Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03635

Experiment: polygalacturonic 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03634 and BACOVA_03635 are separated by 13 nucleotidesBACOVA_03635 and BACOVA_03636 are separated by 57 nucleotides BACOVA_03634: BACOVA_03634 - TonB-linked outer membrane protein, SusC/RagA family, at 447,797 to 451,042 _03634 BACOVA_03635: BACOVA_03635 - SusD family protein, at 451,056 to 452,984 _03635 BACOVA_03636: BACOVA_03636 - hypothetical protein, at 453,042 to 454,586 _03636 Position (kb) 451 452 453Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 450.081 kb on + strand, within BACOVA_03634at 450.082 kb on - strand, within BACOVA_03634at 450.093 kb on - strand, within BACOVA_03634at 450.116 kb on - strand, within BACOVA_03634at 450.137 kb on - strand, within BACOVA_03634at 450.160 kb on - strand, within BACOVA_03634at 450.195 kb on + strand, within BACOVA_03634at 450.196 kb on - strand, within BACOVA_03634at 450.196 kb on - strand, within BACOVA_03634at 450.196 kb on - strand, within BACOVA_03634at 450.260 kb on + strand, within BACOVA_03634at 450.260 kb on + strand, within BACOVA_03634at 450.261 kb on - strand, within BACOVA_03634at 450.262 kb on + strand, within BACOVA_03634at 450.304 kb on + strand, within BACOVA_03634at 450.453 kb on + strand, within BACOVA_03634at 450.454 kb on - strand, within BACOVA_03634at 450.476 kb on - strand, within BACOVA_03634at 450.596 kb on - strand, within BACOVA_03634at 450.601 kb on - strand, within BACOVA_03634at 450.603 kb on + strand, within BACOVA_03634at 450.628 kb on + strand, within BACOVA_03634at 450.736 kb on + strandat 450.747 kb on - strandat 450.859 kb on - strandat 450.878 kb on - strandat 450.901 kb on + strandat 450.902 kb on - strandat 450.902 kb on - strandat 450.902 kb on - strandat 450.902 kb on - strandat 450.906 kb on - strandat 450.909 kb on + strandat 450.910 kb on - strandat 450.955 kb on + strandat 450.956 kb on - strandat 450.957 kb on + strandat 450.957 kb on + strandat 450.958 kb on - strandat 451.012 kb on - strandat 451.030 kb on + strandat 451.031 kb on - strandat 451.045 kb on - strandat 451.049 kb on + strandat 451.049 kb on + strandat 451.050 kb on - strandat 451.056 kb on - strandat 451.071 kb on - strandat 451.090 kb on + strandat 451.112 kb on + strandat 451.151 kb on + strandat 451.152 kb on - strandat 451.154 kb on + strandat 451.319 kb on + strand, within BACOVA_03635at 451.320 kb on - strand, within BACOVA_03635at 451.372 kb on + strand, within BACOVA_03635at 451.435 kb on + strand, within BACOVA_03635at 451.444 kb on - strand, within BACOVA_03635at 451.445 kb on + strand, within BACOVA_03635at 451.446 kb on - strand, within BACOVA_03635at 451.504 kb on - strand, within BACOVA_03635at 451.541 kb on + strand, within BACOVA_03635at 451.541 kb on + strand, within BACOVA_03635at 451.542 kb on - strand, within BACOVA_03635at 451.545 kb on + strand, within BACOVA_03635at 451.546 kb on - strand, within BACOVA_03635at 451.560 kb on + strand, within BACOVA_03635at 451.561 kb on - strand, within BACOVA_03635at 451.561 kb on - strand, within BACOVA_03635at 451.562 kb on + strand, within