Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03133

Experiment: polygalacturonic 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03131 and BACOVA_03132 are separated by 20 nucleotidesBACOVA_03132 and BACOVA_03133 are separated by 44 nucleotidesBACOVA_03133 and BACOVA_03134 are separated by 151 nucleotidesBACOVA_03134 and BACOVA_03135 are separated by 40 nucleotides BACOVA_03131: BACOVA_03131 - mannitol dehydrogenase domain protein, at 224,474 to 225,913 _03131 BACOVA_03132: BACOVA_03132 - hypothetical protein, at 225,934 to 226,068 _03132 BACOVA_03133: BACOVA_03133 - sugar-binding domain protein, at 226,113 to 227,129 _03133 BACOVA_03134: BACOVA_03134 - thioredoxin, at 227,281 to 227,595 _03134 BACOVA_03135: BACOVA_03135 - hypothetical protein, at 227,636 to 227,971 _03135 Position (kb) 226 227 228Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 225.150 kb on + strand, within BACOVA_03131at 225.175 kb on - strand, within BACOVA_03131at 225.175 kb on - strand, within BACOVA_03131at 225.176 kb on + strand, within BACOVA_03131at 225.250 kb on + strand, within BACOVA_03131at 225.250 kb on + strand, within BACOVA_03131at 225.250 kb on + strand, within BACOVA_03131at 225.251 kb on - strand, within BACOVA_03131at 225.251 kb on - strand, within BACOVA_03131at 225.251 kb on - strand, within BACOVA_03131at 225.257 kb on + strand, within BACOVA_03131at 225.262 kb on + strand, within BACOVA_03131at 225.263 kb on - strand, within BACOVA_03131at 225.284 kb on + strand, within BACOVA_03131at 225.285 kb on - strand, within BACOVA_03131at 225.356 kb on - strand, within BACOVA_03131at 225.362 kb on - strand, within BACOVA_03131at 225.368 kb on + strand, within BACOVA_03131at 225.369 kb on - strand, within BACOVA_03131at 225.384 kb on - strand, within BACOVA_03131at 225.394 kb on + strand, within BACOVA_03131at 225.395 kb on - strand, within BACOVA_03131at 225.395 kb on - strand, within BACOVA_03131at 225.395 kb on - strand, within BACOVA_03131at 225.476 kb on + strand, within BACOVA_03131at 225.476 kb on + strand, within BACOVA_03131at 225.476 kb on + strand, within BACOVA_03131at 225.476 kb on + strand, within BACOVA_03131at 225.483 kb on + strand, within BACOVA_03131at 225.531 kb on - strand, within BACOVA_03131at 225.533 kb on - strand, within BACOVA_03131at 225.535 kb on + strand, within BACOVA_03131at 225.535 kb on + strand, within BACOVA_03131at 225.535 kb on + strand, within BACOVA_03131at 225.535 kb on + strand, within BACOVA_03131at 225.536 kb on - strand, within BACOVA_03131at 225.536 kb on - strand, within BACOVA_03131at 225.536 kb on - strand, within BACOVA_03131at 225.557 kb on + strand, within BACOVA_03131at 225.557 kb on + strand, within BACOVA_03131at 225.557 kb on + strand, within BACOVA_03131at 225.558 kb on - strand, within BACOVA_03131at 225.562 kb on + strand, within BACOVA_03131at 225.562 kb on + strand, within BACOVA_03131at 225.568 kb on + strand, within BACOVA_03131at 225.568 kb on + strand, within BACOVA_03131at 225.599 kb on - strand, within BACOVA_03131at 225.647 kb on + strand, within BACOVA_03131at 225.690 kb on - strand, within BACOVA_03131at 225.695 kb on - strand, within BACOVA_03131at 225.695 kb on - strand, within BACOVA_03131at 225.695 kb on - strand, within BACOVA_03131at 225.716 kb on + strand, within BACOVA_03131at 225.717 kb on - strand, within BACOVA_03131at 225.719 kb on + strand, within BACOVA_03131at 225.719 kb on + strand, within BACOVA_03131at 225.755 kb on - strand, within BACOVA_03131at 225.755 kb on - strand, within BACOVA_03131at 225.767 kb on - strand, within BACOVA_03131at 225.785 kb on - strandat 225.794 kb on + strandat 225.800 kb on + strandat 225.850 kb on + strandat 225.854 kb on + strandat 225.854 kb on + strandat 225.854 kb on + strandat 225.854 kb on + strandat 225.854 kb on + strandat 225.854 kb on + strandat 225.855 kb on - strandat 225.855 kb on - strandat 225.872 kb on - strandat 225.891 kb on + strandat 225.892 kb on - strandat 225.940 kb on + strandat 225.940 kb on + strandat 225.960 kb on + strand, within BACOVA_03132at 226.002 kb on + strand, within BACOVA_03132at 226.002 kb on + strand, within BACOVA_03132at 226.003 kb on - strand, within BACOVA_03132at 226.007 kb on - strand, within BACOVA_03132at 226.056 kb on + strandat 226.072 kb on - strandat 226.079 kb on + strandat 226.112 kb on + strandat 226.125 kb on - strandat 226.130 kb on + strandat 226.130 kb on + strandat 226.139 kb on - strandat 226.171 kb on + strandat 226.172 kb on - strandat 226.186 kb on + strandat 226.187 kb on - strandat 226.251 kb on + strand, within BACOVA_03133at 226.252 kb on - strand, within BACOVA_03133at 226.253 kb on + strand, within BACOVA_03133at 226.254 kb on - strand, within BACOVA_03133at 226.271 kb on + strand, within BACOVA_03133at 226.292 kb on + strand, within BACOVA_03133at 226.293 kb on - strand, within BACOVA_03133at 226.299 kb on - strand, within BACOVA_03133at 226.360 kb on + strand, within BACOVA_03133at 226.360 kb on + strand, within BACOVA_03133at 226.361 kb on - strand, within BACOVA_03133at 226.394 kb on + strand, within BACOVA_03133at 226.397 kb on + strand, within BACOVA_03133at 226.397 kb on + strand, within BACOVA_03133at 226.461 kb on - strand, within BACOVA_03133at 226.465 kb on - strand, within BACOVA_03133at 226.466 kb on - strand, within BACOVA_03133at 226.494 kb on + strand, within BACOVA_03133at 226.496 kb on + strand, within BACOVA_03133at 226.497 kb on - strand, within BACOVA_03133at 226.516 kb on - strand, within BACOVA_03133at 226.516 kb on - strand, within BACOVA_03133at 226.516 kb on - strand, within BACOVA_03133at 226.516 kb on - strand, within BACOVA_03133at 226.517 kb on + strand, within BACOVA_03133at 226.517 kb on + strand, within BACOVA_03133at 226.518 