Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03468

Experiment: polygalacturonic 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03467 and BACOVA_03468 overlap by 8 nucleotidesBACOVA_03468 and BACOVA_03469 overlap by 29 nucleotides BACOVA_03467: BACOVA_03467 - outer membrane insertion signal domain protein, at 211,205 to 212,716 _03467 BACOVA_03468: BACOVA_03468 - hypothetical protein, at 212,709 to 213,974 _03468 BACOVA_03469: BACOVA_03469 - TonB-dependent receptor, at 213,946 to 216,783 _03469 Position (kb) 212 213 214Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 211.740 kb on - strand, within BACOVA_03467at 211.837 kb on + strand, within BACOVA_03467at 211.868 kb on - strand, within BACOVA_03467at 211.899 kb on + strand, within BACOVA_03467at 211.900 kb on - strand, within BACOVA_03467at 211.900 kb on - strand, within BACOVA_03467at 211.900 kb on - strand, within BACOVA_03467at 211.905 kb on + strand, within BACOVA_03467at 211.921 kb on - strand, within BACOVA_03467at 212.032 kb on - strand, within BACOVA_03467at 212.032 kb on - strand, within BACOVA_03467at 212.040 kb on + strand, within BACOVA_03467at 212.044 kb on + strand, within BACOVA_03467at 212.044 kb on + strand, within BACOVA_03467at 212.044 kb on + strand, within BACOVA_03467at 212.044 kb on + strand, within BACOVA_03467at 212.045 kb on - strand, within BACOVA_03467at 212.045 kb on - strand, within BACOVA_03467at 212.071 kb on - strand, within BACOVA_03467at 212.153 kb on - strand, within BACOVA_03467at 212.167 kb on - strand, within BACOVA_03467at 212.209 kb on + strand, within BACOVA_03467at 212.288 kb on - strand, within BACOVA_03467at 212.317 kb on - strand, within BACOVA_03467at 212.332 kb on + strand, within BACOVA_03467at 212.332 kb on + strand, within BACOVA_03467at 212.401 kb on + strand, within BACOVA_03467at 212.401 kb on + strand, within BACOVA_03467at 212.402 kb on - strand, within BACOVA_03467at 212.511 kb on + strand, within BACOVA_03467at 212.514 kb on + strand, within BACOVA_03467at 212.514 kb on + strand, within BACOVA_03467at 212.514 kb on + strand, within BACOVA_03467at 212.515 kb on - strand, within BACOVA_03467at 212.573 kb on - strandat 212.573 kb on - strandat 212.587 kb on + strandat 212.621 kb on - strandat 212.672 kb on + strandat 212.673 kb on - strandat 212.691 kb on - strandat 212.693 kb on - strandat 212.694 kb on + strandat 212.696 kb on + strandat 212.697 kb on - strandat 212.697 kb on - strandat 212.750 kb on + strandat 212.766 kb on - strandat 212.775 kb on + strandat 212.822 kb on - strandat 212.822 kb on - strandat 212.823 kb on + strandat 212.824 kb on - strandat 212.861 kb on - strand, within BACOVA_03468at 212.895 kb on - strand, within BACOVA_03468at 212.915 kb on - strand, within BACOVA_03468at 212.917 kb on + strand, within BACOVA_03468at 212.917 kb on + strand, within BACOVA_03468at 212.917 kb on + strand, within BACOVA_03468at 212.920 kb on - strand, within BACOVA_03468at 212.959 kb on - strand, within BACOVA_03468at 212.972 kb on + strand, within BACOVA_03468at 212.973 kb on - strand, within BACOVA_03468at 