Strain Fitness in Escherichia fergusonii Becca around EFB2_02366

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,499,803	-		EFB2_02364	0.47	-2.3
2,499,803	-		EFB2_02364	0.47	-2.7
2,499,844	-		EFB2_02364	0.54	-0.9
2,499,951	-		EFB2_02364	0.72	-1.6
2,500,101	+				+2.2
2,500,112	-				+0.8
2,500,112	-				+0.3
2,500,112	-				+1.4
2,500,131	-				-2.4
2,500,140	-				-0.9
2,500,154	+				+0.7
2,500,154	+				-1.2
2,500,154	+				+1.7
2,500,155	-				-4.2
2,500,155	-				-1.6
2,500,155	-				-2.9
2,500,155	-				-1.3
2,500,171	-		EFB2_02365	0.10	+0.0
2,500,171	-		EFB2_02365	0.10	-2.8
2,500,171	-		EFB2_02365	0.10	-1.4
2,500,285	+		EFB2_02365	0.30	-1.2
2,500,285	+		EFB2_02365	0.30	-0.6
2,500,359	-		EFB2_02365	0.43	-1.0
2,500,359	-		EFB2_02365	0.43	-3.5
2,500,359	-		EFB2_02365	0.43	-0.1
2,500,364	+		EFB2_02365	0.44	+0.2
2,500,365	-		EFB2_02365	0.44	-1.8
2,500,394	-		EFB2_02365	0.49	-1.4
2,500,399	-		EFB2_02365	0.50	-1.1
2,500,399	-		EFB2_02365	0.50	-1.6
2,500,399	-		EFB2_02365	0.50	+0.1
2,500,480	+		EFB2_02365	0.64	-2.2
2,500,480	+		EFB2_02365	0.64	-0.6
2,500,480	+		EFB2_02365	0.64	-0.9
2,500,481	-		EFB2_02365	0.64	-0.4
2,500,481	-		EFB2_02365	0.64	-0.8
2,500,481	-		EFB2_02365	0.64	-2.1
2,500,481	-		EFB2_02365	0.64	-0.4
2,500,481	-		EFB2_02365	0.64	-3.2
2,500,481	-		EFB2_02365	0.64	-0.6
2,500,481	-		EFB2_02365	0.64	+3.3
2,500,481	-		EFB2_02365	0.64	+0.2
2,500,481	-		EFB2_02365	0.64	-1.2
2,500,481	-		EFB2_02365	0.64	+2.8
2,500,481	-		EFB2_02365	0.64	+0.7
2,500,481	-		EFB2_02365	0.64	-0.3
2,500,482	+		EFB2_02365	0.64	-0.9
2,500,483	-		EFB2_02365	0.64	-0.8
2,500,483	-		EFB2_02365	0.64	-2.1
2,500,483	-		EFB2_02365	0.64	-1.4
2,500,483	-		EFB2_02365	0.64	+1.4
2,500,483	-		EFB2_02365	0.64	+1.6
2,500,490	+		EFB2_02365	0.65	-2.1
2,500,491	-		EFB2_02365	0.65	-0.2
2,500,491	-		EFB2_02365	0.65	-2.8
2,500,491	-		EFB2_02365	0.65	+0.2
2,500,491	-		EFB2_02365	0.65	-2.2
2,500,532	+		EFB2_02365	0.73	-0.4
2,500,533	-		EFB2_02365	0.73	-2.0
2,500,533	-		EFB2_02365	0.73	-3.0
2,500,533	-		EFB2_02365	0.73	+0.0
2,500,608	-		EFB2_02365	0.86	-1.2
2,500,639	-				-3.0
2,500,646	+				-1.3
2,500,646	+				+0.9
2,500,646	+				-1.7
2,500,647	-				+0.1
2,500,647	-				-0.9
2,500,656	+				+0.8
2,500,657	-				-1.8
2,500,657	-				-1.5
2,500,674	+				-0.2
2,500,675	-				+0.2
2,500,675	-				+0.0
2,500,681	+				+1.5
2,500,681	+				-1.2
2,500,682	-				+0.8
2,500,682	-				-2.3
2,500,720	-				+1.9
2,500,754	+				+1.0
2,500,755	-				+1.2
2,500,755	-				-2.9
2,500,760	+				-2.2
2,500,760	+				-1.8
2,500,760	+				+0.2
2,500,760	+				+1.2
2,500,760	+				+2.7
2,500,760	+				-1.0
2,500,761	-				+0.4
2,500,761	-				-2.1
2,500,761	-				+0.6
2,500,761	-				+0.2
