Experiment: polygalacturonic 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05462 and BACOVA_05463 are separated by 32 nucleotides BACOVA_05463 and BACOVA_05464 are separated by 120 nucleotides BACOVA_05464 and BACOVA_05465 are separated by 90 nucleotides
BACOVA_05462: BACOVA_05462 - hypothetical protein, at 947,960 to 948,307
_05462
BACOVA_05463: BACOVA_05463 - hypothetical protein, at 948,340 to 948,897
_05463
BACOVA_05464: BACOVA_05464 - hypothetical protein, at 949,018 to 951,702
_05464
BACOVA_05465: BACOVA_05465 - putative ATP synthase F0, A subunit, at 951,793 to 953,364
_05465
Position (kb) 949
950
951
952 Strain fitness (log2 ratio) -2
-1
0
1
2 at 948.104 kb on - strand, within BACOVA_05462 at 948.181 kb on + strand, within BACOVA_05462 at 948.246 kb on + strand, within BACOVA_05462 at 948.294 kb on + strand at 948.358 kb on + strand at 948.401 kb on + strand, within BACOVA_05463 at 948.444 kb on + strand, within BACOVA_05463 at 948.570 kb on + strand, within BACOVA_05463 at 948.618 kb on + strand, within BACOVA_05463 at 948.721 kb on + strand, within BACOVA_05463 at 948.724 kb on + strand, within BACOVA_05463 at 948.744 kb on - strand, within BACOVA_05463 at 948.749 kb on - strand, within BACOVA_05463 at 948.896 kb on - strand at 948.896 kb on - strand at 948.913 kb on + strand at 948.968 kb on - strand at 948.997 kb on + strand at 949.129 kb on - strand at 949.129 kb on - strand at 949.132 kb on - strand at 949.132 kb on - strand at 949.132 kb on - strand at 949.132 kb on - strand at 949.206 kb on + strand at 949.207 kb on - strand at 949.207 kb on - strand at 949.223 kb on + strand at 949.226 kb on + strand at 949.226 kb on + strand at 949.227 kb on - strand at 949.237 kb on + strand at 949.237 kb on + strand at 949.239 kb on + strand at 949.248 kb on + strand at 949.248 kb on + strand at 949.249 kb on - strand at 949.249 kb on - strand at 949.355 kb on + strand, within BACOVA_05464 at 949.355 kb on + strand, within BACOVA_05464 at 949.356 kb on - strand, within BACOVA_05464 at 949.390 kb on - strand, within BACOVA_05464 at 949.476 kb on - strand, within BACOVA_05464 at 949.489 kb on - strand, within BACOVA_05464 at 949.605 kb on - strand, within BACOVA_05464 at 949.605 kb on - strand, within BACOVA_05464 at 949.605 kb on - strand, within BACOVA_05464 at 949.613 kb on - strand, within BACOVA_05464 at 949.735 kb on + strand, within BACOVA_05464 at 949.744 kb on - strand, within BACOVA_05464 at 949.744 kb on - strand, within BACOVA_05464 at 949.754 kb on - strand, within BACOVA_05464 at 949.761 kb on - strand, within BACOVA_05464 at 949.799 kb on + strand, within BACOVA_05464 at 949.830 kb on + strand, within BACOVA_05464 at 949.850 kb on + strand, within BACOVA_05464 at 949.878 kb on + strand, within BACOVA_05464 at 949.882 kb on - strand, within BACOVA_05464 at 949.937 kb on - strand, within BACOVA_05464 at 949.958 kb on + strand, within BACOVA_05464 at 949.975 kb on + strand, within BACOVA_05464 at 949.976 kb on - strand, within BACOVA_05464 at 950.130 kb on + strand, within BACOVA_05464 at 950.153 kb on - strand, within BACOVA_05464 at 950.245 kb on - strand, within BACOVA_05464 at 