2
1,215,502	+		EFB2_01157	0.65	+1.0
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1,215,502	+		EFB2_01157	0.65	+1.1
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1,215,503	-		EFB2_01157	0.65	-1.1
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1,215,503	-		EFB2_01157	0.65	+0.3
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1,215,507	-		EFB2_01157	0.66	-1.1
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1,215,569	+		EFB2_01157	0.72	-2.1
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1,215,616	+		EFB2_01157	0.76	+2.4
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1,215,632	+		EFB2_01157	0.78	-2.3
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1,215,632	+		EFB2_01157	0.78	+1.2
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1,215,685	+		EFB2_01157	0.83	-2.1
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1,215,686	-		EFB2_01157	0.83	+3.2
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1,215,746	+		EFB2_01157	0.89	+2.2
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1,215,746	+		EFB2_01157	0.89	+1.9
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1,215,746	+		EFB2_01157	0.89	-1.2
1,215,746	+		EFB2_01157	0.89	-2.0
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1,215,747	-		EFB2_01157	0.89	+1.3
1,215,747	-		EFB2_01157	0.89	+2.2
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1,215,747	-		EFB2_01157	0.89	+2.2
1,215,747	-		EFB2_01157	0.89	-3.1
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1,215,747	-		EFB2_01157	0.89	-1.6
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1,215,747	-		EFB2_01157	0.89	+0.8
1,215,747	-		EFB2_01157	0.89	-2.1
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1,215,762	-				+0.2
1,215,764	+				-0.8
1,215,764	+				+1.0
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1,215,782	+				+0.9
1,215,782	+				-1.0
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1,215,783	-				+0.9
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1,215,864	-				-1.1
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1,215,874	+				-2.2
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1,215,878	+				-0.6
1,215,878	+				+1.6
1,215,878	+				-0.6
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1,215,878	+				+0.9
1,215,878	+				+1.2
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1,215,879	-				-0.1
1,215,879	-				-1.7
1,215,879	-				-0.9
1,215,879	-				-2.1
1,215,879	-				+0.2
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1,215,904	-				+0.3
1,215,904	-				-0.1
1,215,904	-				+2.1
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1,215,904	-				-3.5
1,215,906	+				+0.9
1,215,906	+				+0.1
1,215,906	+				-2.1
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1,215,907	-				+0.8
1,215,907	-				-2.0
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1,215,969	+				-2.9
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1,215,986	+				-2.3
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1,215,987	-				+2.5
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1,216,019	+				-2.2
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1,216,020	-				+1.4
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1,216,028	+				+0.3
1,216,028	+				+1.1
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1,216,029	-				+1.5
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1,216,053	+				-2.3
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1,216,361	+		EFB2_01158	0.27	-1.0
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1,216,384	+		EFB2_01158	0.30	+2.0
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