Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03175

Experiment: polygalacturonic 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03172 and BACOVA_03173 are separated by 1 nucleotidesBACOVA_03173 and BACOVA_03175 are separated by 26 nucleotidesBACOVA_03175 and BACOVA_03174 overlap by 26 nucleotidesBACOVA_03174 and BACOVA_03176 overlap by 4 nucleotidesBACOVA_03176 and BACOVA_03177 are separated by 19 nucleotides BACOVA_03172: BACOVA_03172 - TonB-dependent receptor, at 259,565 to 262,267 _03172 BACOVA_03173: BACOVA_03173 - sigma factor regulatory protein, FecR/PupR family, at 262,269 to 263,147 _03173 BACOVA_03175: BACOVA_03175 - hypothetical protein, at 263,174 to 263,608 _03175 BACOVA_03174: BACOVA_03174 - hypothetical protein, at 263,583 to 263,699 _03174 BACOVA_03176: BACOVA_03176 - RNA polymerase sigma-70 factor, at 263,696 to 264,250 _03176 BACOVA_03177: BACOVA_03177 - putative oxygen-independent coproporphyrinogen III oxidase, at 264,270 to 265,277 _03177 Position (kb) 263 264Strain fitness (log2 ratio) -3 -2 -1 0 1at 262.187 kb on + strandat 262.187 kb on + strandat 262.187 kb on + strandat 262.187 kb on + strandat 262.188 kb on - strandat 262.257 kb on - strandat 262.259 kb on + strandat 262.262 kb on - strandat 262.270 kb on + strandat 262.289 kb on + strandat 262.289 kb on + strandat 262.334 kb on + strandat 262.338 kb on + strandat 262.342 kb on - strandat 262.347 kb on + strandat 262.347 kb on + strandat 262.347 kb on + strandat 262.347 kb on + strandat 262.419 kb on + strand, within BACOVA_03173at 262.490 kb on + strand, within BACOVA_03173at 262.490 kb on + strand, within BACOVA_03173at 262.490 kb on + strand, within BACOVA_03173at 262.491 kb on - strand, within BACOVA_03173at 262.560 kb on + strand, within BACOVA_03173at 262.561 kb on - strand, within BACOVA_03173at 262.565 kb on + strand, within BACOVA_03173at 262.565 kb on + strand, within BACOVA_03173at 262.568 kb on + strand, within BACOVA_03173at 262.568 kb on + strand, within BACOVA_03173at 262.568 kb on + strand, within BACOVA_03173at 262.568 kb on + strand, within BACOVA_03173at 262.568 kb on + strand, within BACOVA_03173at 262.569 kb on - strand, within BACOVA_03173at 262.570 kb on + strand, within BACOVA_03173at 262.571 kb on - strand, within BACOVA_03173at 262.571 kb on - strand, within BACOVA_03173at 262.572 kb on + strand, within BACOVA_03173at 262.573 kb on - strand, within BACOVA_03173at 262.574 kb on + strand, within BACOVA_03173at 262.574 kb on + strand, within BACOVA_03173at 262.574 kb on + strand, within BACOVA_03173at 262.575 kb on - strand, within BACOVA_03173at 262.575 kb on - strand, within BACOVA_03173at 262.620 kb on - strand, within BACOVA_03173at 262.648 kb on - strand, within BACOVA_03173at 262.659 kb on + strand, within BACOVA_03173at 262.659 kb on + strand, within BACOVA_03173at 262.678 kb on + strand, within BACOVA_03173at 262.678 kb on + strand, within BACOVA_03173at 262.679 kb on - strand, within BACOVA_03173at 262.679 kb on - strand, within BACOVA_03173at 