BACOVA_03635at 451.578 kb on - strand, within BACOVA_03635at 451.589 kb on + strand, within BACOVA_03635at 451.660 kb on - strand, within BACOVA_03635at 451.673 kb on + strand, within BACOVA_03635at 451.681 kb on - strand, within BACOVA_03635at 451.798 kb on - strand, within BACOVA_03635at 451.827 kb on + strand, within BACOVA_03635at 451.834 kb on - strand, within BACOVA_03635at 451.984 kb on + strand, within BACOVA_03635at 451.986 kb on + strand, within BACOVA_03635at 451.986 kb on + strand, within BACOVA_03635at 451.987 kb on - strand, within BACOVA_03635at 451.987 kb on - strand, within BACOVA_03635at 452.004 kb on - strand, within BACOVA_03635at 452.010 kb on + strand, within BACOVA_03635at 452.037 kb on + strand, within BACOVA_03635at 452.037 kb on + strand, within BACOVA_03635at 452.037 kb on + strand, within BACOVA_03635at 452.048 kb on + strand, within BACOVA_03635at 452.084 kb on + strand, within BACOVA_03635at 452.085 kb on - strand, within BACOVA_03635at 452.155 kb on - strand, within BACOVA_03635at 452.156 kb on + strand, within BACOVA_03635at 452.161 kb on + strand, within BACOVA_03635at 452.222 kb on + strand, within BACOVA_03635at 452.223 kb on - strand, within BACOVA_03635at 452.294 kb on + strand, within BACOVA_03635at 452.301 kb on - strand, within BACOVA_03635at 452.380 kb on - strand, within BACOVA_03635at 452.476 kb on - strand, within BACOVA_03635at 452.476 kb on - strand, within BACOVA_03635at 452.490 kb on - strand, within BACOVA_03635at 452.490 kb on - strand, within BACOVA_03635at 452.521 kb on - strand, within BACOVA_03635at 452.555 kb on + strand, within BACOVA_03635at 452.579 kb on - strand, within BACOVA_03635at 452.585 kb on + strand, within BACOVA_03635at 452.750 kb on + strand, within BACOVA_03635at 452.897 kb on + strandat 452.898 kb on - strandat 452.898 kb on - strandat 452.916 kb on + strandat 452.916 kb on + strandat 452.917 kb on - strandat 452.917 kb on - strandat 452.991 kb on - strandat 452.999 kb on - strandat 452.999 kb on - strandat 453.034 kb on - strandat 453.036 kb on - strandat 453.036 kb on - strandat 453.039 kb on + strandat 453.039 kb on + strandat 453.039 kb on + strandat 453.039 kb on + strandat 453.039 kb on + strandat 453.039 kb on + strandat 453.039 kb on + strandat 453.040 kb on - strandat 453.040 kb on - strandat 453.040 kb on - strandat 453.041 kb on + strandat 453.041 kb on + strandat 453.041 kb on + strandat 453.041 kb on + strandat 453.041 kb on + strandat 453.041 kb on + strandat 453.041 kb on + strandat 453.042 kb on - strandat 453.042 kb on - strandat 453.042 kb on - strandat 453.042 kb on - strandat 453.065 kb on - strandat 453.148 kb on + strandat 453.148 kb on + strandat 453.148 kb on + strandat 453.153 kb on - strandat 453.204 kb on + strand, within BACOVA_03636at 453.204 kb on + strand, within BACOVA_03636at 453.204 kb on + strand, within BACOVA_03636at 453.205 kb on - strand, within BACOVA_03636at 453.243 kb on - strand, within BACOVA_03636at 453.325 kb on + strand, within BACOVA_03636at 453.349 kb on + strand, within BACOVA_03636at 453.349 kb on + strand, within BACOVA_03636at 453.350 kb on - strand, within BACOVA_03636at 453.423 kb on - strand, within BACOVA_03636at 453.459 kb on + strand, within BACOVA_03636at 453.460 kb on - strand, within BACOVA_03636at 453.498 kb on - strand, within BACOVA_03636at 453.548 kb on + strand, within BACOVA_03636at 453.548 kb on + strand, within BACOVA_03636at 453.573 kb on - strand, within BACOVA_03636at 453.617 kb on + strand, within BACOVA_03636at 453.660 kb on - strand, within BACOVA_03636at 453.672 kb on - strand, within BACOVA_03636at 453.696 kb on + strand, within BACOVA_03636at 453.699 kb on - strand, within BACOVA_03636at 453.728 kb on - strand, within BACOVA_03636at 453.731 kb on + strand, within BACOVA_03636at 453.823 kb on + strand, within BACOVA_03636at 453.824 kb on - strand, within BACOVA_03636at 453.836 kb on + strand, within BACOVA_03636at 453.854 kb on + strand, within BACOVA_03636at 453.855 kb on - strand, within BACOVA_03636at 453.855 kb on - strand, within BACOVA_03636at 453.855 kb on - strand, within BACOVA_03636at 453.855 kb on - strand, within BACOVA_03636at 453.868 kb on + strand, within BACOVA_03636at 453.869 kb on - strand, within BACOVA_03636at 453.911 kb on + strand, within BACOVA_03636at 453.912 kb on - strand, within BACOVA_03636at 453.941 kb on + strand, within BACOVA_03636at 453.965 kb on - strand, within BACOVA_03636at 453.968 kb on + strand, within BACOVA_03636

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic 2.5 mg/mL (C)
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450,081 + BACOVA_03634 0.70 -0.4
450,082 - BACOVA_03634 0.70 -2.1
450,093 - BACOVA_03634 0.71 +0.0
450,116 - BACOVA_03634 0.71 -0.5
450,137 - BACOVA_03634 0.72 -1.6
450,160 - BACOVA_03634 0.73 -0.4
450,195 + BACOVA_03634 0.74 +0.2
450,196 - BACOVA_03634 0.74 +0.1
450,196 - BACOVA_03634 0.74 -1.8
450,196 - BACOVA_03634 0.74 -0.8
450,260 + BACOVA_03634 0.76 -1.1
450,260 + BACOVA_03634 0.76 -0.9
450,261 - BACOVA_03634 0.76 -0.5
450,262 + BACOVA_03634 0.76 -0.4
450,304 + BACOVA_03634 0.77 +1.3
450,453 + BACOVA_03634 0.82 -0.1
450,454 - BACOVA_03634 0.82 -0.7
450,476 - BACOVA_03634 0.83 -0.3
450,596 - BACOVA_03634 0.86 -0.6
450,601 - BACOVA_03634 0.86 -1.1
450,603 + BACOVA_03634 0.86 -1.7
450,628 + BACOVA_03634 0.87 -2.0
450,736 + -0.2
450,747 - -1.0
450,859 - -1.6
450,878 - -2.2
450,901 + -0.7
450,902 - -0.1
450,902 - -3.1
450,902 - -0.2
450,902 - -0.7
450,906 - -0.8
450,909 + -1.1
450,910 - +0.2
450,955 + -1.8
450,956 - -0.9
450,957 + -0.2
450,957 + -0.6
450,958 - -1.7
451,012 - +0.5
451,030 + +0.2
451,031 - -0.8
451,045 - -1.4
451,049 + -0.9
451,049 + -1.8
451,050 - -0.7
451,056 - -0.9
451,071 - -0.2
451,090 + -1.9
451,112 + -1.1
451,151 + -0.4
451,152 - +0.2
451,154 + -1.5
451,319 + BACOVA_03635 0.14 -0.6
451,320 - BACOVA_03635 0.14 -1.5
451,372 + BACOVA_03635 0.16 -0.4
451,435 + BACOVA_03635 0.20 -1.8
451,444 - BACOVA_03635 0.20 +0.6
451,445 + BACOVA_03635 0.20 -1.1
451,446 - BACOVA_03635 0.20 -1.0
451,504 - BACOVA_03635 0.23 -0.4
451,541 + BACOVA_03635 0.25 -0.2
451,541 + BACOVA_03635 0.25 -1.1
451,542 - BACOVA_03635 0.25 -2.0
451,545 + BACOVA_03635 0.25 -0.4
451,546 - BACOVA_03635 0.25 -1.6
451,560 + BACOVA_03635 0.26 -0.9
451,561 - BACOVA_03635 0.26 -1.3
451,561 - BACOVA_03635 0.26 -1.0