2,500,761	-				-0.3
2,500,761	-				+0.1
2,500,761	-				-1.9
2,500,766	+				+1.5
2,500,766	+				+3.0
2,500,767	-				+2.0
2,500,767	-				-0.4
2,500,767	-				-2.5
2,500,767	-				-2.2
2,500,770	-				+1.0
2,500,814	+		EFB2_02366	0.10	+1.7
2,500,845	+		EFB2_02366	0.17	+1.3
2,500,845	+		EFB2_02366	0.17	+0.5
2,500,845	+		EFB2_02366	0.17	-0.1
2,500,845	+		EFB2_02366	0.17	+1.0
2,500,845	+		EFB2_02366	0.17	+1.0
2,500,845	+		EFB2_02366	0.17	+1.8
2,500,846	-		EFB2_02366	0.18	-2.2
2,500,846	-		EFB2_02366	0.18	-1.0
2,500,846	-		EFB2_02366	0.18	+0.4
2,500,846	-		EFB2_02366	0.18	-0.6
2,500,846	-		EFB2_02366	0.18	+0.4
2,500,868	-		EFB2_02366	0.23	+0.0
2,500,880	-		EFB2_02366	0.25	-2.9
2,500,880	-		EFB2_02366	0.25	-1.4
2,500,923	+		EFB2_02366	0.35	-1.1
2,500,923	+		EFB2_02366	0.35	-0.7
2,500,923	+		EFB2_02366	0.35	+1.3
2,500,923	+		EFB2_02366	0.35	-0.4
2,500,924	-		EFB2_02366	0.35	-2.5
2,500,924	-		EFB2_02366	0.35	+0.8
2,500,935	+		EFB2_02366	0.38	-1.7
2,500,935	+		EFB2_02366	0.38	-0.0
2,500,935	+		EFB2_02366	0.38	-0.9
2,500,936	-		EFB2_02366	0.38	+1.0
2,500,936	-		EFB2_02366	0.38	+1.8
2,500,936	-		EFB2_02366	0.38	-0.3
2,500,936	-		EFB2_02366	0.38	+2.5
2,500,936	-		EFB2_02366	0.38	-2.1
2,500,936	-		EFB2_02366	0.38	-1.8
2,500,938	+		EFB2_02366	0.39	+0.8
2,500,938	+		EFB2_02366	0.39	-0.1
2,500,938	+		EFB2_02366	0.39	+0.1
2,500,938	+		EFB2_02366	0.39	+0.2
2,500,938	+		EFB2_02366	0.39	-0.7
2,500,939	-		EFB2_02366	0.39	-2.2
2,500,939	-		EFB2_02366	0.39	+1.1
2,500,939	-		EFB2_02366	0.39	+1.0
2,500,939	-		EFB2_02366	0.39	-2.7
2,500,939	-		EFB2_02366	0.39	+0.0
2,500,939	-		EFB2_02366	0.39	-0.5
2,500,939	-		EFB2_02366	0.39	+2.5
2,500,939	-		EFB2_02366	0.39	+1.7
2,500,940	+		EFB2_02366	0.39	-0.9
2,500,940	+		EFB2_02366	0.39	+0.4
2,500,940	+		EFB2_02366	0.39	-0.0
2,500,940	+		EFB2_02366	0.39	-0.8
2,500,940	+		EFB2_02366	0.39	+0.1
2,500,940	+		EFB2_02366	0.39	+2.3
2,500,941	-		EFB2_02366	0.39	+0.8
2,500,941	-		EFB2_02366	0.39	+1.4
2,500,941	-		EFB2_02366	0.39	+0.9
2,500,941	-		EFB2_02366	0.39	+0.5
2,500,941	-		EFB2_02366	0.39	-0.7
2,500,941	-		EFB2_02366	0.39	+0.3
2,500,941	-		EFB2_02366	0.39	+1.6
2,500,941	-		EFB2_02366	0.39	-1.5
2,500,941	-		EFB2_02366	0.39	-1.1
2,500,941	-		EFB2_02366	0.39	-1.9
2,500,941	-		EFB2_02366	0.39	-0.4
2,500,941	-		EFB2_02366	0.39	-1.4
2,500,947	+		EFB2_02366	0.41	+1.8
2,500,997	+		EFB2_02366	0.52	-0.6
2,500,998	-		EFB2_02366	0.52	-1.3
2,500,998	-		EFB2_02366	0.52	-1.8
2,500,998	-		EFB2_02366	0.52	+0.4
2,500,998	-		EFB2_02366	0.52	+0.4
2,500,998	-		EFB2_02366	0.52	-3.0
2,500,998	-		EFB2_02366	0.52	+0.4
2,500,998	-		EFB2_02366	0.52	+1.4
2,501,000	+		EFB2_02366	0.53	-1.0
2,501,000	+		EFB2_02366	0.53	-0.0
