Strain Fitness in Escherichia fergusonii Becca around EFB2_02116

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
2,262,658	+				+0.8
2,262,659	-				+2.1
2,262,666	+				-1.4
2,262,666	+				+1.5
2,262,666	+				-2.1
2,262,674	+				-1.6
2,262,675	-				+1.5
2,262,690	+				-1.4
2,262,747	+		EFB2_02114	0.42	+1.0
2,262,748	-		EFB2_02114	0.43	+3.3
2,262,748	-		EFB2_02114	0.43	-0.9
2,262,748	-		EFB2_02114	0.43	+0.6
2,262,749	+		EFB2_02114	0.44	+4.3
2,262,749	+		EFB2_02114	0.44	-0.8
2,262,749	+		EFB2_02114	0.44	+0.3
2,262,749	+		EFB2_02114	0.44	+1.4
2,262,749	+		EFB2_02114	0.44	+2.5
2,262,749	+		EFB2_02114	0.44	-2.7
2,262,749	+		EFB2_02114	0.44	+0.5
2,262,749	+		EFB2_02114	0.44	-0.6
2,262,749	+		EFB2_02114	0.44	-2.2
2,262,750	-		EFB2_02114	0.44	-1.5
2,262,750	-		EFB2_02114	0.44	+0.8
2,262,750	-		EFB2_02114	0.44	-0.5
2,262,750	-		EFB2_02114	0.44	+0.1
2,262,750	-		EFB2_02114	0.44	-0.2
2,262,750	-		EFB2_02114	0.44	-0.7
2,262,750	-		EFB2_02114	0.44	+2.7
2,262,796	+		EFB2_02114	0.75	-0.3
2,262,796	+		EFB2_02114	0.75	+1.3
2,262,796	+		EFB2_02114	0.75	+2.4
2,262,796	+		EFB2_02114	0.75	-0.1
2,262,796	+		EFB2_02114	0.75	+0.6
2,262,797	-		EFB2_02114	0.75	+0.6
2,262,797	-		EFB2_02114	0.75	+1.9
2,262,797	-		EFB2_02114	0.75	-1.5
2,262,797	-		EFB2_02114	0.75	-2.9
2,262,797	-		EFB2_02114	0.75	+0.2
2,262,825	+				+1.0
2,262,826	-				-1.5
2,262,828	+				+1.5
2,262,828	+				-2.3
2,262,828	+				+0.4
2,262,828	+				+1.3
2,262,828	+				-1.2
2,262,828	+				+0.4
2,262,829	-				-2.5
2,262,829	-				-0.1
2,262,829	-				+0.1
2,262,876	+				-1.9
2,262,876	+				-2.6
2,262,877	-				-0.0
2,262,877	-				-0.6
2,262,877	-				+0.1
2,262,880	+				+0.4
2,262,880	+				+0.4
2,262,880	+				+0.7
2,262,880	+				+1.3
2,262,881	-				-1.4
2,262,881	-				-1.1
2,262,881	-				+0.5
2,262,881	-				-0.7
2,262,892	+				-0.5
2,262,892	+				-0.5
2,262,893	-				+0.5
2,262,893	-				+1.2
2,262,893	-				+1.4
2,262,920	+				+2.0
2,262,920	+				-2.1
2,262,920	+				+0.4
2,262,920	+				+2.2
2,262,920	+				-1.6
2,262,921	-				-2.6
2,262,921	-				-0.6
2,262,921	-				+1.6
2,262,937	-				+0.4
2,262,937	-				+2.4
2,262,937	-				-3.4
2,262,937	-				-2.5
2,262,937	-				-0.2
2,262,940	+				-0.7
2,262,940	+				+0.4
2,262,940	+				+0.1
