Strain Fitness in Escherichia fergusonii Becca around EFB2_02931

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
3,065,251	+				-1.6
3,065,251	+				+3.7
3,065,251	+				-0.0
3,065,252	-				-0.9
3,065,252	-				+2.1
3,065,254	+				-1.6
3,065,254	+				-0.8
3,065,255	-				-0.8
3,065,255	-				-0.5
3,065,255	-				-0.9
3,065,255	-				-1.7
3,065,255	-				+0.3
3,065,255	-				+0.4
3,065,275	+				-3.1
3,065,276	-				-0.2
3,065,298	+				+0.5
3,065,298	+				-1.8
3,065,299	-				+1.5
3,065,299	-				+0.6
3,065,299	-				+1.4
3,065,299	-				-0.7
3,065,299	-				+0.4
3,065,299	-				-0.5
3,065,299	-				-0.6
3,065,299	-				+0.1
3,065,299	-				-3.0
3,065,299	-				-0.0
3,065,299	-				-1.1
3,065,315	+				-1.4
3,065,315	+				+1.6
3,065,315	+				-0.1
3,065,315	+				+0.2
3,065,316	-				+1.4
3,065,316	-				-0.4
3,065,316	-				-0.5
3,065,316	-				-0.2
3,065,321	+				+0.4
3,065,321	+				+1.2
3,065,321	+				-0.9
3,065,321	+				-1.2
3,065,321	+				+3.9
3,065,321	+				-1.7
3,065,321	+				-0.4
3,065,322	-				-1.1
3,065,322	-				+0.4
3,065,340	-				-3.2
3,065,383	+				-1.7
3,065,383	+				-0.3
3,065,383	+				+0.4
3,065,383	+				-0.0
3,065,383	+				-0.6
3,065,383	+				-0.6
3,065,383	+				-1.0
3,065,383	+				-0.8
3,065,383	+				+0.3
3,065,383	+				+0.3
3,065,383	+				-0.3
3,065,383	+				-0.5
3,065,383	+				-2.4
3,065,383	+				-2.4
3,065,384	-				+0.5
3,065,384	-				+0.7
3,065,384	-				-1.9
3,065,384	-				-2.2
3,065,384	-				-2.8
3,065,384	-				-1.4
3,065,384	-				+2.4
3,065,384	-				-2.2
3,065,384	-				-1.2
3,065,387	+				-0.8
3,065,387	+				-1.6
3,065,387	+				+1.0
3,065,387	+				+2.5
3,065,388	-				-2.6
3,065,388	-				+1.0
3,065,388	-				-1.6
3,065,388	-				+0.3
3,065,388	-				-0.0
3,065,389	+				-2.4
3,065,390	-				-0.2
3,065,390	-				-0.1
3,065,390	-				-0.1
3,065,390	-				-0.2
3,065,403	+				-0.7
3,065,431	+		EFB2_02929	0.16	+2.5
3,065,431	+		EFB2_02929	0.16	+0.0
3,065,431	+		EFB2_02929	0.16	-1.8
3,065,431	+		EFB2_02929	0.16	-2.7
3,065,432	-		EFB2_02929	0.16	+1.5
3,065,432	-		EFB2_02929	0.16	-1.6
3,065,432	-		EFB2_02929	0.16	-1.4
3,065,432	-		EFB2_02929	0.16	+1.1
3,065,442	+		EFB2_02929	0.19	-4.2
3,065,443	-		EFB2_02929	0.20	-0.7
3,065,451	+		EFB2_02929	0.22	-0.1
3,065,452	-		EFB2_02929	0.22	+1.5
3,065,452	-		EFB2_02929	0.22	+0.2
3,065,452	-		EFB2_02929	0.22	+1.0
3,065,452	-		EFB2_02929	0.22	-3.2
3,065,452	-		EFB2_02929	0.22	+1.6
3,065,465	+		EFB2_02929	0.27	+0.3
3,065,497	+		EFB2_02929	0.37	-2.5
3,065,497	+		EFB2_02929	0.37	+0.1
3,065,497	+		EFB2_02929	0.37	-2.2
3,065,497	+		EFB2_02929	0.37	+0.6
3,065,498	-		EFB2_02929	0.37	+2.6
3,065,498	-		EFB2_02929	0.37	+0.3
3,065,541	+		EFB2_02929	0.51	-1.4
3,065,542	-		EFB2_02929	0.51	-2.3