262.679 kb on - strand, within BACOVA_03173at 262.788 kb on + strand, within BACOVA_03173at 262.789 kb on - strand, within BACOVA_03173at 262.934 kb on + strand, within BACOVA_03173at 262.936 kb on + strand, within BACOVA_03173at 262.936 kb on + strand, within BACOVA_03173at 262.936 kb on + strand, within BACOVA_03173at 262.937 kb on - strand, within BACOVA_03173at 262.938 kb on + strand, within BACOVA_03173at 262.938 kb on + strand, within BACOVA_03173at 262.940 kb on + strand, within BACOVA_03173at 262.942 kb on + strand, within BACOVA_03173at 262.974 kb on + strand, within BACOVA_03173at 263.043 kb on + strand, within BACOVA_03173at 263.044 kb on - strand, within BACOVA_03173at 263.115 kb on + strandat 263.125 kb on - strandat 263.162 kb on - strandat 263.265 kb on - strand, within BACOVA_03175at 263.294 kb on - strand, within BACOVA_03175at 263.348 kb on + strand, within BACOVA_03175at 263.349 kb on - strand, within BACOVA_03175at 263.349 kb on - strand, within BACOVA_03175at 263.390 kb on + strand, within BACOVA_03175at 263.393 kb on + strand, within BACOVA_03175at 263.393 kb on + strand, within BACOVA_03175at 263.474 kb on + strand, within BACOVA_03175at 263.475 kb on - strand, within BACOVA_03175at 263.475 kb on - strand, within BACOVA_03175at 263.475 kb on - strand, within BACOVA_03175at 263.506 kb on - strand, within BACOVA_03175at 263.636 kb on - strand, within BACOVA_03174at 263.768 kb on - strand, within BACOVA_03176at 263.779 kb on + strand, within BACOVA_03176at 263.796 kb on - strand, within BACOVA_03176at 263.803 kb on + strand, within BACOVA_03176at 263.804 kb on - strand, within BACOVA_03176at 263.806 kb on - strand, within BACOVA_03176at 263.837 kb on + strand, within BACOVA_03176at 263.845 kb on + strand, within BACOVA_03176at 263.846 kb on - strand, within BACOVA_03176at 263.881 kb on - strand, within BACOVA_03176at 263.925 kb on + strand, within BACOVA_03176at 263.926 kb on - strand, within BACOVA_03176at 263.967 kb on + strand, within BACOVA_03176at 263.967 kb on + strand, within BACOVA_03176at 263.967 kb on + strand, within BACOVA_03176at 263.967 kb on + strand, within BACOVA_03176at 263.968 kb on - strand, within BACOVA_03176at 263.994 kb on + strand, within BACOVA_03176at 264.030 kb on + strand, within BACOVA_03176at 264.030 kb on + strand, within BACOVA_03176at 264.031 kb on - strand, within BACOVA_03176at 264.037 kb on - strand, within BACOVA_03176at 264.064 kb on + strand, within BACOVA_03176at 264.132 kb on + strand, within BACOVA_03176at 264.133 kb on - strand, within BACOVA_03176at 264.133 kb on - strand, within BACOVA_03176at 264.135 kb on + strand, within BACOVA_03176at 264.136 kb on - strand, within BACOVA_03176at 264.136 kb on - strand, within BACOVA_03176at 264.138 kb on + strand, within BACOVA_03176at 264.138 kb on + strand, within BACOVA_03176at 264.138 kb on + strand, within BACOVA_03176at 264.138 kb on + strand, within BACOVA_03176at 264.138 kb on + strand, within BACOVA_03176at 264.138 kb on + strand, within