950.263 kb on - strand, within BACOVA_05464 at 950.330 kb on + strand, within BACOVA_05464 at 950.335 kb on + strand, within BACOVA_05464 at 950.336 kb on - strand, within BACOVA_05464 at 950.336 kb on - strand, within BACOVA_05464 at 950.340 kb on + strand, within BACOVA_05464 at 950.341 kb on - strand, within BACOVA_05464 at 950.341 kb on - strand, within BACOVA_05464 at 950.341 kb on - strand, within BACOVA_05464 at 950.344 kb on - strand, within BACOVA_05464 at 950.377 kb on - strand, within BACOVA_05464 at 950.470 kb on + strand, within BACOVA_05464 at 950.470 kb on + strand, within BACOVA_05464 at 950.471 kb on - strand, within BACOVA_05464 at 950.474 kb on + strand, within BACOVA_05464 at 950.507 kb on + strand, within BACOVA_05464 at 950.508 kb on - strand, within BACOVA_05464 at 950.508 kb on - strand, within BACOVA_05464 at 950.518 kb on + strand, within BACOVA_05464 at 950.524 kb on + strand, within BACOVA_05464 at 950.536 kb on - strand, within BACOVA_05464 at 950.629 kb on + strand, within BACOVA_05464 at 950.631 kb on + strand, within BACOVA_05464 at 950.631 kb on + strand, within BACOVA_05464 at 950.634 kb on + strand, within BACOVA_05464 at 950.645 kb on + strand, within BACOVA_05464 at 950.661 kb on + strand, within BACOVA_05464 at 950.689 kb on - strand, within BACOVA_05464 at 950.787 kb on + strand, within BACOVA_05464 at 950.805 kb on + strand, within BACOVA_05464 at 950.805 kb on + strand, within BACOVA_05464 at 950.867 kb on + strand, within BACOVA_05464 at 950.944 kb on + strand, within BACOVA_05464 at 950.944 kb on + strand, within BACOVA_05464 at 950.944 kb on + strand, within BACOVA_05464 at 950.944 kb on + strand, within BACOVA_05464 at 950.944 kb on + strand, within BACOVA_05464 at 950.946 kb on + strand, within BACOVA_05464 at 950.978 kb on - strand, within BACOVA_05464 at 950.979 kb on + strand, within BACOVA_05464 at 951.005 kb on + strand, within BACOVA_05464 at 951.030 kb on + strand, within BACOVA_05464 at 951.030 kb on + strand, within BACOVA_05464 at 951.034 kb on - strand, within BACOVA_05464 at 951.059 kb on - strand, within BACOVA_05464 at 951.059 kb on - strand, within BACOVA_05464 at 951.059 kb on - strand, within BACOVA_05464 at 951.078 kb on - strand, within BACOVA_05464 at 951.084 kb on + strand, within BACOVA_05464 at 951.099 kb on + strand, within BACOVA_05464 at 951.099 kb on + strand, within BACOVA_05464 at 951.159 kb on + strand, within BACOVA_05464 at 951.178 kb on + strand, within BACOVA_05464 at 951.178 kb on + strand, within BACOVA_05464 at 951.213 kb on + strand, within BACOVA_05464 at 951.213 kb on + strand, within BACOVA_05464 at 951.213 kb on + strand, within BACOVA_05464 at 951.214 kb on - strand, within BACOVA_05464 at 951.214 kb on - strand, within BACOVA_05464 at 951.279 kb on - strand, within BACOVA_05464 at 951.337 kb on - strand, within BACOVA_05464 at 951.348 kb on + strand, within BACOVA_05464 at 951.349 kb on - strand, within BACOVA_05464 at 951.349 kb on - strand, within BACOVA_05464 at 951.349 kb on - strand, within BACOVA_05464 at 951.369 kb on + strand, within BACOVA_05464 at 951.435 kb on - strand at 951.435 kb on - strand at 951.437 kb