2,262,940	+				-1.7
2,262,940	+				+1.7
2,262,941	-				+1.6
2,262,941	-				-0.1
2,262,941	-				-2.6
2,262,941	-				-3.1
2,262,941	-				+0.9
2,262,941	-				+0.7
2,262,941	-				+0.8
2,262,941	-				-0.9
2,262,962	-				+0.7
2,262,971	+				-2.9
2,262,971	+				-0.7
2,262,971	+				-0.9
2,262,971	+				+0.4
2,262,971	+				+1.5
2,262,972	-				-2.6
2,262,972	-				+0.0
2,262,972	-				-1.3
2,263,008	+				-1.1
2,263,009	-				-2.2
2,263,014	+				+2.7
2,263,014	+				+0.4
2,263,014	+				+0.9
2,263,014	+				+1.0
2,263,014	+				-0.6
2,263,015	-				+1.0
2,263,015	-				-0.3
2,263,015	-				+0.1
2,263,015	-				+1.5
2,263,015	-				+0.9
2,263,072	+				-0.6
2,263,072	+				+0.0
2,263,072	+				-2.0
2,263,072	+				+2.4
2,263,072	+				-0.6
2,263,072	+				-0.8
2,263,072	+				-1.6
2,263,072	+				+0.3
2,263,073	-				+1.5
2,263,073	-				+0.5
2,263,073	-				+1.5
2,263,084	-				+0.3
2,263,119	-				-0.5
2,263,119	-				-1.1
2,263,119	-				+1.4
2,263,119	-				-2.5
2,263,119	-				+0.9
2,263,119	-				-0.1
2,263,121	+				+0.7
2,263,121	+				-1.2
2,263,121	+				-1.5
2,263,122	-				+2.0
2,263,122	-				-0.9
2,263,122	-				-1.2
2,263,122	-				-3.8
2,263,122	-				+1.0
2,263,122	-				-1.7
2,263,122	-				-0.7
2,263,122	-				+0.9
2,263,122	-				+1.8
2,263,122	-				-0.4
2,263,141	+				+0.3
2,263,142	-				+2.9
2,263,142	-				-1.5
2,263,142	-				+0.6
2,263,158	-				-0.8
2,263,158	-				-4.3
2,263,158	-				-3.3
2,263,158	-				-2.3
2,263,158	-				-3.9
2,263,158	-				-1.2
2,263,721	-		EFB2_02116	0.27	-0.4
2,263,721	-		EFB2_02116	0.27	+2.1
2,263,721	-		EFB2_02116	0.27	-1.0
2,263,730	-		EFB2_02116	0.30	+2.2
2,263,730	-		EFB2_02116	0.30	+0.4
2,263,730	-		EFB2_02116	0.30	-1.5
2,263,750	-		EFB2_02116	0.39	-0.2
2,263,778	-		EFB2_02116	0.50	-0.1
2,263,778	-		EFB2_02116	0.50	+2.7
2,263,803	-		EFB2_02116	0.60	-0.1
2,263,803	-		EFB2_02116	0.60	-0.1
2,263,803	-		EFB2_02116	0.60	-2.7
2,263,803	-		EFB2_02116	0.60	+1.5
2,263,844	-		EFB2_02116	0.77	-0.5
2,263,844	-		EFB2_02116	0.77	+1.5
2,263,844	-		EFB2_02116	0.77	+1.5
2,263,844	-		EFB2_02116	0.77	+1.6
2,263,844	-		EFB2_02116	0.77	-0.1
2,263,860	-		EFB2_02116	0.84	+0.2
2,263,860	-		EFB2_02116	0.84	+1.4
2,263,860	-		EFB2_02116	0.84	+1.1
2,263,866	-		EFB2_02116	0.86	-0.3
2,263,866	-		EFB2_02116	0.86	-0.3