213.070 kb on - strand, within BACOVA_03468at 213.111 kb on + strand, within BACOVA_03468at 213.121 kb on + strand, within BACOVA_03468at 213.160 kb on + strand, within BACOVA_03468at 213.161 kb on - strand, within BACOVA_03468at 213.190 kb on + strand, within BACOVA_03468at 213.191 kb on - strand, within BACOVA_03468at 213.195 kb on + strand, within BACOVA_03468at 213.195 kb on + strand, within BACOVA_03468at 213.332 kb on + strand, within BACOVA_03468at 213.366 kb on - strand, within BACOVA_03468at 213.399 kb on + strand, within BACOVA_03468at 213.404 kb on + strand, within BACOVA_03468at 213.405 kb on - strand, within BACOVA_03468at 213.422 kb on - strand, within BACOVA_03468at 213.422 kb on - strand, within BACOVA_03468at 213.444 kb on + strand, within BACOVA_03468at 213.445 kb on - strand, within BACOVA_03468at 213.450 kb on - strand, within BACOVA_03468at 213.458 kb on - strand, within BACOVA_03468at 213.479 kb on + strand, within BACOVA_03468at 213.493 kb on + strand, within BACOVA_03468at 213.548 kb on - strand, within BACOVA_03468at 213.607 kb on - strand, within BACOVA_03468at 213.639 kb on + strand, within BACOVA_03468at 213.682 kb on - strand, within BACOVA_03468at 213.688 kb on + strand, within BACOVA_03468at 213.692 kb on + strand, within BACOVA_03468at 213.692 kb on + strand, within BACOVA_03468at 213.738 kb on - strand, within BACOVA_03468at 213.745 kb on + strand, within BACOVA_03468at 213.745 kb on + strand, within BACOVA_03468at 213.778 kb on - strand, within BACOVA_03468at 213.821 kb on - strand, within BACOVA_03468at 213.822 kb on + strand, within BACOVA_03468at 213.822 kb on + strand, within BACOVA_03468at 213.823 kb on - strand, within BACOVA_03468at 213.823 kb on - strand, within BACOVA_03468at 213.823 kb on - strand, within BACOVA_03468at 213.873 kb on - strandat 213.915 kb on + strandat 213.916 kb on - strandat 213.916 kb on - strandat 213.921 kb on + strandat 213.921 kb on + strandat 213.921 kb on + strandat 213.925 kb on + strandat 213.943 kb on + strandat 213.948 kb on - strandat 213.967 kb on - strandat 214.003 kb on + strandat 214.029 kb on - strandat 214.073 kb on - strandat 214.076 kb on + strandat 214.077 kb on - strandat 214.098 kb on + strandat 214.105 kb on - strandat 214.118 kb on + strandat 214.146 kb on + strandat 214.147 kb on - strandat 214.147 kb on - strandat 214.147 kb on - strandat 214.227 kb on + strandat 214.241 kb on + strand, within BACOVA_03469at 214.242 kb on - strand, within BACOVA_03469at 214.242 kb on - strand, within BACOVA_03469at 214.242 kb on - strand, within BACOVA_03469at 214.265 kb on + strand, within BACOVA_03469at 214.265 kb on + strand, within BACOVA_03469at 214.265 kb on + strand, within BACOVA_03469at 214.280 kb on + strand, within BACOVA_03469at 214.440 kb on + strand, within BACOVA_03469at 214.505 kb on + strand, within BACOVA_03469at 214.509 kb on + strand, within BACOVA_03469at 214.514 kb on - strand, within BACOVA_03469at 214.517 kb on + strand, within BACOVA_03469at 214.577 kb on - strand, within BACOVA_03469at 214.593 kb on - strand, within BACOVA_03469at 