3,065,594	-		EFB2_02929	0.68	+0.9
3,065,639	+		EFB2_02929	0.82	+0.9
3,065,639	+		EFB2_02929	0.82	-1.5
3,065,639	+		EFB2_02929	0.82	-0.1
3,065,640	-		EFB2_02929	0.83	-2.0
3,065,640	-		EFB2_02929	0.83	+0.8
3,065,640	-		EFB2_02929	0.83	-0.4
3,065,655	-		EFB2_02929	0.88	+1.5
3,065,667	+				+1.0
3,065,667	+				-3.3
3,065,667	+				-1.5
3,065,696	-				-2.2
3,065,700	+				+0.4
3,065,700	+				+0.9
3,065,700	+				-0.7
3,065,700	+				-0.4
3,065,700	+				-1.9
3,065,701	-				+1.6
3,065,715	+				+1.1
3,065,715	+				+0.5
3,065,715	+				-2.0
3,065,715	+				-0.8
3,065,716	-				+0.6
3,065,716	-				+1.5
3,065,738	-				+1.1
3,065,743	+				-2.6
3,065,743	+				+1.5
3,065,744	-				-0.2
3,065,794	-				-2.2
3,065,794	-				-1.8
3,065,850	+		EFB2_02930	0.11	-1.0
3,065,880	-		EFB2_02930	0.20	-1.5
3,065,886	+		EFB2_02930	0.22	+0.9
3,065,886	+		EFB2_02930	0.22	-0.3
3,065,887	-		EFB2_02930	0.22	+0.2
3,065,917	-		EFB2_02930	0.31	-2.0
3,065,948	+		EFB2_02930	0.40	+1.4
3,065,948	+		EFB2_02930	0.40	-2.3
3,065,948	+		EFB2_02930	0.40	-0.5
3,065,949	-		EFB2_02930	0.41	-0.0
3,065,949	-		EFB2_02930	0.41	-1.7
3,065,949	-		EFB2_02930	0.41	-1.7
3,066,018	+		EFB2_02930	0.61	-0.7
3,066,018	+		EFB2_02930	0.61	-0.7
3,066,018	+		EFB2_02930	0.61	-1.3
3,066,018	+		EFB2_02930	0.61	-2.1
3,066,019	-		EFB2_02930	0.62	+0.9
3,066,019	-		EFB2_02930	0.62	-2.4
3,066,019	-		EFB2_02930	0.62	+0.1
3,066,019	-		EFB2_02930	0.62	+4.1
3,066,024	+		EFB2_02930	0.63	-0.5
3,066,024	+		EFB2_02930	0.63	+0.3
3,066,025	-		EFB2_02930	0.63	-1.6
3,066,033	+		EFB2_02930	0.66	-1.2
3,066,033	+		EFB2_02930	0.66	-0.9
3,066,033	+		EFB2_02930	0.66	-1.4
3,066,047	+		EFB2_02930	0.70	+1.0
3,066,048	-		EFB2_02930	0.70	-2.7
3,066,048	-		EFB2_02930	0.70	-0.8
3,066,066	-		EFB2_02930	0.76	+1.1
3,066,066	-		EFB2_02930	0.76	-0.0
3,066,073	+		EFB2_02930	0.78	-2.0
3,066,073	+		EFB2_02930	0.78	-1.7
3,066,073	+		EFB2_02930	0.78	+0.4
3,066,073	+		EFB2_02930	0.78	-1.2
3,066,073	+		EFB2_02930	0.78	-0.8
3,066,073	+		EFB2_02930	0.78	-0.3
3,066,073	+		EFB2_02930	0.78	+0.2
3,066,073	+		EFB2_02930	0.78	-0.3
3,066,073	+		EFB2_02930	0.78	+1.5
3,066,073	+		EFB2_02930	0.78	-0.6
3,066,073	+		EFB2_02930	0.78	-0.0
3,066,073	+		EFB2_02930	0.78	-0.0
3,066,073	+		EFB2_02930	0.78	-1.0
3,066,073	+		EFB2_02930	0.78	+2.1
3,066,073	+		EFB2_02930	0.78	-0.8
3,066,073	+		EFB2_02930	0.78	+1.6
3,066,073	+		EFB2_02930	0.78	-1.8
3,066,073	+		EFB2_02930	0.78	-0.9
3,066,073	+		EFB2_02930	0.78	+2.0
3,066,073	+		EFB2_02930	0.78	-1.6
3,066,073	+		EFB2_02930	0.78	-1.5
3,066,073	+		EFB2_02930	0.78	+0.4
3,066,073	+		EFB2_02930	0.78	+0.3
3,066,073	+		EFB2_02930	0.78	+0.7
3,066,073	+		EFB2_02930	0.78	+1.0
3,066,073	+		EFB2_02930	0.78	+0.5
3,066,073	+		EFB2_02930	0.78	-0.0