2,263,880	-				+0.5
2,263,880	-				-2.0
2,263,880	-				-2.3
2,263,880	-				+0.6
2,263,880	-				+1.4
2,263,880	-				+1.5
2,263,880	-				+0.5
2,263,880	-				+0.8
2,263,880	-				-0.9
2,263,880	-				-1.3
2,263,880	-				+1.7
2,263,880	-				-1.7
2,263,880	-				+1.3
2,263,979	-		EFB2_02117	0.20	+3.0
2,263,979	-		EFB2_02117	0.20	-1.7
2,263,989	-		EFB2_02117	0.22	-0.4
2,264,022	+		EFB2_02117	0.30	+2.7
2,264,023	-		EFB2_02117	0.30	+0.8
2,264,023	-		EFB2_02117	0.30	-1.4
2,264,023	-		EFB2_02117	0.30	-1.6
2,264,023	-		EFB2_02117	0.30	-1.1
2,264,054	-		EFB2_02117	0.38	-2.4
2,264,054	-		EFB2_02117	0.38	+0.4
2,264,054	-		EFB2_02117	0.38	+2.0
2,264,054	-		EFB2_02117	0.38	-1.9
2,264,054	-		EFB2_02117	0.38	-2.6
2,264,054	-		EFB2_02117	0.38	+0.7
2,264,054	-		EFB2_02117	0.38	-0.3
2,264,054	-		EFB2_02117	0.38	+0.3
2,264,054	-		EFB2_02117	0.38	-0.6
2,264,054	-		EFB2_02117	0.38	-1.1
2,264,058	-		EFB2_02117	0.39	+1.4
2,264,058	-		EFB2_02117	0.39	+0.9
2,264,058	-		EFB2_02117	0.39	-1.7
2,264,058	-		EFB2_02117	0.39	-0.9
2,264,058	-		EFB2_02117	0.39	+0.8
2,264,194	-		EFB2_02117	0.71	+1.6
2,264,308	-				-0.4
2,264,358	+				-0.6
2,264,359	-				+1.1
2,264,359	-				+0.6
2,264,359	-				+1.3
2,264,359	-				+0.8
2,264,359	-				+3.7
2,264,364	+				-0.4
2,264,364	+				-0.0
2,264,364	+				+2.4
2,264,364	+				-1.7
2,264,365	-				-1.5
2,264,365	-				+3.9
2,264,380	-				+0.7
2,264,380	-				+0.4
2,264,380	-				-0.7
2,264,380	-				-1.0
2,264,424	+				+0.5
2,264,424	+				-2.4
2,264,424	+				+0.7
2,264,424	+				-2.5
2,264,424	+				-0.1
2,264,425	-				-1.7
2,264,427	+				+1.6
2,264,427	+				+0.1
2,264,447	+				+3.3
2,264,492	+		EFB2_02118	0.12	-0.3
2,264,503	-		EFB2_02118	0.14	-1.3
2,264,538	-		EFB2_02118	0.18	-1.4
2,264,556	+		EFB2_02118	0.20	+0.1
2,264,585	+		EFB2_02118	0.24	-1.7
2,264,585	+		EFB2_02118	0.24	-2.0
2,264,585	+		EFB2_02118	0.24	-1.3
2,264,586	-		EFB2_02118	0.24	+0.7
2,264,586	-		EFB2_02118	0.24	+0.7
2,264,586	-		EFB2_02118	0.24	-0.5
2,264,586	-		EFB2_02118	0.24	+0.7
2,264,586	-		EFB2_02118	0.24	+0.4
2,264,586	-		EFB2_02118	0.24	+1.1
2,264,601	+		EFB2_02118	0.26	+0.9
2,264,602	-		EFB2_02118	0.26	+2.1
2,264,673	+		EFB2_02118	0.35	+1.0
2,264,826	+		EFB2_02118	0.55	-2.4
2,264,826	+		EFB2_02118	0.55	-2.3