BACOVA_03176at 264.138 kb on + strand, within BACOVA_03176at 264.139 kb on - strand, within BACOVA_03176at 264.139 kb on - strand, within BACOVA_03176at 264.285 kb on + strandat 264.286 kb on - strandat 264.297 kb on + strandat 264.297 kb on + strandat 264.298 kb on - strandat 264.299 kb on + strandat 264.299 kb on + strandat 264.299 kb on + strandat 264.299 kb on + strandat 264.300 kb on - strandat 264.362 kb on + strandat 264.443 kb on + strand, within BACOVA_03177at 264.443 kb on + strand, within BACOVA_03177at 264.444 kb on - strand, within BACOVA_03177at 264.444 kb on - strand, within BACOVA_03177at 264.444 kb on - strand, within BACOVA_03177at 264.479 kb on + strand, within BACOVA_03177at 264.511 kb on + strand, within BACOVA_03177at 264.512 kb on - strand, within BACOVA_03177at 264.543 kb on + strand, within BACOVA_03177at 264.543 kb on + strand, within BACOVA_03177at 264.545 kb on + strand, within BACOVA_03177at 264.546 kb on - strand, within BACOVA_03177at 264.546 kb on - strand, within BACOVA_03177at 264.552 kb on + strand, within BACOVA_03177at 264.552 kb on + strand, within BACOVA_03177at 264.554 kb on + strand, within BACOVA_03177at 264.554 kb on + strand, within BACOVA_03177at 264.556 kb on + strand, within BACOVA_03177at 264.556 kb on + strand, within BACOVA_03177at 264.557 kb on - strand, within BACOVA_03177at 264.557 kb on - strand, within BACOVA_03177

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic 2.5 mg/mL (C)
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262,187 + +0.2
262,187 + -0.1
262,187 + +0.7
262,187 + -0.7
262,188 - -1.8
262,257 - -1.7
262,259 + +0.2
262,262 - -0.8
262,270 + +0.1
262,289 + -0.3
262,289 + -0.3
262,334 + +0.2
262,338 + +0.3
262,342 - -2.8
262,347 + +0.6
262,347 + +0.3
262,347 + -0.3
262,347 + -0.5
262,419 + BACOVA_03173 0.17 -0.4
262,490 + BACOVA_03173 0.25 -0.1
262,490 + BACOVA_03173 0.25 -0.8
262,490 + BACOVA_03173 0.25 +0.5
262,491 - BACOVA_03173 0.25 +1.3
262,560 + BACOVA_03173 0.33 -0.5
262,561 - BACOVA_03173 0.33 -1.8
262,565 + BACOVA_03173 0.34 -0.4
262,565 + BACOVA_03173 0.34 -1.0
262,568 + BACOVA_03173 0.34 -0.3
262,568 + BACOVA_03173 0.34 +0.3
262,568 + BACOVA_03173 0.34 +0.5
262,568 + BACOVA_03173 0.34 +0.1
262,568 + BACOVA_03173 0.34 -0.3
262,569 - BACOVA_03173 0.34 -0.7
262,570 + BACOVA_03173 0.34 +0.7
262,571 - BACOVA_03173 0.34 -2.3
262,571 - BACOVA_03173 0.34 -1.3
262,572 + BACOVA_03173 0.34 +0.2
262,573 - BACOVA_03173 0.35 -0.3
262,574 + BACOVA_03173 0.35 +0.0
262,574 + BACOVA_03173 0.35 -0.9
262,574 + BACOVA_03173 0.35 -0.2
262,575 - BACOVA_03173 0.35 -0.7
262,575 - BACOVA_03173 0.35 -1.0
262,620 - BACOVA_03173 0.40 -0.5
262,648 - BACOVA_03173 0.43 -0.9
262,659 + BACOVA_03173 0.44 +0.9
262,659 + BACOVA_03173 0.44 +0.2
262,678 + BACOVA_03173 0.47 -0.3
262,678 + BACOVA_03173 0.47 +0.7
262,679 - BACOVA_03173 0.47 -0.3
262,679 - BACOVA_03173 0.47 -0.7
262,679 - BACOVA_03173 0.47 -1.1
262,788 + BACOVA_03173 0.59 -0.1
262,789 - BACOVA_03173 0.59 -0.3
262,934 + BACOVA_03173 0.76 +0.0