on - strand at 951.438 kb on + strand at 951.552 kb on - strand at 951.552 kb on - strand at 951.552 kb on - strand at 951.566 kb on + strand at 951.567 kb on - strand at 951.574 kb on - strand at 951.594 kb on + strand at 951.595 kb on - strand at 951.595 kb on - strand at 951.599 kb on + strand at 951.637 kb on + strand at 951.647 kb on + strand at 951.648 kb on - strand at 951.655 kb on + strand at 951.656 kb on - strand at 951.672 kb on + strand at 951.675 kb on - strand at 951.687 kb on + strand at 951.722 kb on + strand at 951.723 kb on - strand at 951.756 kb on + strand at 951.757 kb on - strand at 951.767 kb on + strand at 951.768 kb on - strand at 951.781 kb on - strand at 951.871 kb on + strand at 951.883 kb on - strand at 951.890 kb on + strand at 951.896 kb on + strand at 951.897 kb on - strand at 951.932 kb on + strand at 951.932 kb on + strand at 951.933 kb on - strand at 951.933 kb on - strand at 951.933 kb on - strand at 951.988 kb on + strand, within BACOVA_05465 at 951.989 kb on - strand, within BACOVA_05465 at 951.994 kb on + strand, within BACOVA_05465 at 951.994 kb on + strand, within BACOVA_05465 at 951.994 kb on + strand, within BACOVA_05465 at 951.994 kb on + strand, within BACOVA_05465 at 951.995 kb on - strand, within BACOVA_05465 at 951.995 kb on - strand, within BACOVA_05465 at 951.998 kb on + strand, within BACOVA_05465 at 951.998 kb on + strand, within BACOVA_05465 at 951.998 kb on + strand, within BACOVA_05465 at 951.998 kb on + strand, within BACOVA_05465 at 951.998 kb on + strand, within BACOVA_05465 at 951.999 kb on - strand, within BACOVA_05465 at 951.999 kb on - strand, within BACOVA_05465 at 952.025 kb on + strand, within BACOVA_05465 at 952.025 kb on + strand, within BACOVA_05465 at 952.026 kb on - strand, within BACOVA_05465 at 952.032 kb on - strand, within BACOVA_05465 at 952.049 kb on + strand, within BACOVA_05465 at 952.121 kb on - strand, within BACOVA_05465 at 952.175 kb on + strand, within BACOVA_05465 at 952.175 kb on + strand, within BACOVA_05465 at 952.176 kb on - strand, within BACOVA_05465 at 952.187 kb on + strand, within BACOVA_05465 at 952.227 kb on + strand, within BACOVA_05465 at 952.228 kb on + strand, within BACOVA_05465 at 952.229 kb on - strand, within BACOVA_05465 at 952.229 kb on - strand, within BACOVA_05465 at 952.229 kb on - strand, within BACOVA_05465 at 952.229 kb on - strand, within BACOVA_05465 at 952.267 kb on - strand, within BACOVA_05465 at 952.286 kb on + strand, within BACOVA_05465 at 952.386 kb on + strand, within BACOVA_05465 at 952.395 kb on + strand, within BACOVA_05465 at 952.396 kb on - strand, within BACOVA_05465 at 952.399 kb on - strand, within BACOVA_05465 at 952.399 kb on - strand, within BACOVA_05465 at 952.471 kb on - strand, within BACOVA_05465 at 952.591 kb on - strand, within BACOVA_05465 at 952.595 kb on - strand, within BACOVA_05465 at 952.602 kb on + strand, within BACOVA_05465 at 952.603 kb on - strand, within BACOVA_05465 at 952.605 kb on + strand, within BACOVA_05465 at 952.605 kb on + strand, within BACOVA_05465 at 952.619 kb on - strand, within BACOVA_05465 at 952.623 kb on - strand, within BACOVA_05465 at 952.633 kb on + strand, within BACOVA_05465 at 952.647 kb on - strand, within BACOVA_05465 at 952.674 kb on + strand, within BACOVA_05465
