Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02788

Experiment: polygalacturonic 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_02787 and BACOVA_02788 are separated by 205 nucleotidesBACOVA_02788 and BACOVA_02789 are separated by 170 nucleotides BACOVA_02787: BACOVA_02787 - TonB-linked outer membrane protein, SusC/RagA family, at 238,704 to 241,709 _02787 BACOVA_02788: BACOVA_02788 - hypothetical protein, at 241,915 to 243,564 _02788 BACOVA_02789: BACOVA_02789 - hypothetical protein, at 243,735 to 244,868 _02789 Position (kb) 241 242 243 244Strain fitness (log2 ratio) -3 -2 -1 0 1at 240.942 kb on - strand, within BACOVA_02787at 240.957 kb on - strand, within BACOVA_02787at 241.049 kb on - strand, within BACOVA_02787at 241.052 kb on + strand, within BACOVA_02787at 241.053 kb on - strand, within BACOVA_02787at 241.077 kb on + strand, within BACOVA_02787at 241.103 kb on + strand, within BACOVA_02787at 241.160 kb on + strand, within BACOVA_02787at 241.231 kb on - strand, within BACOVA_02787at 241.271 kb on + strand, within BACOVA_02787at 241.274 kb on + strand, within BACOVA_02787at 241.274 kb on + strand, within BACOVA_02787at 241.275 kb on - strand, within BACOVA_02787at 241.317 kb on + strand, within BACOVA_02787at 241.359 kb on + strand, within BACOVA_02787at 241.366 kb on - strand, within BACOVA_02787at 241.368 kb on + strand, within BACOVA_02787at 241.388 kb on + strand, within BACOVA_02787at 241.404 kb on + strand, within BACOVA_02787at 241.451 kb on - strandat 241.466 kb on + strandat 241.512 kb on + strandat 241.538 kb on + strandat 241.590 kb on + strandat 241.590 kb on + strandat 241.590 kb on + strandat 241.591 kb on - strandat 241.629 kb on - strandat 241.629 kb on - strandat 241.656 kb on + strandat 241.659 kb on + strandat 241.692 kb on - strandat 241.705 kb on + strandat 241.706 kb on - strandat 241.725 kb on - strandat 241.727 kb on + strandat 241.727 kb on + strandat 241.728 kb on - strandat 241.728 kb on - strandat 241.728 kb on - strandat 241.808 kb on - strandat 241.832 kb on + strandat 241.916 kb on + strandat 241.934 kb on - strandat 242.005 kb on - strandat 242.006 kb on + strandat 242.006 kb on + strandat 242.013 kb on + strandat 242.014 kb on - strandat 242.014 kb on - strandat 242.049 kb on + strandat 242.050 kb on - strandat 242.083 kb on + strand, within BACOVA_02788at 242.084 kb on - strand, within BACOVA_02788at 242.085 kb on + strand, within BACOVA_02788at 242.086 kb on - strand, within BACOVA_02788at 242.254 kb on - strand, within BACOVA_02788at 242.254 kb on - strand, within BACOVA_02788at 242.254 kb on - strand, within BACOVA_02788at 242.255 kb on + strand, within BACOVA_02788at 242.255 kb on + strand, within BACOVA_02788at 242.308 kb on + strand, within BACOVA_02788at 242.309 kb on - strand, within BACOVA_02788at 242.309 kb on - strand, within BACOVA_02788at 242.309 kb on - strand, within BACOVA_02788at 242.327 kb on + strand, within BACOVA_02788at 242.328 kb on - strand, within BACOVA_02788at 242.346 kb on + strand, within BACOVA_02788at 242.347 kb on - strand, within BACOVA_02788at 242.349 kb on - strand, within BACOVA_02788at 242.361 kb on - strand, within BACOVA_02788at 242.373 kb on + strand, within BACOVA_02788at 242.374 kb on - strand, within BACOVA_02788at 242.394 kb on + strand, within BACOVA_02788at 242.460 kb on + strand, within BACOVA_02788at 242.464 kb on - strand, within BACOVA_02788at 242.542 kb on + strand, within BACOVA_02788at 242.612 kb on + strand, within BACOVA_02788at 242.613 kb on - strand, within BACOVA_02788at 242.628 kb on + strand, within BACOVA_02788at 242.655 kb on + strand, within BACOVA_02788at 242.656 kb on - strand, within BACOVA_02788at 242.689 kb on + strand, within BACOVA_02788at 242.690 kb on - strand, within BACOVA_02788at 242.711 kb on + strand, within BACOVA_02788at 242.712 kb on - strand, within BACOVA_02788at 242.712 kb on - strand, within BACOVA_02788at 242.724 kb on + strand, within BACOVA_02788at 242.772 kb on - strand, within BACOVA_02788at 242.874 kb on - strand, within BACOVA_02788at 242.877 kb on + strand, within BACOVA_02788at 242.878 kb on - strand, within BACOVA_02788at 242.878 kb on - strand, within BACOVA_02788at 242.878 kb on - strand, within BACOVA_02788at 242.919 kb on - strand, within BACOVA_02788at 242.919 kb on - strand, within BACOVA_02788at 242.922 kb on - strand, within BACOVA_02788at 242.952 kb on - strand, within BACOVA_02788at 242.952 kb on - strand, within BACOVA_02788at 242.963 kb on - strand, within BACOVA_02788at 242.967 kb on + strand, within BACOVA_02788at 242.968 kb on - strand, within BACOVA_02788at 242.974 kb on - strand, within BACOVA_02788at 242.974 kb on - strand, within BACOVA_02788at 243.057 kb on - strand, within BACOVA_02788at 243.059 kb on + strand, within BACOVA_02788at 243.060 kb on - strand, within BACOVA_02788at 243.090 kb on - strand, within BACOVA_02788at 243.107 kb on + strand, within BACOVA_02788at 243.128 kb on + strand, within BACOVA_02788at 243.128 kb on + strand, within BACOVA_02788at 243.129 kb on - strand, within BACOVA_02788at 243.132 kb on - strand, within BACOVA_02788at 243.132 kb on - strand, within BACOVA_02788at 243.132 kb on - strand, within BACOVA_02788at 243.132 kb on - strand, within BACOVA_02788at 243.132 kb on - strand, within BACOVA_02788at 243.134 kb on + strand, within BACOVA_02788at 243.135 kb on - strand, within BACOVA_02788at 243.140 kb on + strand, within BACOVA_02788at 243.181 kb on + strand, within BACOVA_02788at 243.181 kb on + strand, within BACOVA_02788at 243.181 kb on + strand, within BACOVA_02788at 243.181 kb on + strand, within BACOVA_02788at 243.182 kb on - strand, within BACOVA_02788at 243.182 kb on - strand, within BACOVA_02788at 243.200 kb on + strand, within BACOVA_02788at 243.200 kb on + strand, within BACOVA_02788at 243.254 kb on + strand, within BACOVA_02788at 243.265 kb on - strand, within BACOVA_02788at 243.302 kb on + strand, within BACOVA_02788at 243.326 kb on + strand, within BACOVA_02788at 243.366 kb on - strand, within BACOVA_02788at 243.463 kb on - strandat 243.463 kb on - strandat 243.493 kb on - strandat 243.498 kb on + strandat 243.572 kb on + strandat 243.581 kb on + strandat 243.581 kb on + strandat 243.582 kb on - strandat 243.582 kb on - strandat 243.582 kb on - strandat 243.594 kb on - strandat 243.660 kb on - strandat 243.673 kb on - strandat 243.688 kb on + strandat 243.749 kb on + strandat 243.758 kb on + strandat 243.759 kb on - strandat 243.771 kb on + strandat 243.775 kb on + strandat 243.776 kb on - strandat 243.786 kb on + strandat 243.787 kb on - strandat 243.823 kb on + strandat 243.823 kb on + strandat 243.930 kb on + strand, within BACOVA_02789at 243.931 kb on - strand, within BACOVA_02789at 243.934 kb on - strand, within BACOVA_02789at 243.936 kb on - strand, within BACOVA_02789at 243.955 kb on - strand, within BACOVA_02789at 