kb on - strand, within BACOVA_03133at 226.518 kb on - strand, within BACOVA_03133at 226.519 kb on + strand, within BACOVA_03133at 226.519 kb on + strand, within BACOVA_03133at 226.519 kb on + strand, within BACOVA_03133at 226.519 kb on + strand, within BACOVA_03133at 226.520 kb on - strand, within BACOVA_03133at 226.597 kb on + strand, within BACOVA_03133at 226.598 kb on - strand, within BACOVA_03133at 226.598 kb on - strand, within BACOVA_03133at 226.605 kb on + strand, within BACOVA_03133at 226.606 kb on - strand, within BACOVA_03133at 226.608 kb on - strand, within BACOVA_03133at 226.610 kb on - strand, within BACOVA_03133at 226.650 kb on + strand, within BACOVA_03133at 226.653 kb on - strand, within BACOVA_03133at 226.658 kb on + strand, within BACOVA_03133at 226.669 kb on + strand, within BACOVA_03133at 226.689 kb on + strand, within BACOVA_03133at 226.689 kb on + strand, within BACOVA_03133at 226.689 kb on + strand, within BACOVA_03133at 226.689 kb on + strand, within BACOVA_03133at 226.716 kb on + strand, within BACOVA_03133at 226.716 kb on + strand, within BACOVA_03133at 226.718 kb on + strand, within BACOVA_03133at 226.719 kb on - strand, within BACOVA_03133at 226.719 kb on - strand, within BACOVA_03133at 226.811 kb on + strand, within BACOVA_03133at 226.887 kb on - strand, within BACOVA_03133at 226.887 kb on - strand, within BACOVA_03133at 226.901 kb on - strand, within BACOVA_03133at 226.901 kb on - strand, within BACOVA_03133at 226.901 kb on - strand, within BACOVA_03133at 226.959 kb on - strand, within BACOVA_03133at 226.959 kb on - strand, within BACOVA_03133at 226.978 kb on + strand, within BACOVA_03133at 226.999 kb on + strand, within BACOVA_03133at 227.093 kb on + strandat 227.094 kb on - strandat 227.180 kb on + strandat 227.181 kb on - strandat 227.181 kb on - strandat 227.181 kb on - strandat 227.183 kb on - strandat 227.183 kb on - strandat 227.190 kb on + strandat 227.191 kb on - strandat 227.191 kb on - strandat 227.195 kb on - strandat 227.201 kb on - strandat 227.239 kb on + strandat 227.255 kb on + strandat 227.269 kb on + strandat 227.269 kb on + strandat 227.392 kb on - strand, within BACOVA_03134at 227.579 kb on + strandat 227.606 kb on + strandat 227.607 kb on - strandat 227.607 kb on - strandat 227.609 kb on + strandat 227.613 kb on + strandat 227.613 kb on + strandat 227.613 kb on + strandat 227.613 kb on + strandat 227.614 kb on - strandat 227.621 kb on - strandat 227.627 kb on + strandat 227.627 kb on + strandat 227.632 kb on + strandat 227.632 kb on + strandat 227.777 kb on + strand, within BACOVA_03135at 227.780 kb on + strand, within BACOVA_03135at 227.780 kb on + strand, within BACOVA_03135at 227.780 kb on + strand, within BACOVA_03135at 227.826 kb on - strand, within BACOVA_03135at 227.942 kb on + strandat 228.006 kb on + strandat 228.007 kb on - strandat 228.026 kb on + strandat 228.026 kb on + strandat 228.028 kb on + strandat 228.029 kb on - strandat 228.066 kb on + strandat 228.067 kb on - strandat 228.073 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic 2.5 mg/mL (C)