2,501,000	+		EFB2_02366	0.53	-2.0
2,501,000	+		EFB2_02366	0.53	-0.0
2,501,001	-		EFB2_02366	0.53	+2.0
2,501,001	-		EFB2_02366	0.53	-0.7
2,501,001	-		EFB2_02366	0.53	-0.0
2,501,020	-		EFB2_02366	0.57	-2.0
2,501,022	+		EFB2_02366	0.58	-0.0
2,501,022	+		EFB2_02366	0.58	-0.2
2,501,023	-		EFB2_02366	0.58	+0.4
2,501,023	-		EFB2_02366	0.58	-1.3
2,501,023	-		EFB2_02366	0.58	-1.6
2,501,023	-		EFB2_02366	0.58	-2.7
2,501,023	-		EFB2_02366	0.58	-0.2
2,501,096	-		EFB2_02366	0.74	+0.2
2,501,108	+		EFB2_02366	0.77	-0.3
2,501,108	+		EFB2_02366	0.77	-1.2
2,501,108	+		EFB2_02366	0.77	-0.5
2,501,109	-		EFB2_02366	0.77	+1.7
2,501,109	-		EFB2_02366	0.77	+1.2
2,501,109	-		EFB2_02366	0.77	-0.9
2,501,109	-		EFB2_02366	0.77	+1.9
2,501,130	+		EFB2_02366	0.82	-1.6
2,501,130	+		EFB2_02366	0.82	-0.6
2,501,131	-		EFB2_02366	0.82	+0.2
2,501,131	-		EFB2_02366	0.82	-1.9
2,501,147	-		EFB2_02366	0.86	-1.5
2,501,184	+				-0.2
2,501,184	+				+2.9
2,501,185	-				-0.6
2,501,185	-				-2.1
2,501,185	-				-0.1
2,501,185	-				+0.7
2,501,185	-				+0.0
2,501,185	-				+0.2
2,501,185	-				+1.2
2,501,185	-				-0.2
2,501,208	+				-0.4
2,501,208	+				-0.9
2,501,208	+				+2.1
2,501,208	+				-1.1
2,501,208	+				+0.3
2,501,208	+				+1.3
2,501,208	+				+1.1
2,501,208	+				-1.3
2,501,208	+				-0.1
2,501,208	+				+2.0
2,501,208	+				+1.4
2,501,209	-				+2.1
2,501,209	-				+0.1
2,501,209	-				+0.5
2,501,209	-				+2.6
2,501,209	-				-0.4
2,501,209	-				-0.1
2,501,209	-				-3.3
2,501,209	-				-2.8
2,501,209	-				+0.5
2,501,209	-				-0.7
2,501,209	-				+2.4
2,501,209	-				-2.3
2,501,209	-				-0.9
2,501,209	-				+1.3
2,501,223	-				+0.1
2,501,251	-				-2.1
2,501,259	+				+2.4
2,501,262	+				+1.5
2,501,262	+				+1.0
2,501,262	+				+1.2
2,501,263	-				-1.2
2,501,263	-				-0.5
2,501,263	-				-1.3
2,501,263	-				+0.9
2,501,263	-				-1.6
2,501,263	-				+1.0
2,501,263	-				-2.7
2,501,263	-				+0.4
2,501,263	-				-2.3
2,501,263	-				-0.7
2,501,263	-				-0.9
2,501,263	-				+2.1
2,501,263	-				+0.5
2,501,263	-				+2.4
2,501,264	+				-0.6
2,501,265	-				-1.7
2,501,265	-				-0.9
2,501,273	+				-0.2
2,501,273	+				+0.9
2,501,274	-				-0.9
2,501,304	+				-1.8
2,501,304	+				-1.7
2,501,304	+				-2.2
2,501,305	-				-0.4
2,501,305	-				+0.9
2,501,305	-				-2.4
2,501,305	-				+2.1
2,501,305	-				-2.4
2,501,305	-				+2.3
2,501,305	-				-1.6
2,501,391	+		EFB2_02367	0.45	+0.8
2,501,391	+		EFB2_02367	0.45	+0.8
2,501,391	+		EFB2_02367	0.45	+0.3
2,501,391	+		EFB2_02367	0.45	-1.1
2,501,391	+		EFB2_02367	0.45	-1.6
2,501,392	-		EFB2_02367	0.45	+0.9
2,501,392	-		EFB2_02367	0.45	+0.1
2,501,392	-		EFB2_02367	0.45	-0.0
2,501,392	-		EFB2_02367	0.45	-2.6
2,501,392	-		EFB2_02367	0.45	-0.9
2,501,392	-		EFB2_02367	0.45	-0.5