244.083 kb on - strand, within BACOVA_02789at 244.140 kb on - strand, within BACOVA_02789at 244.199 kb on + strand, within BACOVA_02789at 244.199 kb on + strand, within BACOVA_02789at 244.200 kb on - strand, within BACOVA_02789at 244.228 kb on + strand, within BACOVA_02789at 244.237 kb on - strand, within BACOVA_02789at 244.252 kb on + strand, within BACOVA_02789at 244.253 kb on - strand, within BACOVA_02789at 244.253 kb on - strand, within BACOVA_02789at 244.271 kb on + strand, within BACOVA_02789at 244.272 kb on - strand, within BACOVA_02789at 244.328 kb on + strand, within BACOVA_02789at 244.337 kb on + strand, within BACOVA_02789at 244.413 kb on + strand, within BACOVA_02789at 244.414 kb on - strand, within BACOVA_02789at 244.449 kb on - strand, within BACOVA_02789at 244.484 kb on - strand, within BACOVA_02789at 244.512 kb on + strand, within BACOVA_02789at 244.513 kb on - strand, within BACOVA_02789at 244.516 kb on + strand, within BACOVA_02789at 244.516 kb on + strand, within BACOVA_02789at 244.516 kb on + strand, within BACOVA_02789at 244.517 kb on - strand, within BACOVA_02789at 244.529 kb on + strand, within BACOVA_02789at 244.530 kb on - strand, within BACOVA_02789at 244.538 kb on - strand, within BACOVA_02789at 244.539 kb on + strand, within BACOVA_02789at 244.540 kb on - strand, within BACOVA_02789at 244.542 kb on - strand, within BACOVA_02789

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic 2.5 mg/mL (C)
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240,942 - BACOVA_02787 0.74 -0.1
240,957 - BACOVA_02787 0.75 +0.2
241,049 - BACOVA_02787 0.78 -0.4
241,052 + BACOVA_02787 0.78 +0.3
241,053 - BACOVA_02787 0.78 -1.9
241,077 + BACOVA_02787 0.79 +0.8
241,103 + BACOVA_02787 0.80 +1.4
241,160 + BACOVA_02787 0.82 +0.4
241,231 - BACOVA_02787 0.84 -0.2
241,271 + BACOVA_02787 0.85 +1.0
241,274 + BACOVA_02787 0.85 +0.9
241,274 + BACOVA_02787 0.85 +1.1
241,275 - BACOVA_02787 0.86 -0.8
241,317 + BACOVA_02787 0.87 -0.2
241,359 + BACOVA_02787 0.88 +0.3
241,366 - BACOVA_02787 0.89 -0.3
241,368 + BACOVA_02787 0.89 -0.1
241,388 + BACOVA_02787 0.89 -1.1
241,404 + BACOVA_02787 0.90 +0.6
241,451 - +0.5
241,466 + -0.2
241,512 + -0.1
241,538 + -0.0
241,590 + -0.8
241,590 + -1.0
241,590 + -0.4
241,591 - -0.3
241,629 - -0.8
241,629 - -0.5
241,656 + +1.0
241,659 + +0.5
241,692 - +0.7
241,705 + -0.5
241,706 - +0.9
241,725 - -0.7
241,727 + -0.2
241,727 + +1.4
241,728 - +1.5
241,728 - -1.0
241,728 - +0.5
241,808 - -0.4
241,832 + +0.3
241,916 + +0.2
241,934 - -0.7
242,005 - -1.3
242,006 + +0.6
242,006 + -0.3
242,013 + -0.7
242,014 - +0.1
242,014 - -0.0
242,049 + -0.6
242,050 - -0.3
242,083 + BACOVA_02788 0.10 -0.3
242,084 - BACOVA_02788 0.10 -0.6
242,085 + BACOVA_02788 0.10 -0.5
242,086 - BACOVA_02788 0.10 -1.1
242,254 - BACOVA_02788 0.21 -0.9
242,254 - BACOVA_02788 0.21 -0.3
242,254 - BACOVA_02788 0.21 +0.4
242,255 + BACOVA_02788 0.21 -0.3
242,255 + BACOVA_02788 0.21 -0.6
242,308 + BACOVA_02788 0.24 -0.2
242,309 - BACOVA_02788 0.24 +0.5
242,309 - BACOVA_02788 0.24 +1.6
242,309 - BACOVA_02788 0.24 -1.7
242,327 + BACOVA_02788 0.25 +0.2
242,328 - BACOVA_02788 0.25 -0.1
242,346 + BACOVA_02788 0.26 +0.3
242,347 - BACOVA_02788 0.26 -0.4
242,349 - BACOVA_02788 0.26 -1.3
242,361 - BACOVA_02788 0.27 -0.9
242,373 + BACOVA_02788 0.28 +1.2
242,374 - BACOVA_02788 0.28 +0.6
242,394 + BACOVA_02788 0.29 +0.5
242,460 + BACOVA_02788 0.33 -0.7
242,464 - BACOVA_02788 0.33 -0.9
