Strain Fitness in Escherichia fergusonii Becca around EFB2_01739

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, standard diet, mouse 1)
1,835,534	+				-2.1
1,835,536	+				+2.4
1,835,537	-				+1.8
1,835,583	+				+1.9
1,835,583	+				-0.6
1,835,583	+				+0.8
1,835,584	-				-0.2
1,835,585	+				+0.4
1,835,585	+				-2.2
1,835,585	+				+1.1
1,835,585	+				-1.2
1,835,585	+				-0.8
1,835,586	-				+1.4
1,835,586	-				+0.5
1,835,586	-				+0.1
1,835,602	+				-2.6
1,835,603	-				+0.9
1,835,603	-				+1.9
1,835,603	-				-2.2
1,835,634	+				+0.6
1,835,635	-				+1.9
1,835,650	+				-2.6
1,835,650	+				+2.0
1,835,755	+				-2.2
1,835,756	-				-3.7
1,835,785	-				-2.8
1,835,795	-				-3.4
1,835,812	+				-1.4
1,835,812	+				+0.3
1,835,812	+				-2.3
1,835,813	-				+0.0
1,835,813	-				-1.0
1,835,817	+				+0.1
1,835,818	-				-1.2
1,835,828	-				+3.3
1,835,828	-				-0.7
1,835,829	+				+0.3
1,835,829	+				-0.4
1,835,905	+				-0.5
1,835,906	-				+1.0
1,835,906	-				-0.9
1,835,906	-				+0.8
1,835,906	-				+2.8
1,835,906	-				+1.3
1,835,906	-				+0.6
1,835,943	+				-1.6
1,835,943	+				-0.7
1,835,943	+				+1.0
1,835,943	+				-0.6
1,835,943	+				-0.7
1,835,943	+				-0.2
1,835,943	+				-0.4
1,835,943	+				+0.5
1,835,944	-				+3.1
1,835,944	-				-1.1
1,835,944	-				+0.1
1,835,944	-				+0.9
1,835,944	-				+0.1
1,835,947	+				-2.1
1,835,947	+				-1.0
1,835,947	+				-0.7
1,835,947	+				-0.8
1,835,947	+				+2.9
1,835,947	+				+1.3
1,835,947	+				-2.2
1,835,947	+				+1.4
1,835,947	+				-1.3
1,835,947	+				+0.0
1,835,947	+				+0.3
1,835,947	+				+0.3
1,835,947	+				-0.0
1,835,947	+				-2.0
1,835,948	-				-1.9
1,835,948	-				+0.4
1,835,948	-				-1.5
1,835,948	-				+2.1
1,835,948	-				+0.2
1,835,948	-				+1.1
1,835,948	-				-0.4
1,835,948	-				-2.2
1,835,970	+				-3.3
1,835,970	+				+0.5
1,835,970	+				-1.9
1,835,970	+				+1.4
1,835,970	+				-0.5
1,835,971	-				+2.7
1,835,971	-				-1.0
1,835,971	-				+0.4
1,835,971	-				-0.4
1,835,971	-				-1.3
1,835,971	-				-2.7
1,835,971	-				-2.2
1,835,976	+				-0.5
1,835,976	+				+1.0
1,835,976	+				+1.1
1,835,976	+				-2.0
1,835,977	-				-0.7
1,835,977	-				-2.4
1,835,999	+				-0.3
1,835,999	+				+0.6
1,835,999	+				+1.0
1,835,999	+				+0.0
1,836,002	+				+0.9
1,836,002	+				+0.0
1,836,003	-				-0.4
1,836,003	-				-1.4
1,836,003	-				+0.6
1,836,003	-				+0.6
1,836,003	-				+1.3
1,836,003	-				+1.3
1,836,003	-				-2.6
1,836,037	-		EFB2_01738	0.26	+2.0
1,836,063	+		EFB2_01738	0.54	-0.5