2,264,826	+		EFB2_02118	0.55	+0.7
2,264,826	+		EFB2_02118	0.55	-1.4
2,264,826	+		EFB2_02118	0.55	+2.1
2,264,826	+		EFB2_02118	0.55	+1.8
2,264,826	+		EFB2_02118	0.55	+1.1
2,264,826	+		EFB2_02118	0.55	+0.3
2,264,826	+		EFB2_02118	0.55	+0.5
2,264,827	-		EFB2_02118	0.55	-1.7
2,264,827	-		EFB2_02118	0.55	-1.0
2,264,827	-		EFB2_02118	0.55	+2.1
2,264,827	-		EFB2_02118	0.55	-1.1
2,264,828	+		EFB2_02118	0.55	-1.4
2,264,828	+		EFB2_02118	0.55	+0.2
2,264,828	+		EFB2_02118	0.55	-0.9
2,264,828	+		EFB2_02118	0.55	-0.5
2,264,828	+		EFB2_02118	0.55	-0.3
2,264,828	+		EFB2_02118	0.55	-1.4
2,264,828	+		EFB2_02118	0.55	+0.5
2,264,828	+		EFB2_02118	0.55	+0.5
2,264,828	+		EFB2_02118	0.55	+1.4
2,264,828	+		EFB2_02118	0.55	+0.2
2,264,828	+		EFB2_02118	0.55	+0.3
2,264,828	+		EFB2_02118	0.55	-0.7
2,264,828	+		EFB2_02118	0.55	+1.1
2,264,828	+		EFB2_02118	0.55	+0.4
2,264,828	+		EFB2_02118	0.55	-0.4
2,264,828	+		EFB2_02118	0.55	+2.0
2,264,828	+		EFB2_02118	0.55	+1.4
2,264,828	+		EFB2_02118	0.55	+2.0
2,264,828	+		EFB2_02118	0.55	+0.2
2,264,828	+		EFB2_02118	0.55	-0.1
2,264,828	+		EFB2_02118	0.55	-0.6
2,264,828	+		EFB2_02118	0.55	-0.1
2,264,828	+		EFB2_02118	0.55	+0.7
2,264,828	+		EFB2_02118	0.55	+0.8
2,264,828	+		EFB2_02118	0.55	+0.9
2,264,828	+		EFB2_02118	0.55	-0.3
2,264,828	+		EFB2_02118	0.55	+0.4
2,264,828	+		EFB2_02118	0.55	+0.5
2,264,828	+		EFB2_02118	0.55	+0.7
2,264,829	-		EFB2_02118	0.55	-1.3
2,264,829	-		EFB2_02118	0.55	-0.9
2,264,829	-		EFB2_02118	0.55	-1.3
2,264,829	-		EFB2_02118	0.55	+0.7
2,264,829	-		EFB2_02118	0.55	+3.4
2,264,829	-		EFB2_02118	0.55	-2.2
2,264,829	-		EFB2_02118	0.55	+0.1
2,264,829	-		EFB2_02118	0.55	+0.2
2,264,829	-		EFB2_02118	0.55	-1.4
2,264,829	-		EFB2_02118	0.55	-0.4
2,264,829	-		EFB2_02118	0.55	+0.0
2,264,829	-		EFB2_02118	0.55	-1.7
2,264,829	-		EFB2_02118	0.55	-1.4
2,264,829	-		EFB2_02118	0.55	-1.7
2,264,829	-		EFB2_02118	0.55	+0.9
2,264,829	-		EFB2_02118	0.55	-0.3
2,264,832	+		EFB2_02118	0.55	+1.1
2,264,832	+		EFB2_02118	0.55	+2.7
2,264,833	-		EFB2_02118	0.56	-0.7
2,264,833	-		EFB2_02118	0.56	-0.7
2,264,833	-		EFB2_02118	0.56	-1.9
2,264,846	+		EFB2_02118	0.57	-2.6
2,264,847	-		EFB2_02118	0.57	-2.1
2,264,895	+		EFB2_02118	0.63	-1.2
2,264,896	-		EFB2_02118	0.63	-1.9