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic 2.5 mg/mL (C) remove 948,104 - BACOVA_05462 0.41 +1.0 948,181 + BACOVA_05462 0.64 -0.6 948,246 + BACOVA_05462 0.82 +0.3 948,294 + +0.3 948,358 + -1.5 948,401 + BACOVA_05463 0.11 +0.1 948,444 + BACOVA_05463 0.19 +0.5 948,570 + BACOVA_05463 0.41 -0.5 948,618 + BACOVA_05463 0.50 +1.5 948,721 + BACOVA_05463 0.68 -0.7 948,724 + BACOVA_05463 0.69 -0.7 948,744 - BACOVA_05463 0.72 -0.2 948,749 - BACOVA_05463 0.73 -0.9 948,896 - -1.0 948,896 - +0.8 948,913 + -0.8 948,968 - +0.2 948,997 + +0.1 949,129 - +0.0 949,129 - -0.2 949,132 - -0.0 949,132 - -0.7 949,132 - +0.3 949,132 - +1.0 949,206 + -2.0 949,207 - +0.5 949,207 - -0.3 949,223 + -2.2 949,226 + +0.3 949,226 + +1.7 949,227 - -0.3 949,237 + -1.4 949,237 + +0.4 949,239 + -0.2 949,248 + -0.3 949,248 + +1.5 949,249 - +0.3 949,249 - +0.7 949,355 + BACOVA_05464 0.13 -0.1 949,355 + BACOVA_05464 0.13 -0.7 949,356 - BACOVA_05464 0.13 -2.2 949,390 - BACOVA_05464 0.14 +0.9 949,476 - BACOVA_05464 0.17 +1.5 949,489 - BACOVA_05464 0.18 -0.9 949,605 - BACOVA_05464 0.22 -1.2 949,605 - BACOVA_05464 0.22 +0.0 949,605 - BACOVA_05464 0.22 -1.3 949,613 - BACOVA_05464 0.22 +0.5 949,735 + BACOVA_05464 0.27 -1.0 949,744 - BACOVA_05464 0.27 +0.3 949,744 - BACOVA_05464 0.27 +0.4 949,754 - BACOVA_05464 0.27 +0.6 949,761 - BACOVA_05464 0.28 +1.6 949,799 + BACOVA_05464 0.29 +1.3 949,830 + BACOVA_05464 0.30 +0.4 949,850 + BACOVA_05464 0.31 +0.8 949,878 + BACOVA_05464 0.32 -1.3 949,882 - BACOVA_05464 0.32 -0.2 949,937 - BACOVA_05464 0.34 +0.6 949,958 + BACOVA_05464 0.35 -0.7 949,975 + BACOVA_05464 0.36 +0.3 949,976 - BACOVA_05464 0.36 +0.3 950,130 + BACOVA_05464 0.41 -1.7 950,153 - BACOVA_05464 0.42 -0.6 950,245 - BACOVA_05464 0.46 -1.6 950,263 - BACOVA_05464 0.46 +0.0 950,330 + BACOVA_05464 0.49 +0.4 950,335 + BACOVA_05464 0.49 -0.8 950,336 - BACOVA_05464 0.49 +1.2 950,336 - BACOVA_05464 0.49 -0.3 950,340 + BACOVA_05464 0.49 -1.2 950,341 - BACOVA_05464 0.49 -1.3 950,341 - BACOVA_05464 0.49 +1.5 950,341 - BACOVA_05464 0.49 +0.0 950,344 - BACOVA_05464 0.49 -0.8 950,377 - BACOVA_05464 0.51 +0.0 950,470 + BACOVA_05464 0.54 -1.1 950,470 + BACOVA_05464 0.54 -0.4 950,471 - BACOVA_05464 0.54 +0.1 950,474 + BACOVA_05464 0.54 -1.0 950,507 + BACOVA_05464 0.55 +0.7 950,508 - BACOVA_05464 0.55 +0.6 950,508 - BACOVA_05464 0.55 +0.4 950,518 + BACOVA_05464 0.56 -1.5 950,524 + BACOVA_05464 0.56 +0.8 950,536 - BACOVA_05464 0.57 -1.7 950,629 + BACOVA_05464 0.60 +0.8 950,631 + BACOVA_05464 0.60 +1.3 950,631 + BACOVA_05464 0.60 -0.4 950,634 + BACOVA_05464 0.60 -1.4 950,645 + BACOVA_05464 0.61 +0.2 950,661 + BACOVA_05464 0.61 -0.2 950,689 - BACOVA_05464 0.62 -0.2 950,787 + BACOVA_05464 0.66 +0.8 950,805 + BACOVA_05464 0.67 -0.2 950,805 + BACOVA_05464 0.67 +0.5 950,867 + BACOVA_05464 0.69 +0.1 950,944 + BACOVA_05464 0.72 -0.3 950,944 + BACOVA_05464 0.72 +0.3 950,944 + BACOVA_05464 0.72 +0.0 950,944 + BACOVA_05464 0.72 +1.4 950,944 + BACOVA_05464 0.72 +0.2 950,946 + BACOVA_05464 0.72 -0.4 950,978 - BACOVA_05464 0.73 +0.8 