2,501,392	-		EFB2_02367	0.45	+0.8
2,501,392	-		EFB2_02367	0.45	+2.3
2,501,392	-		EFB2_02367	0.45	-0.4
2,501,392	-		EFB2_02367	0.45	+0.1
2,501,392	-		EFB2_02367	0.45	-0.0
2,501,395	+		EFB2_02367	0.47	-1.8
2,501,395	+		EFB2_02367	0.47	-0.9
2,501,395	+		EFB2_02367	0.47	-1.5
2,501,395	+		EFB2_02367	0.47	-1.7
2,501,395	+		EFB2_02367	0.47	+0.2
2,501,395	+		EFB2_02367	0.47	-1.1
2,501,395	+		EFB2_02367	0.47	-2.4
2,501,395	+		EFB2_02367	0.47	-1.8
2,501,395	+		EFB2_02367	0.47	+2.4
2,501,396	-		EFB2_02367	0.47	-2.1
2,501,396	-		EFB2_02367	0.47	-0.2
2,501,396	-		EFB2_02367	0.47	-0.6
2,501,396	-		EFB2_02367	0.47	+1.2
2,501,396	-		EFB2_02367	0.47	+0.2
2,501,396	-		EFB2_02367	0.47	+2.8
2,501,396	-		EFB2_02367	0.47	-0.0
2,501,396	-		EFB2_02367	0.47	+0.2
2,501,396	-		EFB2_02367	0.47	-1.4
2,501,427	+		EFB2_02367	0.62	+1.1
2,501,427	+		EFB2_02367	0.62	-1.2
2,501,427	+		EFB2_02367	0.62	-0.0
2,501,427	+		EFB2_02367	0.62	-1.1
2,501,428	-		EFB2_02367	0.62	-0.2
2,501,428	-		EFB2_02367	0.62	-0.7
2,501,428	-		EFB2_02367	0.62	+0.2
2,501,428	-		EFB2_02367	0.62	-0.4
2,501,431	+		EFB2_02367	0.63	+1.2
2,501,431	+		EFB2_02367	0.63	-1.6
2,501,431	+		EFB2_02367	0.63	+2.4
2,501,431	+		EFB2_02367	0.63	-3.3
2,501,432	-		EFB2_02367	0.64	-2.0
2,501,432	-		EFB2_02367	0.64	+0.6
2,501,432	-		EFB2_02367	0.64	+0.2
2,501,432	-		EFB2_02367	0.64	-1.9
2,501,490	-				+0.9
2,501,490	-				-0.9
2,501,490	-				+2.6
2,501,493	+				+0.8
2,501,494	-				-0.8
2,501,494	-				+0.4
2,501,509	+				-2.8
2,501,509	+				-1.0
2,501,510	-				+0.7
2,501,521	-				-0.9
2,501,526	-				-0.7
2,501,533	-				-1.1
2,501,533	-				-1.1
2,501,543	+				+1.0
2,501,543	+				+1.6
2,501,543	+				-0.6
2,501,544	-				+0.1
2,501,544	-				+0.6
2,501,544	-				-0.1
2,501,544	-				+0.2
2,501,547	+				-1.9
2,501,547	+				-0.4
2,501,548	-				+0.5
2,501,550	+				-0.2
2,501,551	-				-1.5
2,501,551	-				+0.3
2,501,551	-				+0.3
2,501,553	+				+1.1
2,501,553	+				-0.4
2,501,553	+				-0.9
2,501,553	+				-1.5
2,501,595	+				+1.8
2,501,595	+				-1.3
2,501,595	+				+1.0
2,501,596	-				-0.6
2,501,596	-				-0.2
2,501,596	-				+1.6
2,501,596	-				-1.2
2,501,601	-				+0.8
2,501,603	+				-0.2
2,501,604	-				+1.0
2,501,625	-				-1.1
2,501,666	+				+2.1
2,501,667	-				-0.6
2,501,667	-				+1.6
2,501,667	-				-1.9
2,501,667	-				-0.8
2,501,670	-				-0.0
2,501,704	-				-1.0
2,501,704	-				-0.0
2,501,704	-				-2.0
2,501,706	+				-1.5
2,501,706	+				-2.0
2,501,707	-				-1.8
2,501,720	-				-2.0
2,501,720	-				+1.1
2,501,720	-				+1.7
2,501,783	+				-1.1
2,501,783	+				-1.1
2,501,783	+				+1.2
2,501,783	+				-1.7
2,501,783	+				-1.0
2,501,783	+				-0.8
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