1,836,063	+		EFB2_01738	0.54	-3.4
1,836,063	+		EFB2_01738	0.54	+0.0
1,836,063	+		EFB2_01738	0.54	+0.9
1,836,064	-		EFB2_01738	0.56	+0.2
1,836,066	+		EFB2_01738	0.58	-3.0
1,836,066	+		EFB2_01738	0.58	+1.2
1,836,066	+		EFB2_01738	0.58	-2.3
1,836,067	-		EFB2_01738	0.59	-2.0
1,836,067	-		EFB2_01738	0.59	+1.6
1,836,078	+		EFB2_01738	0.71	+0.3
1,836,079	-		EFB2_01738	0.72	+1.0
1,836,101	+				-1.2
1,836,149	+				-0.0
1,836,149	+				-1.2
1,836,149	+				+0.1
1,836,149	+				+0.6
1,836,152	+				-1.2
1,836,160	+				+2.1
1,836,160	+				-0.9
1,836,160	+				-0.1
1,836,160	+				+1.2
1,836,161	-				+2.7
1,836,161	-				-3.4
1,836,161	-				+1.3
1,836,169	+				+0.0
1,836,169	+				+0.6
1,836,169	+				+2.4
1,836,170	-				-0.5
1,836,170	-				+0.1
1,836,202	-				+0.7
1,836,241	+				+1.4
1,836,247	+				-0.7
1,836,247	+				-0.1
1,836,248	-				-1.7
1,836,248	-				-2.2
1,836,248	-				-1.9
1,836,248	-				-3.1
1,836,295	+				+0.9
1,836,295	+				-0.9
1,836,295	+				+2.0
1,836,295	+				-1.4
1,836,296	-				-3.1
1,836,296	-				-2.8
1,836,296	-				+1.1
1,836,296	-				-0.4
1,836,301	-				+3.1
1,836,350	+				-1.2
1,836,350	+				-0.7
1,836,359	+				-1.3
1,836,362	-				-0.5
1,836,362	-				-0.6
1,836,364	+				-0.3
1,836,364	+				+0.3
1,836,365	-				-1.0
1,836,418	-				+0.6
1,836,458	+				+1.0
1,836,471	+				-2.6
1,836,473	+				-1.4
1,836,473	+				-1.8
1,836,473	+				-1.4
1,836,474	-				-0.3
1,836,475	+				-0.2
1,836,476	-				+0.8
1,836,476	-				-0.3
1,836,476	-				-0.8
1,836,492	+				-2.5
1,836,492	+				+1.2
1,836,493	-				+0.0
1,836,493	-				+1.4
1,836,539	+		EFB2_01739	0.24	+0.3
1,836,578	+		EFB2_01739	0.45	-1.8
1,836,578	+		EFB2_01739	0.45	+0.8
1,836,578	+		EFB2_01739	0.45	+1.7
1,836,578	+		EFB2_01739	0.45	-2.9
1,836,592	+		EFB2_01739	0.53	+0.6
1,836,593	-		EFB2_01739	0.53	-0.2
1,836,629	+		EFB2_01739	0.73	+0.4
1,836,643	-		EFB2_01739	0.80	-1.2
1,836,648	+		EFB2_01739	0.83	-1.7
1,836,648	+		EFB2_01739	0.83	-1.0
1,836,648	+		EFB2_01739	0.83	+1.3
1,836,649	-		EFB2_01739	0.83	+2.2
1,836,649	-		EFB2_01739	0.83	+1.4
1,836,652	+		EFB2_01739	0.85	+1.4
1,836,652	+		EFB2_01739	0.85	+0.6
1,836,653	-		EFB2_01739	0.85	-1.2
1,836,695	+				+0.4
1,836,695	+				+1.2
1,836,695	+				-0.2
1,836,695	+				+1.2
1,836,695	+				+1.3
1,836,695	+				+1.2
1,836,696	-				-1.2
1,836,696	-				+1.4
1,836,696	-				-0.7
1,836,708	+				-0.8
1,836,709	-				+0.8
1,836,768	-				-1.0
1,836,768	-				+1.1
1,836,817	+				-1.5
1,836,817	+				+0.2
1,836,818	-				+2.9
1,836,818	-				+0.4