242,542 + BACOVA_02788 0.38 +0.3
242,612 + BACOVA_02788 0.42 -0.2
242,613 - BACOVA_02788 0.42 +0.8
242,628 + BACOVA_02788 0.43 -0.9
242,655 + BACOVA_02788 0.45 -2.0
242,656 - BACOVA_02788 0.45 -0.8
242,689 + BACOVA_02788 0.47 -1.5
242,690 - BACOVA_02788 0.47 -0.5
242,711 + BACOVA_02788 0.48 -1.1
242,712 - BACOVA_02788 0.48 -0.1
242,712 - BACOVA_02788 0.48 -0.7
242,724 + BACOVA_02788 0.49 -1.3
242,772 - BACOVA_02788 0.52 +1.7
242,874 - BACOVA_02788 0.58 -0.1
242,877 + BACOVA_02788 0.58 -0.4
242,878 - BACOVA_02788 0.58 -0.4
242,878 - BACOVA_02788 0.58 -0.6
242,878 - BACOVA_02788 0.58 -0.3
242,919 - BACOVA_02788 0.61 +0.8
242,919 - BACOVA_02788 0.61 -0.4
242,922 - BACOVA_02788 0.61 +0.6
242,952 - BACOVA_02788 0.63 +0.8
242,952 - BACOVA_02788 0.63 -0.1
242,963 - BACOVA_02788 0.64 -0.5
242,967 + BACOVA_02788 0.64 -1.7
242,968 - BACOVA_02788 0.64 -0.3
242,974 - BACOVA_02788 0.64 -0.8
242,974 - BACOVA_02788 0.64 -0.2
243,057 - BACOVA_02788 0.69 +0.6
243,059 + BACOVA_02788 0.69 +0.9
243,060 - BACOVA_02788 0.69 +0.6
243,090 - BACOVA_02788 0.71 -0.1
243,107 + BACOVA_02788 0.72 -0.4
243,128 + BACOVA_02788 0.74 -3.1
243,128 + BACOVA_02788 0.74 +0.2
243,129 - BACOVA_02788 0.74 +1.2
243,132 - BACOVA_02788 0.74 -0.3
243,132 - BACOVA_02788 0.74 -0.5
243,132 - BACOVA_02788 0.74 -0.3
243,132 - BACOVA_02788 0.74 -0.1
243,132 - BACOVA_02788 0.74 -0.6
243,134 + BACOVA_02788 0.74 -0.5
243,135 - BACOVA_02788 0.74 +0.5
243,140 + BACOVA_02788 0.74 +0.0
243,181 + BACOVA_02788 0.77 -1.1
243,181 + BACOVA_02788 0.77 +1.1
243,181 + BACOVA_02788 0.77 -0.4
243,181 + BACOVA_02788 0.77 -1.0
243,182 - BACOVA_02788 0.77 +0.6
243,182 - BACOVA_02788 0.77 -0.5
243,200 + BACOVA_02788 0.78 +0.1
243,200 + BACOVA_02788 0.78 -0.1
243,254 + BACOVA_02788 0.81 +1.0
243,265 - BACOVA_02788 0.82 +1.0
243,302 + BACOVA_02788 0.84 +0.3
243,326 + BACOVA_02788 0.86 -0.2
243,366 - BACOVA_02788 0.88 +0.1
243,463 - -0.9
243,463 - +0.6
243,493 - +0.3
243,498 + -0.6
243,572 + -2.3
243,581 + -0.4
243,581 + -0.6
243,582 - -0.8
243,582 - +0.1
243,582 - +0.3
243,594 - -0.8
243,660 - -0.8
243,673 - -2.4
243,688 + +0.2
243,749 + +1.2
243,758 + -1.3
243,759 - +0.6
243,771 + -0.0
243,775 + +1.0
243,776 - -2.3
243,786 + -0.4
243,787 - -0.1
243,823 + -0.3
243,823 + -0.9
243,930 + BACOVA_02789 0.17 -0.3
243,931 - BACOVA_02789 0.17 +0.1
243,934 - BACOVA_02789 0.18 -0.5
243,936 - BACOVA_02789 0.18 -0.6
243,955 - BACOVA_02789 0.19 +0.7
244,083 - BACOVA_02789 0.31 +0.8
244,140 - BACOVA_02789 0.36 -0.3
244,199 + BACOVA_02789 0.41 -0.6
244,199 + BACOVA_02789 0.41 +0.9
244,200 - BACOVA_02789 0.41 -1.8
244,228 + BACOVA_02789 0.43 -0.5
244,237 - BACOVA_02789 0.44 +0.0
244,252 + BACOVA_02789 0.46 +0.1
244,253 - BACOVA_02789 0.46 +0.0
244,253 - BACOVA_02789 0.46 +0.1
244,271 + BACOVA_02789 0.47 +0.2
244,272 - BACOVA_02789 0.47 +0.6
244,328 + BACOVA_02789 0.52 -0.4
244,337 + BACOVA_02789 0.53 -0.6
244,413 + BACOVA_02789 0.60 -0.0
244,414 - BACOVA_02789 0.60 -1.9
244,449 - BACOVA_02789 0.63 +0.9
244,484 - BACOVA_02789 0.66 +0.2
244,512 + BACOVA_02789 0.69 +0.7
244,513 - BACOVA_02789 0.69 -0.2
244,516 + BACOVA_02789 0.69 -0.0
244,516 + BACOVA_02789 0.69 +0.3
244,516 + BACOVA_02789 0.69 +0.3
244,517 - BACOVA_02789 0.69 -0.2
244,529 + BACOVA_02789 0.70 -0.3
244,530 - BACOVA_02789 0.70 -1.0
244,538 - BACOVA_02789 0.71 +0.3
244,539 + BACOVA_02789 0.71 -0.8
244,540 - BACOVA_02789 0.71 -1.5
244,542 - BACOVA_02789 0.71 -0.6

Or see this region's nucleotide sequence