Experiment: polygalacturonic 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04766 and BACOVA_04767 are separated by 26 nucleotides BACOVA_04767 and BACOVA_04768 overlap by 4 nucleotides BACOVA_04768 and BACOVA_04769 are separated by 20 nucleotides BACOVA_04769 and BACOVA_04770 are separated by 11 nucleotides
BACOVA_04766: BACOVA_04766 - hypothetical protein, at 120,867 to 121,523
_04766
BACOVA_04767: BACOVA_04767 - hypothetical protein, at 121,550 to 122,074
_04767
BACOVA_04768: BACOVA_04768 - conjugative transposon TraN protein, at 122,071 to 122,922
_04768
BACOVA_04769: BACOVA_04769 - DNA (cytosine-5-)-methyltransferase, at 122,943 to 123,746
_04769
BACOVA_04770: BACOVA_04770 - conjugative transposon TraM protein, at 123,758 to 124,933
_04770
Position (kb) 122
123 Strain fitness (log2 ratio) -1
0
1
2 at 121.081 kb on + strand, within BACOVA_04766 at 121.081 kb on + strand, within BACOVA_04766 at 121.112 kb on + strand, within BACOVA_04766 at 121.114 kb on + strand, within BACOVA_04766 at 121.114 kb on + strand, within BACOVA_04766 at 121.186 kb on + strand, within BACOVA_04766 at 121.378 kb on + strand, within BACOVA_04766 at 121.378 kb on + strand, within BACOVA_04766 at 121.388 kb on - strand, within BACOVA_04766 at 121.418 kb on + strand, within BACOVA_04766 at 121.418 kb on + strand, within BACOVA_04766 at 121.419 kb on - strand, within BACOVA_04766 at 121.419 kb on - strand, within BACOVA_04766 at 121.446 kb on + strand, within BACOVA_04766 at 121.518 kb on + strand at 121.518 kb on + strand at 121.519 kb on - strand at 121.610 kb on + strand, within BACOVA_04767 at 121.610 kb on + strand, within BACOVA_04767 at 121.782 kb on + strand, within BACOVA_04767 at 121.837 kb on + strand, within BACOVA_04767 at 121.905 kb on + strand, within BACOVA_04767 at 121.923 kb on + strand, within BACOVA_04767 at 122.304 kb on + strand, within BACOVA_04768 at 122.420 kb on + strand, within BACOVA_04768 at 122.424 kb on + strand, within BACOVA_04768 at 122.425 kb on - strand, within BACOVA_04768 at 122.552 kb on + strand, within BACOVA_04768 at 122.616 kb on - strand, within BACOVA_04768 at 122.616 kb on - strand, within BACOVA_04768 at 122.627 kb on + strand, within BACOVA_04768 at 122.627 kb on + strand, within BACOVA_04768 at 122.628 kb on - strand, within BACOVA_04768 at 122.760 kb on + strand, within BACOVA_04768 at 122.840 kb on + strand at 122.840 kb on + strand at 122.840 kb on + strand at 122.841 kb on - strand at 122.841 kb on - strand at 122.841 kb on - strand at 122.841 kb on - strand at 122.904 kb on + strand at 122.905 kb on - strand at 122.905 kb on - strand at 122.909 kb on - strand at 123.157 kb on + strand, within BACOVA_04769 at 123.162 kb on + strand, within BACOVA_04769 at 123.193 kb on + strand, within BACOVA_04769 at 123.370 kb on + strand, within BACOVA_04769 at 123.372 kb on + strand, within BACOVA_04769 at 123.710 kb on + strand at 123.719 kb on + strand at 123.722 kb on + strand at 123.722 kb on + strand at 123.722 kb on + strand at 123.722 kb on + strand at 123.724 kb on + strand at 123.725 kb on - strand at 123.726 kb on + strand at 123.726 kb on + strand at 123.726 kb on + strand at 123.812 kb on + strand at 123.812 kb on + strand at 123.812 kb on + strand at 123.829 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic 2.5 mg/mL (C) remove 121,081 + BACOVA_04766 0.33 -1.5 121,081 + BACOVA_04766 0.33 -1.5 121,112 + BACOVA_04766 0.37 -1.0 121,114 + BACOVA_04766 0.38 -0.1 121,114 + BACOVA_04766 0.38 -0.5 121,186 + BACOVA_04766 0.49 -0.0 121,378 + BACOVA_04766 0.78 +0.5 121,378 + BACOVA_04766 0.78 -0.1 121,388 - BACOVA_04766 0.79 -1.5 121,418 + BACOVA_04766 0.84 +0.2 121,418 + BACOVA_04766 0.84 -0.2 121,419 - BACOVA_04766 0.84 -0.1 121,419 - BACOVA_04766 0.84 -0.9 121,446 + BACOVA_04766 0.88 +0.0 121,518 + +2.2 121,518 + -0.3 121,519 - -0.9 121,610 + BACOVA_04767 0.11 -1.1 121,610 + BACOVA_04767 0.11 -1.7 121,782 + BACOVA_04767 0.44 -0.6 121,837 + BACOVA_04767 0.55 -0.9 121,905 + BACOVA_04767 0.68 -0.5 121,923 + BACOVA_04767 0.71 -0.2 122,304 + BACOVA_04768 0.27 +1.2 122,420 + BACOVA_04768 0.41 -0.6 122,424 + BACOVA_04768 0.41 +0.5 122,425 - BACOVA_04768 0.42 +0.5 122,552 + BACOVA_04768 0.56 +0.1 122,616 - BACOVA_04768 0.64 +0.7 122,616 - BACOVA_04768 0.64 -0.6 122,627 + BACOVA_04768 0.65 +0.4 122,627 + BACOVA_04768 0.65 +1.6 122,628 - BACOVA_04768 0.65 +1.6 122,760 + BACOVA_04768 0.81 -0.7 122,840 + +0.7 122,840 + -0.3 122,840 + -0.0 122,841 - +0.4 122,841 - +0.1 122,841 - -0.3 122,841 - -0.3 122,904 + +0.1 122,905 - -0.6 122,905 - -0.4 122,909 - -1.2 123,157 + BACOVA_04769 0.27 +0.0 123,162 + BACOVA_04769 0.27 +0.1 123,193 + BACOVA_04769 0.31 -0.5 123,370 + BACOVA_04769 0.53 -0.2 123,372 + BACOVA_04769 0.53 +0.2 123,710 + +1.5 123,719 + -0.5 123,722 + +0.7 123,722 + -0.8 123,722 + -0.7 123,722 + -1.5 123,724 + -0.6 123,725 - -0.4 123,726 + -0.5 123,726 + -0.4 123,726 + -0.3 123,812 + -0.5 123,812 + +0.9 123,812 + +0.3 123,829 + +0.9
Or see this region's nucleotide sequence