1,836,829	-				+0.6
1,836,871	+				-2.7
1,836,871	+				-2.2
1,836,872	-				+0.0
1,836,872	-				-0.7
1,836,872	-				+2.1
1,836,872	-				+1.0
1,836,872	-				+0.1
1,836,872	-				-1.5
1,836,876	+				-1.7
1,836,876	+				+0.0
1,836,876	+				-0.4
1,836,876	+				-1.7
1,836,876	+				-1.2
1,836,877	-				-1.5
1,836,877	-				+0.8
1,836,877	-				+0.5
1,836,877	-				-2.9
1,836,877	-				+0.2
1,836,877	-				+0.8
1,836,883	+				-0.6
1,836,884	-				+1.2
1,836,884	-				+0.3
1,836,884	-				+0.3
1,836,901	+				-0.2
1,836,916	-				+1.2
1,836,923	+				+3.9
1,836,923	+				-1.0
1,836,923	+				+0.2
1,836,923	+				-1.4
1,836,923	+				-2.2
1,836,923	+				-1.0
1,836,923	+				+1.5
1,836,923	+				+0.2
1,836,924	-				+1.4
1,836,924	-				+0.9
1,836,924	-				+0.8
1,836,924	-				-0.2
1,836,924	-				-0.0
1,836,924	-				-2.8
1,836,924	-				-1.3
1,836,924	-				-1.5
1,836,924	-				+1.6
1,836,924	-				+3.0
1,836,924	-				-0.2
1,836,924	-				+0.2
1,836,924	-				+1.8
1,836,924	-				-1.0
1,836,924	-				-1.5
1,836,924	-				+1.5
1,836,930	+				+0.0
1,836,930	+				-2.0
1,836,930	+				-1.7
1,836,931	-				-1.1
1,836,948	+				-1.9
1,836,949	-				+0.2
1,836,949	-				+0.6
1,836,969	+				+1.5
1,836,969	+				+1.1
1,836,969	+				-0.0
1,836,970	-				-2.5
1,836,982	+				-2.3
1,836,983	-				+0.4
1,837,007	-				-0.5
1,837,007	-				-1.0
1,837,027	+				+1.6
1,837,027	+				+0.6
1,837,027	+				+2.4
1,837,027	+				-1.0
1,837,028	-				+0.4
1,837,028	-				+2.4
1,837,031	-				+0.2
1,837,093	+				+2.9
1,837,093	+				-1.8
1,837,094	-				-0.0
1,837,249	+		EFB2_01740	0.14	-1.5
1,837,250	-		EFB2_01740	0.14	+1.4
1,837,250	-		EFB2_01740	0.14	-1.3
1,837,250	-		EFB2_01740	0.14	-1.5
1,837,253	+		EFB2_01740	0.14	-3.7
1,837,254	-		EFB2_01740	0.14	+1.5
1,837,254	-		EFB2_01740	0.14	-0.4
1,837,289	+		EFB2_01740	0.15	+0.6
1,837,289	+		EFB2_01740	0.15	-0.8
1,837,293	-		EFB2_01740	0.15	+1.3
1,837,327	+		EFB2_01740	0.16	+0.3
1,837,327	+		EFB2_01740	0.16	-1.0
1,837,535	-		EFB2_01740	0.22	-1.2
1,837,567	+		EFB2_01740	0.23	-1.5
1,837,567	+		EFB2_01740	0.23	-0.4
1,837,568	-		EFB2_01740	0.23	+0.4
1,837,568	-		EFB2_01740	0.23	+1.3
1,837,631	+		EFB2_01740	0.25	-2.7
1,837,631	+		EFB2_01740	0.25	-3.0
1,837,631	+		EFB2_01740	0.25	-2.3
1,837,631	+		EFB2_01740	0.25	-2.6
1,837,632	+		EFB2_01740	0.25	+0.4
1,837,632	-		EFB2_01740	0.25	-0.9
1,837,632	-		EFB2_01740	0.25	+1.1
1,837,632	-		EFB2_01740	0.25	+2.1
1,837,632	-		EFB2_01740	0.25	-0.1
1,837,658	+		EFB2_01740	0.25	-0.7
1,837,659	-		EFB2_01740	0.25	+2.5