3,066,073	+		EFB2_02930	0.78	+1.0
3,066,073	+		EFB2_02930	0.78	-1.9
3,066,073	+		EFB2_02930	0.78	+1.0
3,066,073	+		EFB2_02930	0.78	-2.0
3,066,073	+		EFB2_02930	0.78	-3.0
3,066,074	-		EFB2_02930	0.78	-0.8
3,066,074	-		EFB2_02930	0.78	-1.6
3,066,074	-		EFB2_02930	0.78	-0.6
3,066,074	-		EFB2_02930	0.78	+2.4
3,066,074	-		EFB2_02930	0.78	+1.6
3,066,074	-		EFB2_02930	0.78	-1.9
3,066,074	-		EFB2_02930	0.78	-0.6
3,066,074	-		EFB2_02930	0.78	-1.6
3,066,074	-		EFB2_02930	0.78	+0.9
3,066,074	-		EFB2_02930	0.78	+0.1
3,066,074	-		EFB2_02930	0.78	-1.6
3,066,074	-		EFB2_02930	0.78	-2.2
3,066,074	-		EFB2_02930	0.78	-1.1
3,066,074	-		EFB2_02930	0.78	-1.2
3,066,074	-		EFB2_02930	0.78	-0.0
3,066,077	+		EFB2_02930	0.79	-1.2
3,066,077	+		EFB2_02930	0.79	+1.0
3,066,077	+		EFB2_02930	0.79	-0.6
3,066,077	+		EFB2_02930	0.79	-2.3
3,066,078	-		EFB2_02930	0.79	-0.3
3,066,078	-		EFB2_02930	0.79	-0.8
3,066,078	-		EFB2_02930	0.79	-0.8
3,066,095	+		EFB2_02930	0.84	+1.3
3,066,095	+		EFB2_02930	0.84	-0.1
3,066,096	-		EFB2_02930	0.85	-2.4
3,066,096	-		EFB2_02930	0.85	+2.5
3,066,096	-		EFB2_02930	0.85	+0.2
3,066,096	-		EFB2_02930	0.85	+0.9
3,066,096	-		EFB2_02930	0.85	+2.8
3,066,098	+		EFB2_02930	0.85	+0.1
3,066,099	-		EFB2_02930	0.86	+0.4
3,066,106	-		EFB2_02930	0.88	-0.8
3,066,129	+				+0.7
3,066,129	+				-0.6
3,066,129	+				+3.3
3,066,129	+				+0.3
3,066,129	+				-0.4
3,066,129	+				+0.1
3,066,129	+				-2.8
3,066,129	+				+3.5
3,066,130	-				-0.6
3,066,130	-				-1.3
3,066,130	-				-0.3
3,066,130	-				-0.4
3,066,130	-				-1.0
3,066,133	-				+0.5
3,066,133	-				-0.8
3,066,136	-				+0.1
3,066,146	+				+1.7
3,066,146	+				-2.1
3,066,192	+				-2.7
3,066,192	+				-0.0
3,066,193	-				+0.7
3,066,203	+				-2.6
3,066,203	+				-1.8
3,066,203	+				+0.5
3,066,203	+				+2.7
3,066,203	+				+1.5
3,066,203	+				+0.3
3,066,203	+				+1.3
3,066,203	+				+0.5
3,066,203	+				-0.7
3,066,203	+				+3.4
3,066,203	+				-1.6
3,066,203	+				-0.0
3,066,203	+				+0.8
3,066,203	+				-0.5
3,066,203	+				+0.1
3,066,204	-				-0.2
3,066,204	-				-0.3
3,066,204	-				+0.3
3,066,204	-				-1.8
3,066,204	-				+0.6
3,066,204	-				+2.5
3,066,204	-				-2.8
3,066,204	-				-1.7
3,066,204	-				-0.1
3,066,204	-				-2.0
3,066,204	-				-1.8
3,066,204	-				-2.2
3,066,204	-				-2.3
3,066,204	-				+1.5
3,066,204	-				+1.2
3,066,204	-				-1.0
3,066,204	-				+1.0
3,066,204	-				-0.1
3,066,204	-				+1.5
3,066,204	-				+1.1
3,066,204	-				+0.1
3,066,204	-				-1.1
3,066,204	-				+0.8
3,066,204	-				+0.2
3,066,204	-				+0.0
3,066,204	-				-0.0
3,066,204	-				+1.2
3,066,204	-				+0.3
3,066,204	-				-2.7
3,066,204	-				+1.6
3,066,206	+				+2.5
3,066,206	+				-0.5
3,066,206	+				+0.2
3,066,206	+				-1.9
