Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03084

Experiment: polygalacturonic 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03083 and BACOVA_03084 are separated by 102 nucleotidesBACOVA_03084 and BACOVA_03085 are separated by 92 nucleotides BACOVA_03083: BACOVA_03083 - hypothetical protein, at 156,558 to 158,018 _03083 BACOVA_03084: BACOVA_03084 - GTP-binding protein HflX, at 158,121 to 159,380 _03084 BACOVA_03085: BACOVA_03085 - hypothetical protein, at 159,473 to 161,464 _03085 Position (kb) 158 159 160Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 157.143 kb on + strand, within BACOVA_03083at 157.144 kb on - strand, within BACOVA_03083at 157.147 kb on - strand, within BACOVA_03083at 157.157 kb on + strand, within BACOVA_03083at 157.157 kb on + strand, within BACOVA_03083at 157.158 kb on - strand, within BACOVA_03083at 157.211 kb on + strand, within BACOVA_03083at 157.216 kb on + strand, within BACOVA_03083at 157.217 kb on - strand, within BACOVA_03083at 157.217 kb on - strand, within BACOVA_03083at 157.220 kb on + strand, within BACOVA_03083at 157.221 kb on - strand, within BACOVA_03083at 157.244 kb on + strand, within BACOVA_03083at 157.245 kb on - strand, within BACOVA_03083at 157.250 kb on + strand, within BACOVA_03083at 157.309 kb on - strand, within BACOVA_03083at 157.313 kb on + strand, within BACOVA_03083at 157.350 kb on - strand, within BACOVA_03083at 157.375 kb on + strand, within BACOVA_03083at 157.395 kb on + strand, within BACOVA_03083at 157.396 kb on - strand, within BACOVA_03083at 157.397 kb on + strand, within BACOVA_03083at 157.398 kb on - strand, within BACOVA_03083at 157.398 kb on - strand, within BACOVA_03083at 157.468 kb on + strand, within BACOVA_03083at 157.469 kb on - strand, within BACOVA_03083at 157.487 kb on + strand, within BACOVA_03083at 157.537 kb on + strand, within BACOVA_03083at 157.537 kb on + strand, within BACOVA_03083at 157.538 kb on - strand, within BACOVA_03083at 157.538 kb on - strand, within BACOVA_03083at 157.546 kb on - strand, within BACOVA_03083at 157.579 kb on - strand, within BACOVA_03083at 157.617 kb on + strand, within BACOVA_03083at 157.618 kb on - strand, within BACOVA_03083at 157.668 kb on + strand, within BACOVA_03083at 157.727 kb on + strand, within BACOVA_03083at 157.727 kb on + strand, within BACOVA_03083at 157.731 kb on + strand, within BACOVA_03083at 157.732 kb on - strand, within BACOVA_03083at 157.732 kb on - strand, within BACOVA_03083at 157.732 kb on - strand, within BACOVA_03083at 157.736 kb on + strand, within BACOVA_03083at 157.783 kb on - strand, within BACOVA_03083at 157.794 kb on - strand, within BACOVA_03083at 157.840 kb on + strand, within BACOVA_03083at 157.841 kb on - strand, within BACOVA_03083at 157.936 kb on - strandat 157.937 kb on + strandat 157.938 kb on - strandat 157.962 kb on - strandat 157.962 kb on - strandat 157.965 kb on - strandat 158.002 kb on + strandat 158.025 kb on + strandat 158.054 kb on + strandat 158.055 kb on - strandat 158.055 kb on - strandat 158.102 kb on + strandat 158.102 kb on + strandat 158.104 kb on + strandat 158.106 kb on + strandat 158.106 kb on + strandat 158.170 kb on + strandat 158.201 kb on + strandat 158.214 kb on + strandat 158.307 kb on + strand, within BACOVA_03084at 158.377 kb on + strand, within BACOVA_03084at 158.423 kb on + strand, within BACOVA_03084at 158.482 kb on + strand, within BACOVA_03084at 158.540 kb on + strand, within BACOVA_03084at 158.540 kb on + strand, within BACOVA_03084at 158.544 kb on + strand, within BACOVA_03084at 158.544 kb on + strand, within BACOVA_03084at 158.544 kb on + strand, within BACOVA_03084at 158.546 kb on + strand, within BACOVA_03084at 158.546 kb on + strand, within