950,979 + BACOVA_05464 0.73 +0.3 951,005 + BACOVA_05464 0.74 +0.8 951,030 + BACOVA_05464 0.75 +1.0 951,030 + BACOVA_05464 0.75 +0.1 951,034 - BACOVA_05464 0.75 -0.2 951,059 - BACOVA_05464 0.76 +0.1 951,059 - BACOVA_05464 0.76 +1.8 951,059 - BACOVA_05464 0.76 +0.6 951,078 - BACOVA_05464 0.77 +1.4 951,084 + BACOVA_05464 0.77 +0.2 951,099 + BACOVA_05464 0.78 -0.5 951,099 + BACOVA_05464 0.78 +0.7 951,159 + BACOVA_05464 0.80 -0.6 951,178 + BACOVA_05464 0.80 +0.3 951,178 + BACOVA_05464 0.80 +0.5 951,213 + BACOVA_05464 0.82 +0.0 951,213 + BACOVA_05464 0.82 +1.1 951,213 + BACOVA_05464 0.82 +1.1 951,214 - BACOVA_05464 0.82 -1.5 951,214 - BACOVA_05464 0.82 +1.2 951,279 - BACOVA_05464 0.84 -0.8 951,337 - BACOVA_05464 0.86 -0.0 951,348 + BACOVA_05464 0.87 +0.2 951,349 - BACOVA_05464 0.87 +1.4 951,349 - BACOVA_05464 0.87 +0.7 951,349 - BACOVA_05464 0.87 -0.2 951,369 + BACOVA_05464 0.88 +1.7 951,435 - -1.9 951,435 - +0.3 951,437 - +0.3 951,438 + -0.1 951,552 - -0.2 951,552 - +0.7 951,552 - -0.3 951,566 + +0.5 951,567 - +0.8 951,574 - -0.4 951,594 + -0.1 951,595 - -0.3 951,595 - +1.4 951,599 + +0.6 951,637 + +0.1 951,647 + +0.9 951,648 - -0.6 951,655 + -0.5 951,656 - -0.5 951,672 + +1.5 951,675 - -1.4 951,687 + -0.3 951,722 + +0.1 951,723 - +0.3 951,756 + +0.8 951,757 - -0.3 951,767 + -1.3 951,768 - +0.7 951,781 - +0.6 951,871 + +0.6 951,883 - -0.6 951,890 + -0.4 951,896 + +0.8 951,897 - +0.5 951,932 + -0.1 951,932 + +0.8 951,933 - -0.4 951,933 - -0.1 951,933 - -1.7 951,988 + BACOVA_05465 0.12 -0.3 951,989 - BACOVA_05465 0.12 -0.1 951,994 + BACOVA_05465 0.13 +0.3 951,994 + BACOVA_05465 0.13 +0.4 951,994 + BACOVA_05465 0.13 -0.7 951,994 + BACOVA_05465 0.13 +0.3 951,995 - BACOVA_05465 0.13 +0.9 951,995 - BACOVA_05465 0.13 +0.3 951,998 + BACOVA_05465 0.13 +0.7 951,998 + BACOVA_05465 0.13 +0.7 951,998 + BACOVA_05465 0.13 -0.3 951,998 + BACOVA_05465 0.13 -0.3 951,998 + BACOVA_05465 0.13 +0.6 951,999 - BACOVA_05465 0.13 +0.5 951,999 - BACOVA_05465 0.13 +0.8 952,025 + BACOVA_05465 0.15 +0.4 952,025 + BACOVA_05465 0.15 +0.4 952,026 - BACOVA_05465 0.15 +0.3 952,032 - BACOVA_05465 0.15 +0.3 952,049 + BACOVA_05465 0.16 -0.3 952,121 - BACOVA_05465 0.21 +0.3 952,175 + BACOVA_05465 0.24 -1.5 952,175 + BACOVA_05465 0.24 -0.3 952,176 - BACOVA_05465 0.24 -0.2 952,187 + BACOVA_05465 0.25 -0.1 952,227 + BACOVA_05465 0.28 -0.2 952,228 + BACOVA_05465 0.28 -1.0 952,229 - BACOVA_05465 0.28 +0.6 952,229 - BACOVA_05465 0.28 +0.3 952,229 - BACOVA_05465 0.28 +0.5 952,229 - BACOVA_05465 0.28 +0.8 952,267 - BACOVA_05465 0.30 +0.0 952,286 + BACOVA_05465 0.31 +0.2 952,386 + BACOVA_05465 0.38 +0.4 952,395 + BACOVA_05465 0.38 -0.6 952,396 - BACOVA_05465 0.38 +0.4 952,399 - BACOVA_05465 0.39 +0.3 952,399 - BACOVA_05465 0.39 -0.1 952,471 - BACOVA_05465 0.43 +0.4 952,591 - BACOVA_05465 0.51 +1.0 952,595 - BACOVA_05465 0.51 +0.0 952,602 + BACOVA_05465 0.51 -0.7 952,603 - BACOVA_05465 0.52 +0.1 952,605 + BACOVA_05465 0.52 +1.3 952,605 + BACOVA_05465 0.52 -0.6 952,619 - BACOVA_05465 0.53 +0.2 952,623 - BACOVA_05465 0.53 +0.1 952,633 + BACOVA_05465 0.53 -0.3 952,647 - BACOVA_05465 0.54 +0.4 952,674 + BACOVA_05465 0.56 +0.3
Or see this region's nucleotide sequence