3,066,206	+				-2.8
3,066,206	+				+1.6
3,066,206	+				-1.5
3,066,206	+				+1.5
3,066,206	+				-2.3
3,066,206	+				+0.1
3,066,207	-				-0.3
3,066,207	-				-0.1
3,066,207	-				+3.7
3,066,207	-				-0.3
3,066,207	-				-0.4
3,066,207	-				-0.4
3,066,209	+				-1.6
3,066,210	-				-1.9
3,066,210	-				+0.9
3,066,231	+				-1.6
3,066,267	+		EFB2_02931	0.14	+0.9
3,066,267	+		EFB2_02931	0.14	-1.9
3,066,268	-		EFB2_02931	0.14	+1.4
3,066,268	-		EFB2_02931	0.14	+0.3
3,066,268	-		EFB2_02931	0.14	+1.2
3,066,316	-		EFB2_02931	0.24	-1.1
3,066,324	+		EFB2_02931	0.26	-0.1
3,066,324	+		EFB2_02931	0.26	+1.4
3,066,324	+		EFB2_02931	0.26	-0.9
3,066,324	+		EFB2_02931	0.26	-0.5
3,066,325	-		EFB2_02931	0.26	+0.8
3,066,325	-		EFB2_02931	0.26	-0.5
3,066,325	-		EFB2_02931	0.26	+1.0
3,066,325	-		EFB2_02931	0.26	-3.0
3,066,325	-		EFB2_02931	0.26	-0.7
3,066,325	-		EFB2_02931	0.26	-2.7
3,066,325	-		EFB2_02931	0.26	-2.6
3,066,325	-		EFB2_02931	0.26	-0.9
3,066,325	-		EFB2_02931	0.26	+0.4
3,066,327	+		EFB2_02931	0.27	-2.0
3,066,327	+		EFB2_02931	0.27	-1.7
3,066,328	-		EFB2_02931	0.27	+0.3
3,066,328	-		EFB2_02931	0.27	-0.6
3,066,328	-		EFB2_02931	0.27	-1.1
3,066,328	-		EFB2_02931	0.27	+1.4
3,066,328	-		EFB2_02931	0.27	+1.8
3,066,328	-		EFB2_02931	0.27	+0.3
3,066,328	-		EFB2_02931	0.27	-0.1
3,066,328	-		EFB2_02931	0.27	-1.9
3,066,328	-		EFB2_02931	0.27	+0.7
3,066,328	-		EFB2_02931	0.27	-3.0
3,066,328	-		EFB2_02931	0.27	+0.3
3,066,357	+		EFB2_02931	0.33	-0.7
3,066,358	-		EFB2_02931	0.34	+0.5
3,066,358	-		EFB2_02931	0.34	+1.2
3,066,468	+		EFB2_02931	0.58	+4.9
3,066,468	+		EFB2_02931	0.58	+1.3
3,066,468	+		EFB2_02931	0.58	-0.6
3,066,469	-		EFB2_02931	0.58	-2.8
3,066,512	+		EFB2_02931	0.67	-0.1
3,066,513	-		EFB2_02931	0.68	-2.6
3,066,518	+		EFB2_02931	0.69	+0.9
3,066,519	-		EFB2_02931	0.69	+1.7
3,066,519	-		EFB2_02931	0.69	-3.9
3,066,519	-		EFB2_02931	0.69	+0.7
3,066,550	-		EFB2_02931	0.76	-2.2
3,066,550	-		EFB2_02931	0.76	-0.3
3,066,623	-				+0.8
3,066,623	-				+1.1
3,066,663	-				-2.0
3,066,663	-				+1.4
3,066,685	-				-0.5
3,066,702	+				-2.6
3,066,721	+				-0.9
3,066,722	-				+0.3
3,066,746	+				-0.6
3,066,771	+		EFB2_02932	0.15	-1.7
3,066,771	+		EFB2_02932	0.15	+0.8
3,066,771	+		EFB2_02932	0.15	+1.9
3,066,772	-		EFB2_02932	0.16	-1.7
3,066,772	-		EFB2_02932	0.16	+0.5
3,066,772	-		EFB2_02932	0.16	-1.8
3,066,772	-		EFB2_02932	0.16	+0.2
3,066,779	-		EFB2_02932	0.17	+0.8
3,066,782	-		EFB2_02932	0.18	-0.1
3,066,782	-		EFB2_02932	0.18	-2.5
3,066,791	-		EFB2_02932	0.20	-0.4
3,066,823	+		EFB2_02932	0.27	+1.0
3,066,824	-		EFB2_02932	0.27	+1.0
3,066,826	+		EFB2_02932	0.27	-0.9
3,066,827	-		EFB2_02932	0.28	-0.8
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