214.599 kb on + strand, within BACOVA_03469at 214.599 kb on + strand, within BACOVA_03469at 214.602 kb on - strand, within BACOVA_03469at 214.605 kb on + strand, within BACOVA_03469at 214.605 kb on + strand, within BACOVA_03469at 214.752 kb on + strand, within BACOVA_03469at 214.752 kb on + strand, within BACOVA_03469at 214.752 kb on + strand, within BACOVA_03469at 214.753 kb on - strand, within BACOVA_03469at 214.753 kb on - strand, within BACOVA_03469at 214.783 kb on + strand, within BACOVA_03469at 214.784 kb on - strand, within BACOVA_03469at 214.787 kb on + strand, within BACOVA_03469at 214.787 kb on + strand, within BACOVA_03469at 214.811 kb on - strand, within BACOVA_03469at 214.868 kb on + strand, within BACOVA_03469at 214.868 kb on + strand, within BACOVA_03469at 214.881 kb on + strand, within BACOVA_03469at 214.881 kb on + strand, within BACOVA_03469at 214.883 kb on + strand, within BACOVA_03469at 214.883 kb on + strand, within BACOVA_03469at 214.884 kb on - strand, within BACOVA_03469at 214.887 kb on + strand, within BACOVA_03469at 214.888 kb on - strand, within BACOVA_03469at 214.888 kb on - strand, within BACOVA_03469at 214.895 kb on + strand, within BACOVA_03469at 214.895 kb on + strand, within BACOVA_03469

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic 2.5 mg/mL (C)
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211,740 - BACOVA_03467 0.35 -1.5
211,837 + BACOVA_03467 0.42 -0.1
211,868 - BACOVA_03467 0.44 -1.0
211,899 + BACOVA_03467 0.46 -0.1
211,900 - BACOVA_03467 0.46 -1.4
211,900 - BACOVA_03467 0.46 -0.1
211,900 - BACOVA_03467 0.46 +0.1
211,905 + BACOVA_03467 0.46 -0.6
211,921 - BACOVA_03467 0.47 -1.3
212,032 - BACOVA_03467 0.55 +0.5
212,032 - BACOVA_03467 0.55 +2.1
212,040 + BACOVA_03467 0.55 -1.2
212,044 + BACOVA_03467 0.55 -1.2
212,044 + BACOVA_03467 0.55 -0.5
212,044 + BACOVA_03467 0.55 -0.8
212,044 + BACOVA_03467 0.55 +0.5
212,045 - BACOVA_03467 0.56 -1.7
212,045 - BACOVA_03467 0.56 +0.3
212,071 - BACOVA_03467 0.57 +0.2
212,153 - BACOVA_03467 0.63 -0.7
212,167 - BACOVA_03467 0.64 -0.1
212,209 + BACOVA_03467 0.66 -0.1
212,288 - BACOVA_03467 0.72 -1.5
212,317 - BACOVA_03467 0.74 +0.4
212,332 + BACOVA_03467 0.75 +1.3
212,332 + BACOVA_03467 0.75 -0.4
212,401 + BACOVA_03467 0.79 +1.7
212,401 + BACOVA_03467 0.79 +0.0
212,402 - BACOVA_03467 0.79 -0.1
212,511 + BACOVA_03467 0.86 +0.4
212,514 + BACOVA_03467 0.87 -0.0
212,514 + BACOVA_03467 0.87 +0.5
212,514 + BACOVA_03467 0.87 +0.0
212,515 - BACOVA_03467 0.87 -1.1
212,573 - -0.9
212,573 - -0.6
212,587 + -0.7
212,621 - +0.9
212,672 + +0.3
212,673 - -0.2
212,691 - +0.8
212,693 - +0.9
212,694 + +0.1
212,696 + -0.7
212,697 - -0.1
212,697 - -0.5
212,750 + +0.3
212,766 - -2.6
212,775 + -0.7
212,822 - -1.4
212,822 - -1.2
212,823 + -0.4
212,824 - +0.4
212,861 - BACOVA_03468 0.12 -0.2
212,895 - BACOVA_03468 0.15 -1.1
212,915 - BACOVA_03468 0.16 +0.5
212,917 + BACOVA_03468 0.16 -0.5
212,917 + BACOVA_03468 0.16 -0.2
212,917 + BACOVA_03468 0.16 +1.6
212,920 - BACOVA_03468 0.17 -0.7
212,959 - BACOVA_03468 0.20 -0.1
212,972 + BACOVA_03468 0.21 -0.2
212,973 - BACOVA_03468 0.21 -0.0