262,936 + BACOVA_03173 0.76 +0.6
262,936 + BACOVA_03173 0.76 +0.4
262,936 + BACOVA_03173 0.76 +0.3
262,937 - BACOVA_03173 0.76 -0.6
262,938 + BACOVA_03173 0.76 -0.0
262,938 + BACOVA_03173 0.76 +1.7
262,940 + BACOVA_03173 0.76 -0.2
262,942 + BACOVA_03173 0.77 +0.7
262,974 + BACOVA_03173 0.80 -2.0
263,043 + BACOVA_03173 0.88 +0.1
263,044 - BACOVA_03173 0.88 +0.4
263,115 + +0.6
263,125 - -1.1
263,162 - -1.1
263,265 - BACOVA_03175 0.21 -0.6
263,294 - BACOVA_03175 0.28 -3.3
263,348 + BACOVA_03175 0.40 +0.1
263,349 - BACOVA_03175 0.40 -0.8
263,349 - BACOVA_03175 0.40 -1.3
263,390 + BACOVA_03175 0.50 -0.6
263,393 + BACOVA_03175 0.50 +0.9
263,393 + BACOVA_03175 0.50 -0.4
263,474 + BACOVA_03175 0.69 -0.8
263,475 - BACOVA_03175 0.69 -0.1
263,475 - BACOVA_03175 0.69 -1.6
263,475 - BACOVA_03175 0.69 -2.0
263,506 - BACOVA_03175 0.76 -1.1
263,636 - BACOVA_03174 0.45 -0.3
263,768 - BACOVA_03176 0.13 -1.5
263,779 + BACOVA_03176 0.15 -0.6
263,796 - BACOVA_03176 0.18 -0.4
263,803 + BACOVA_03176 0.19 +0.6
263,804 - BACOVA_03176 0.19 -0.9
263,806 - BACOVA_03176 0.20 -1.9
263,837 + BACOVA_03176 0.25 +0.7
263,845 + BACOVA_03176 0.27 +0.6
263,846 - BACOVA_03176 0.27 -2.7
263,881 - BACOVA_03176 0.33 -0.4
263,925 + BACOVA_03176 0.41 -0.0
263,926 - BACOVA_03176 0.41 -0.8
263,967 + BACOVA_03176 0.49 -0.2
263,967 + BACOVA_03176 0.49 +0.8
263,967 + BACOVA_03176 0.49 +0.9
263,967 + BACOVA_03176 0.49 +1.1
263,968 - BACOVA_03176 0.49 -0.1
263,994 + BACOVA_03176 0.54 +1.0
264,030 + BACOVA_03176 0.60 +0.8
264,030 + BACOVA_03176 0.60 -0.0
264,031 - BACOVA_03176 0.60 +1.1
264,037 - BACOVA_03176 0.61 -0.4
264,064 + BACOVA_03176 0.66 -0.1
264,132 + BACOVA_03176 0.79 +0.2
264,133 - BACOVA_03176 0.79 -2.7
264,133 - BACOVA_03176 0.79 -0.3
264,135 + BACOVA_03176 0.79 -0.4
264,136 - BACOVA_03176 0.79 -0.9
264,136 - BACOVA_03176 0.79 -0.2
264,138 + BACOVA_03176 0.80 -0.3
264,138 + BACOVA_03176 0.80 -0.2
264,138 + BACOVA_03176 0.80 +0.8
264,138 + BACOVA_03176 0.80 -1.9
264,138 + BACOVA_03176 0.80 +1.4
264,138 + BACOVA_03176 0.80 +0.1
264,138 + BACOVA_03176 0.80 -1.2
264,139 - BACOVA_03176 0.80 -0.1
264,139 - BACOVA_03176 0.80 +0.5
264,285 + -1.2
264,286 - -0.7
264,297 + -3.5
264,297 + -0.1
264,298 - -2.2
264,299 + +0.3
264,299 + +0.2
264,299 + +0.4
264,299 + -0.8
264,300 - +0.2
264,362 + +0.8
264,443 + BACOVA_03177 0.17 -0.3
264,443 + BACOVA_03177 0.17 -0.2
264,444 - BACOVA_03177 0.17 -1.1
264,444 - BACOVA_03177 0.17 -0.9
264,444 - BACOVA_03177 0.17 -1.8
264,479 + BACOVA_03177 0.21 -0.5
264,511 + BACOVA_03177 0.24 -0.2
264,512 - BACOVA_03177 0.24 -0.3
264,543 + BACOVA_03177 0.27 -1.2
264,543 + BACOVA_03177 0.27 +0.1
264,545 + BACOVA_03177 0.27 +0.0
264,546 - BACOVA_03177 0.27 -1.6
264,546 - BACOVA_03177 0.27 +1.3
264,552 + BACOVA_03177 0.28 -0.1
264,552 + BACOVA_03177 0.28 +0.3
264,554 + BACOVA_03177 0.28 +0.5
264,554 + BACOVA_03177 0.28 +0.9
264,556 + BACOVA_03177 0.28 -0.4
264,556 + BACOVA_03177 0.28 -1.1
264,557 - BACOVA_03177 0.28 -0.7
264,557 - BACOVA_03177 0.28 +1.2

Or see this region's nucleotide sequence