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225,150 + BACOVA_03131 0.47 -0.4
225,175 - BACOVA_03131 0.49 -0.5
225,175 - BACOVA_03131 0.49 -0.9
225,176 + BACOVA_03131 0.49 -0.3
225,250 + BACOVA_03131 0.54 -1.4
225,250 + BACOVA_03131 0.54 -0.0
225,250 + BACOVA_03131 0.54 +0.9
225,251 - BACOVA_03131 0.54 -2.0
225,251 - BACOVA_03131 0.54 -1.4
225,251 - BACOVA_03131 0.54 -2.6
225,257 + BACOVA_03131 0.54 +0.2
225,262 + BACOVA_03131 0.55 +0.4
225,263 - BACOVA_03131 0.55 +0.0
225,284 + BACOVA_03131 0.56 -0.8
225,285 - BACOVA_03131 0.56 +0.8
225,356 - BACOVA_03131 0.61 +0.6
225,362 - BACOVA_03131 0.62 -0.1
225,368 + BACOVA_03131 0.62 -0.8
225,369 - BACOVA_03131 0.62 +0.5
225,384 - BACOVA_03131 0.63 -0.3
225,394 + BACOVA_03131 0.64 +0.1
225,395 - BACOVA_03131 0.64 +1.4
225,395 - BACOVA_03131 0.64 +0.5
225,395 - BACOVA_03131 0.64 -0.1
225,476 + BACOVA_03131 0.70 -1.6
225,476 + BACOVA_03131 0.70 +0.1
225,476 + BACOVA_03131 0.70 -0.8
225,476 + BACOVA_03131 0.70 +0.3
225,483 + BACOVA_03131 0.70 -0.5
225,531 - BACOVA_03131 0.73 -0.0
225,533 - BACOVA_03131 0.74 -1.3
225,535 + BACOVA_03131 0.74 -0.6
225,535 + BACOVA_03131 0.74 +0.8
225,535 + BACOVA_03131 0.74 +0.8
225,535 + BACOVA_03131 0.74 -2.0
225,536 - BACOVA_03131 0.74 +0.9
225,536 - BACOVA_03131 0.74 +0.3
225,536 - BACOVA_03131 0.74 -0.1
225,557 + BACOVA_03131 0.75 +0.1
225,557 + BACOVA_03131 0.75 +0.9
225,557 + BACOVA_03131 0.75 -0.0
225,558 - BACOVA_03131 0.75 -0.7
225,562 + BACOVA_03131 0.76 -0.1
225,562 + BACOVA_03131 0.76 -0.3
225,568 + BACOVA_03131 0.76 +1.1
225,568 + BACOVA_03131 0.76 +0.0
225,599 - BACOVA_03131 0.78 +0.5
225,647 + BACOVA_03131 0.81 -0.4
225,690 - BACOVA_03131 0.84 -0.4
225,695 - BACOVA_03131 0.85 -0.2
225,695 - BACOVA_03131 0.85 +0.8
225,695 - BACOVA_03131 0.85 -0.7
225,716 + BACOVA_03131 0.86 -0.3
225,717 - BACOVA_03131 0.86 +0.3
225,719 + BACOVA_03131 0.86 +0.9
225,719 + BACOVA_03131 0.86 -0.6
225,755 - BACOVA_03131 0.89 +0.1
225,755 - BACOVA_03131 0.89 +1.4
225,767 - BACOVA_03131 0.90 +0.2
225,785 - +0.3
225,794 + -0.1
225,800 + +0.0
225,850 + +0.3
225,854 + +0.8
225,854 + +1.2
225,854 + +0.4
225,854 + -0.4
225,854 + +1.0
225,854 + +0.6
225,855 - +0.3
225,855 - -0.2
225,872 - +0.7
225,891 + +0.5
225,892 - -0.2
225,940 + -0.7
225,940 + -2.1
225,960 + BACOVA_03132 0.19 +0.9
226,002 + BACOVA_03132 0.50 -0.4
226,002 + BACOVA_03132 0.50 -0.5
226,003 - BACOVA_03132 0.51 +0.2
226,007 - BACOVA_03132 0.54 +0.5
226,056 + -1.9
226,072 - +0.9
226,079 + +0.3
226,112 + -1.9
226,125 - -1.0
226,130 + +0.9
226,130 + +0.2
226,139 - -0.3
226,171 + -0.1
226,172 - -0.0
226,186 + +0.2
226,187 - -0.4
226,251 + BACOVA_03133 0.14 -1.6
226,252 - BACOVA_03133 0.14 +0.3