213,070 - BACOVA_03468 0.29 -0.7
213,111 + BACOVA_03468 0.32 -0.9
213,121 + BACOVA_03468 0.33 -0.9
213,160 + BACOVA_03468 0.36 -0.9
213,161 - BACOVA_03468 0.36 -1.6
213,190 + BACOVA_03468 0.38 -0.2
213,191 - BACOVA_03468 0.38 -1.5
213,195 + BACOVA_03468 0.38 -1.5
213,195 + BACOVA_03468 0.38 +0.1
213,332 + BACOVA_03468 0.49 +0.4
213,366 - BACOVA_03468 0.52 -0.2
213,399 + BACOVA_03468 0.55 -0.2
213,404 + BACOVA_03468 0.55 +0.1
213,405 - BACOVA_03468 0.55 -0.3
213,422 - BACOVA_03468 0.56 -1.0
213,422 - BACOVA_03468 0.56 -0.7
213,444 + BACOVA_03468 0.58 -0.6
213,445 - BACOVA_03468 0.58 +1.4
213,450 - BACOVA_03468 0.59 -1.7
213,458 - BACOVA_03468 0.59 -0.6
213,479 + BACOVA_03468 0.61 +0.3
213,493 + BACOVA_03468 0.62 -0.4
213,548 - BACOVA_03468 0.66 -0.6
213,607 - BACOVA_03468 0.71 -0.6
213,639 + BACOVA_03468 0.73 +0.8
213,682 - BACOVA_03468 0.77 +0.1
213,688 + BACOVA_03468 0.77 -0.5
213,692 + BACOVA_03468 0.78 +0.1
213,692 + BACOVA_03468 0.78 +0.2
213,738 - BACOVA_03468 0.81 -0.4
213,745 + BACOVA_03468 0.82 -1.6
213,745 + BACOVA_03468 0.82 -0.8
213,778 - BACOVA_03468 0.84 +0.5
213,821 - BACOVA_03468 0.88 +0.2
213,822 + BACOVA_03468 0.88 +0.5
213,822 + BACOVA_03468 0.88 +0.7
213,823 - BACOVA_03468 0.88 -1.0
213,823 - BACOVA_03468 0.88 -0.6
213,823 - BACOVA_03468 0.88 +0.6
213,873 - -0.4
213,915 + -0.6
213,916 - -1.6
213,916 - -0.8
213,921 + -1.9
213,921 + -0.4
213,921 + -0.5
213,925 + -0.2
213,943 + -0.7
213,948 - -0.1
213,967 - -0.3
214,003 + -0.0
214,029 - -1.4
214,073 - -1.7
214,076 + -0.3
214,077 - -0.4
214,098 + +2.4
214,105 - -0.7
214,118 + +0.1
214,146 + +0.1
214,147 - -2.3
214,147 - -3.1
214,147 - -0.5
214,227 + -0.2
214,241 + BACOVA_03469 0.10 -0.2
214,242 - BACOVA_03469 0.10 +0.0
214,242 - BACOVA_03469 0.10 +0.2
214,242 - BACOVA_03469 0.10 -1.7
214,265 + BACOVA_03469 0.11 +0.0
214,265 + BACOVA_03469 0.11 -0.4
214,265 + BACOVA_03469 0.11 +0.1
214,280 + BACOVA_03469 0.12 +0.7
214,440 + BACOVA_03469 0.17 +0.0
214,505 + BACOVA_03469 0.20 -0.5
214,509 + BACOVA_03469 0.20 -0.4
214,514 - BACOVA_03469 0.20 -0.1
214,517 + BACOVA_03469 0.20 -0.3
214,577 - BACOVA_03469 0.22 -0.7
214,593 - BACOVA_03469 0.23 -0.4
214,599 + BACOVA_03469 0.23 -0.2
214,599 + BACOVA_03469 0.23 +0.6
214,602 - BACOVA_03469 0.23 +1.1
214,605 + BACOVA_03469 0.23 +0.2
214,605 + BACOVA_03469 0.23 -0.6
214,752 + BACOVA_03469 0.28 -0.4
214,752 + BACOVA_03469 0.28 -0.0
214,752 + BACOVA_03469 0.28 +1.1
214,753 - BACOVA_03469 0.28 -1.7
214,753 - BACOVA_03469 0.28 -0.3
214,783 + BACOVA_03469 0.29 -0.1
214,784 - BACOVA_03469 0.30 +0.6
214,787 + BACOVA_03469 0.30 -1.4
214,787 + BACOVA_03469 0.30 -0.5
214,811 - BACOVA_03469 0.30 +1.1
214,868 + BACOVA_03469 0.32 +0.0
214,868 + BACOVA_03469 0.32 +0.2
214,881 + BACOVA_03469 0.33 -1.1
214,881 + BACOVA_03469 0.33 -0.8
214,883 + BACOVA_03469 0.33 -0.2
214,883 + BACOVA_03469 0.33 +0.3
214,884 - BACOVA_03469 0.33 -0.5
214,887 + BACOVA_03469 0.33 -1.5
214,888 - BACOVA_03469 0.33 +0.4
214,888 - BACOVA_03469 0.33 -0.2
214,895 + BACOVA_03469 0.33 -0.7
214,895 + BACOVA_03469 0.33 -1.2

Or see this region's nucleotide sequence