451,562 + BACOVA_03635 0.26 -1.7
451,578 - BACOVA_03635 0.27 -0.8
451,589 + BACOVA_03635 0.28 -0.0
451,660 - BACOVA_03635 0.31 -1.6
451,673 + BACOVA_03635 0.32 +0.9
451,681 - BACOVA_03635 0.32 -0.7
451,798 - BACOVA_03635 0.38 +1.4
451,827 + BACOVA_03635 0.40 +0.3
451,834 - BACOVA_03635 0.40 -1.6
451,984 + BACOVA_03635 0.48 -0.5
451,986 + BACOVA_03635 0.48 -1.1
451,986 + BACOVA_03635 0.48 -2.2
451,987 - BACOVA_03635 0.48 -1.1
451,987 - BACOVA_03635 0.48 -1.2
452,004 - BACOVA_03635 0.49 -0.0
452,010 + BACOVA_03635 0.49 -0.7
452,037 + BACOVA_03635 0.51 -0.7
452,037 + BACOVA_03635 0.51 -0.9
452,037 + BACOVA_03635 0.51 +0.1
452,048 + BACOVA_03635 0.51 -1.5
452,084 + BACOVA_03635 0.53 +0.1
452,085 - BACOVA_03635 0.53 -1.7
452,155 - BACOVA_03635 0.57 +1.0
452,156 + BACOVA_03635 0.57 -0.9
452,161 + BACOVA_03635 0.57 -1.5
452,222 + BACOVA_03635 0.60 -1.1
452,223 - BACOVA_03635 0.60 -0.4
452,294 + BACOVA_03635 0.64 -0.3
452,301 - BACOVA_03635 0.65 -1.2
452,380 - BACOVA_03635 0.69 -1.8
452,476 - BACOVA_03635 0.74 -0.5
452,476 - BACOVA_03635 0.74 -1.6
452,490 - BACOVA_03635 0.74 -0.2
452,490 - BACOVA_03635 0.74 -0.4
452,521 - BACOVA_03635 0.76 +0.7
452,555 + BACOVA_03635 0.78 -1.3
452,579 - BACOVA_03635 0.79 -0.0
452,585 + BACOVA_03635 0.79 -1.0
452,750 + BACOVA_03635 0.88 +0.1
452,897 + -0.6
452,898 - -0.4
452,898 - -1.6
452,916 + -0.3
452,916 + -1.3
452,917 - +0.7
452,917 - -0.4
452,991 - +0.1
452,999 - -1.1
452,999 - -0.1
453,034 - -1.7
453,036 - -1.1
453,036 - +0.7
453,039 + +0.2
453,039 + +1.5
453,039 + +1.1
453,039 + -0.7
453,039 + +0.6
453,039 + +1.3
453,039 + -0.7
453,040 - -0.9
453,040 - +0.3
453,040 - -2.8
453,041 + -0.5
453,041 + +0.7
453,041 + +0.8
453,041 + -0.1
453,041 + -0.3
453,041 + +0.7
453,041 + -0.2
453,042 - -0.6
453,042 - -0.7
453,042 - -0.9
453,042 - -0.7
453,065 - -0.7
453,148 + -0.2
453,148 + -0.8
453,148 + -2.5
453,153 - -2.8
453,204 + BACOVA_03636 0.10 +0.3
453,204 + BACOVA_03636 0.10 +0.0
453,204 + BACOVA_03636 0.10 -0.2
453,205 - BACOVA_03636 0.11 +0.3
453,243 - BACOVA_03636 0.13 +0.9
453,325 + BACOVA_03636 0.18 +1.4
453,349 + BACOVA_03636 0.20 +0.3
453,349 + BACOVA_03636 0.20 +0.1
453,350 - BACOVA_03636 0.20 -0.9
453,423 - BACOVA_03636 0.25 +0.1
453,459 + BACOVA_03636 0.27 +1.0
453,460 - BACOVA_03636 0.27 +2.1
453,498 - BACOVA_03636 0.30 -0.2
453,548 + BACOVA_03636 0.33 +0.5
453,548 + BACOVA_03636 0.33 +0.1
453,573 - BACOVA_03636 0.34 +0.2
453,617 + BACOVA_03636 0.37 -0.3
453,660 - BACOVA_03636 0.40 -0.8
453,672 - BACOVA_03636 0.41 -0.4
453,696 + BACOVA_03636 0.42 -0.3
453,699 - BACOVA_03636 0.43 +0.6
453,728 - BACOVA_03636 0.44 -0.3
453,731 + BACOVA_03636 0.45 -0.1
453,823 + BACOVA_03636 0.51 +0.6
453,824 - BACOVA_03636 0.51 +0.4
453,836 + BACOVA_03636 0.51 -0.9
453,854 + BACOVA_03636 0.53 -1.1
453,855 - BACOVA_03636 0.53 -0.4
453,855 - BACOVA_03636 0.53 -0.0
453,855 - BACOVA_03636 0.53 -0.3
453,855 - BACOVA_03636 0.53 -0.1
453,868 + BACOVA_03636 0.53 +0.2
453,869 - BACOVA_03636 0.54 +0.7
453,911 + BACOVA_03636 0.56 +0.1
453,912 - BACOVA_03636 0.56 -0.9
453,941 + BACOVA_03636 0.58 -0.9
453,965 - BACOVA_03636 0.60 -0.7
453,968 + BACOVA_03636 0.60 -0.9

Or see this region's nucleotide sequence