226,253 + BACOVA_03133 0.14 +0.8
226,254 - BACOVA_03133 0.14 -0.6
226,271 + BACOVA_03133 0.16 +0.4
226,292 + BACOVA_03133 0.18 -0.1
226,293 - BACOVA_03133 0.18 +0.3
226,299 - BACOVA_03133 0.18 +0.6
226,360 + BACOVA_03133 0.24 +0.1
226,360 + BACOVA_03133 0.24 -0.4
226,361 - BACOVA_03133 0.24 +0.6
226,394 + BACOVA_03133 0.28 -0.2
226,397 + BACOVA_03133 0.28 +0.3
226,397 + BACOVA_03133 0.28 +0.2
226,461 - BACOVA_03133 0.34 +1.4
226,465 - BACOVA_03133 0.35 +0.5
226,466 - BACOVA_03133 0.35 -0.1
226,494 + BACOVA_03133 0.37 +0.3
226,496 + BACOVA_03133 0.38 -0.0
226,497 - BACOVA_03133 0.38 -1.1
226,516 - BACOVA_03133 0.40 +0.3
226,516 - BACOVA_03133 0.40 -0.9
226,516 - BACOVA_03133 0.40 +0.3
226,516 - BACOVA_03133 0.40 +1.0
226,517 + BACOVA_03133 0.40 -0.3
226,517 + BACOVA_03133 0.40 +0.5
226,518 - BACOVA_03133 0.40 -0.3
226,518 - BACOVA_03133 0.40 +0.6
226,519 + BACOVA_03133 0.40 -0.4
226,519 + BACOVA_03133 0.40 -1.3
226,519 + BACOVA_03133 0.40 +0.4
226,519 + BACOVA_03133 0.40 +0.3
226,520 - BACOVA_03133 0.40 -0.8
226,597 + BACOVA_03133 0.48 -3.4
226,598 - BACOVA_03133 0.48 +0.0
226,598 - BACOVA_03133 0.48 +0.8
226,605 + BACOVA_03133 0.48 -2.0
226,606 - BACOVA_03133 0.48 -0.6
226,608 - BACOVA_03133 0.49 +0.3
226,610 - BACOVA_03133 0.49 -0.8
226,650 + BACOVA_03133 0.53 -1.7
226,653 - BACOVA_03133 0.53 -0.6
226,658 + BACOVA_03133 0.54 +1.0
226,669 + BACOVA_03133 0.55 -0.9
226,689 + BACOVA_03133 0.57 -0.9
226,689 + BACOVA_03133 0.57 -0.8
226,689 + BACOVA_03133 0.57 -0.7
226,689 + BACOVA_03133 0.57 -0.7
226,716 + BACOVA_03133 0.59 -1.1
226,716 + BACOVA_03133 0.59 +0.8
226,718 + BACOVA_03133 0.59 -0.1
226,719 - BACOVA_03133 0.60 -0.7
226,719 - BACOVA_03133 0.60 -0.3
226,811 + BACOVA_03133 0.69 +0.0
226,887 - BACOVA_03133 0.76 +0.1
226,887 - BACOVA_03133 0.76 -0.6
226,901 - BACOVA_03133 0.77 +0.8
226,901 - BACOVA_03133 0.77 -0.7
226,901 - BACOVA_03133 0.77 -2.1
226,959 - BACOVA_03133 0.83 -0.1
226,959 - BACOVA_03133 0.83 +0.7
226,978 + BACOVA_03133 0.85 +0.9
226,999 + BACOVA_03133 0.87 -0.2
227,093 + +0.2
227,094 - +0.3
227,180 + +1.2
227,181 - +0.2
227,181 - -0.0
227,181 - -0.4
227,183 - -0.5
227,183 - +0.0
227,190 + +0.2
227,191 - -1.2
227,191 - +1.4
227,195 - +0.3
227,201 - -0.3
227,239 + +0.4
227,255 + +0.6
227,269 + -0.4
227,269 + -0.9
227,392 - BACOVA_03134 0.35 +0.3
227,579 + -0.3
227,606 + -0.7
227,607 - +0.7
227,607 - +0.8
227,609 + +0.2
227,613 + -0.6
227,613 + +0.3
227,613 + -1.6
227,613 + -0.7
227,614 - -0.8
227,621 - +1.2
227,627 + +0.0
227,627 + +0.2
227,632 + +2.0
227,632 + -0.4
227,777 + BACOVA_03135 0.42 -0.3
227,780 + BACOVA_03135 0.43 -0.4
227,780 + BACOVA_03135 0.43 +0.8
227,780 + BACOVA_03135 0.43 +0.8
227,826 - BACOVA_03135 0.57 -2.4
227,942 + +1.4
228,006 + -0.8
228,007 - -0.3
228,026 + +0.9
228,026 + -1.1
228,028 + -1.0
228,029 - +0.1
228,066 + +0.8
228,067 - +1.4
228,073 - +0.5

Or see this region's nucleotide sequence