BACOVA_03084at 158.767 kb on + strand, within BACOVA_03084at 158.787 kb on + strand, within BACOVA_03084at 158.789 kb on + strand, within BACOVA_03084at 158.864 kb on + strand, within BACOVA_03084at 158.924 kb on + strand, within BACOVA_03084at 158.929 kb on + strand, within BACOVA_03084at 158.947 kb on + strand, within BACOVA_03084at 159.104 kb on + strand, within BACOVA_03084at 159.109 kb on + strand, within BACOVA_03084at 159.109 kb on + strand, within BACOVA_03084at 159.109 kb on + strand, within BACOVA_03084at 159.109 kb on + strand, within BACOVA_03084at 159.190 kb on + strand, within BACOVA_03084at 159.330 kb on + strandat 159.385 kb on + strandat 159.390 kb on + strandat 159.420 kb on + strandat 159.458 kb on + strandat 159.458 kb on + strandat 159.458 kb on + strandat 159.466 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic 2.5 mg/mL (C)
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157,143 + BACOVA_03083 0.40 -1.2
157,144 - BACOVA_03083 0.40 -1.1
157,147 - BACOVA_03083 0.40 +1.7
157,157 + BACOVA_03083 0.41 +1.9
157,157 + BACOVA_03083 0.41 +2.2
157,158 - BACOVA_03083 0.41 +0.3
157,211 + BACOVA_03083 0.45 +0.4
157,216 + BACOVA_03083 0.45 +0.0
157,217 - BACOVA_03083 0.45 -0.9
157,217 - BACOVA_03083 0.45 +0.0
157,220 + BACOVA_03083 0.45 -0.0
157,221 - BACOVA_03083 0.45 +2.2
157,244 + BACOVA_03083 0.47 -0.9
157,245 - BACOVA_03083 0.47 +0.0
157,250 + BACOVA_03083 0.47 +0.1
157,309 - BACOVA_03083 0.51 +1.3
157,313 + BACOVA_03083 0.52 +0.5
157,350 - BACOVA_03083 0.54 +0.9
157,375 + BACOVA_03083 0.56 +0.2
157,395 + BACOVA_03083 0.57 +1.2
157,396 - BACOVA_03083 0.57 -1.3
157,397 + BACOVA_03083 0.57 -1.0
157,398 - BACOVA_03083 0.57 +0.2
157,398 - BACOVA_03083 0.57 +1.2
157,468 + BACOVA_03083 0.62 +0.2
157,469 - BACOVA_03083 0.62 -0.6
157,487 + BACOVA_03083 0.64 +0.5
157,537 + BACOVA_03083 0.67 -0.7
157,537 + BACOVA_03083 0.67 +0.1
157,538 - BACOVA_03083 0.67 -1.3
157,538 - BACOVA_03083 0.67 +0.8
157,546 - BACOVA_03083 0.68 -1.7
157,579 - BACOVA_03083 0.70 -1.4
157,617 + BACOVA_03083 0.72 +1.0
157,618 - BACOVA_03083 0.73 +0.2
157,668 + BACOVA_03083 0.76 -0.1
157,727 + BACOVA_03083 0.80 -0.0
157,727 + BACOVA_03083 0.80 +0.7
157,731 + BACOVA_03083 0.80 +0.7
157,732 - BACOVA_03083 0.80 -0.6
157,732 - BACOVA_03083 0.80 +0.3
157,732 - BACOVA_03083 0.80 +1.8
157,736 + BACOVA_03083 0.81 +1.2
157,783 - BACOVA_03083 0.84 +0.8
157,794 - BACOVA_03083 0.85 +0.6
157,840 + BACOVA_03083 0.88 -1.7
157,841 - BACOVA_03083 0.88 -0.9
157,936 - +0.8
157,937 + -0.5
157,938 - -0.3
157,962 - +1.5
157,962 - -0.7
157,965 - +0.6
158,002 + +0.0
158,025 + -0.7
158,054 + +0.1
158,055 - +0.1
158,055 - +1.2
158,102 + -0.1
158,102 + -0.3
158,104 + -0.1
158,106 + -1.3
158,106 + -0.2
158,170 + -0.4
158,201 + -0.3
158,214 + -0.0
158,307 + BACOVA_03084 0.15 -1.9
158,377 + BACOVA_03084 0.20 -0.2
158,423 + BACOVA_03084 0.24 -0.5
158,482 + BACOVA_03084 0.29 +0.0
158,540 + BACOVA_03084 0.33 -0.1
158,540 + BACOVA_03084 0.33 +0.1
158,544 + BACOVA_03084 0.34 -0.9
158,544 + BACOVA_03084 0.34 -1.0
158,544 + BACOVA_03084 0.34 -0.3
158,546 + BACOVA_03084 0.34 -0.2
158,546 + BACOVA_03084 0.34 -0.4
158,767 + BACOVA_03084 0.51 +0.3
158,787 + BACOVA_03084 0.53 -0.9
158,789 + BACOVA_03084 0.53 +0.6
158,864 + BACOVA_03084 0.59 +0.9
158,924 + BACOVA_03084 0.64 -2.8
158,929 + BACOVA_03084 0.64 -1.7
158,947 + BACOVA_03084 0.66 -0.2
159,104 + BACOVA_03084 0.78 +0.2
159,109 + BACOVA_03084 0.78 -0.1
159,109 + BACOVA_03084 0.78 +0.1
159,109 + BACOVA_03084 0.78 +0.1
159,109 + BACOVA_03084 0.78 +0.5
159,190 + BACOVA_03084 0.85 +0.3
159,330 + +0.7
159,385 + -1.0
159,390 + -0.1
159,420 + -0.0
159,458 + -0.3
159,458 + +0.8
159,458 + -0.1
159,466 + +0.4

Or see this region's nucleotide sequence