Experiment: polygalacturonic 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_02750 and BACOVA_02751 are separated by 15 nucleotides BACOVA_02751 and BACOVA_02752 are separated by 12 nucleotides
BACOVA_02750: BACOVA_02750 - hypothetical protein, at 191,124 to 192,314
_02750
BACOVA_02751: BACOVA_02751 - SusD family protein, at 192,330 to 194,267
_02751
BACOVA_02752: BACOVA_02752 - TonB-linked outer membrane protein, SusC/RagA family, at 194,280 to 197,492
_02752
Position (kb) 192
193
194
195 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 191.426 kb on + strand, within BACOVA_02750 at 191.426 kb on + strand, within BACOVA_02750 at 191.426 kb on + strand, within BACOVA_02750 at 191.429 kb on - strand, within BACOVA_02750 at 191.432 kb on + strand, within BACOVA_02750 at 191.433 kb on - strand, within BACOVA_02750 at 191.434 kb on + strand, within BACOVA_02750 at 191.434 kb on + strand, within BACOVA_02750 at 191.434 kb on + strand, within BACOVA_02750 at 191.435 kb on - strand, within BACOVA_02750 at 191.435 kb on - strand, within BACOVA_02750 at 191.435 kb on - strand, within BACOVA_02750 at 191.471 kb on + strand, within BACOVA_02750 at 191.471 kb on + strand, within BACOVA_02750 at 191.472 kb on - strand, within BACOVA_02750 at 191.500 kb on + strand, within BACOVA_02750 at 191.500 kb on + strand, within BACOVA_02750 at 191.501 kb on - strand, within BACOVA_02750 at 191.530 kb on + strand, within BACOVA_02750 at 191.530 kb on + strand, within BACOVA_02750 at 191.601 kb on - strand, within BACOVA_02750 at 191.696 kb on + strand, within BACOVA_02750 at 191.702 kb on + strand, within BACOVA_02750 at 191.702 kb on + strand, within BACOVA_02750 at 191.707 kb on + strand, within BACOVA_02750 at 191.707 kb on + strand, within BACOVA_02750 at 191.762 kb on + strand, within BACOVA_02750 at 191.768 kb on + strand, within BACOVA_02750 at 191.769 kb on - strand, within BACOVA_02750 at 191.791 kb on + strand, within BACOVA_02750 at 191.795 kb on + strand, within BACOVA_02750 at 191.961 kb on + strand, within BACOVA_02750 at 191.965 kb on - strand, within BACOVA_02750 at 191.986 kb on + strand, within BACOVA_02750 at 191.986 kb on + strand, within BACOVA_02750 at 191.986 kb on + strand, within BACOVA_02750 at 191.986 kb on + strand, within BACOVA_02750 at 191.993 kb on + strand, within BACOVA_02750 at 191.994 kb on - strand, within BACOVA_02750 at 192.045 kb on + strand, within BACOVA_02750 at 192.109 kb on + strand, within BACOVA_02750 at 192.120 kb on - strand, within BACOVA_02750 at 192.180 kb on + strand, within BACOVA_02750 at 192.244 kb on + strand at 192.244 kb on + strand at 192.244 kb on + strand at 192.245 kb on - strand at 192.245 kb on - strand at 192.254 kb on + strand at 192.255 kb on - strand at 192.255 kb on - strand at 192.255 kb on - strand at 192.299 kb on + strand at 192.300 kb on - strand at 192.300 kb on - strand at 192.315 kb on - strand at 192.331 kb on + strand at 192.401 kb on - strand at 192.420 kb on + strand at 192.445 kb on + strand at 192.446 kb on - strand at 192.446 kb on - strand at 192.472 kb on - strand at 192.497 kb on + strand at 192.499 kb on + strand at 192.506 kb on + strand at 192.506 kb on + strand at 192.507 kb on - strand at 192.507 kb on - strand at 192.528 kb on + strand, within BACOVA_02751 at 192.529 kb on - strand, within BACOVA_02751 at 192.529 kb on - strand, within BACOVA_02751 at 192.529 kb on - strand, within BACOVA_02751 at 192.563 kb on - strand, within BACOVA_02751 at 192.596 kb on + strand, within BACOVA_02751 at 192.596 kb on + strand, within BACOVA_02751 at 192.596 kb on + strand, within BACOVA_02751 at 192.597 kb on - strand, within BACOVA_02751 at 192.600 kb on + strand, within BACOVA_02751 at 192.600 kb on + strand, within BACOVA_02751 at 192.601 kb on - strand, within BACOVA_02751 at 192.635 kb on - strand, within BACOVA_02751 at 192.678 kb on - strand, within BACOVA_02751 at 192.694 kb on + strand, within BACOVA_02751 at 192.698 kb on - strand, within BACOVA_02751 at 192.698 kb on - strand, within BACOVA_02751 at 192.700 kb on + strand, within BACOVA_02751 at 192.700 kb on + strand, within BACOVA_02751 at 192.700 kb on + strand, within BACOVA_02751 at 192.702 kb on + strand, within BACOVA_02751 at 192.702 kb on + strand, within BACOVA_02751 at 192.757 kb on + strand, within BACOVA_02751 at 192.758 kb on - strand, within BACOVA_02751 at 192.788 kb on + strand, within BACOVA_02751 at 192.788 kb on + strand, within BACOVA_02751 at 192.789 kb on - strand, within BACOVA_02751 at 192.789 kb on - strand, within BACOVA_02751 at 192.789 kb on - strand, within BACOVA_02751 at 192.791 kb on + strand, within BACOVA_02751 at 192.799 kb on + strand, within BACOVA_02751 at 192.799 kb on + strand, within BACOVA_02751 at 192.800 kb on - strand, within BACOVA_02751 at 192.800 kb on - strand, within BACOVA_02751 at 192.804 kb on - strand, within BACOVA_02751 at 192.971 kb on + strand, within BACOVA_02751 at 192.971 kb on + strand, within BACOVA_02751 at 192.971 kb on + strand, within BACOVA_02751 at 193.046 kb on - strand, within BACOVA_02751 at 193.072 kb on + strand, within BACOVA_02751 at 193.072 kb on + strand, within BACOVA_02751 at 193.073 kb on - strand, within BACOVA_02751 at 193.075 kb on + strand, within BACOVA_02751 at 193.075 kb on + strand, within BACOVA_02751 at 193.101 kb on + strand, within BACOVA_02751 at 193.127 kb on - strand, within BACOVA_02751 at 193.145 kb on + strand, within BACOVA_02751 at 193.150 kb on - strand, within BACOVA_02751 at 193.195 kb on + strand, within BACOVA_02751 at 193.241 kb on + strand, within BACOVA_02751 at 193.255 kb on - strand, within BACOVA_02751 at 193.399 kb on - strand, within BACOVA_02751 at 193.426 kb on - strand, within BACOVA_02751 at 193.432 kb on - strand, within BACOVA_02751 at 193.458 kb on + strand, within BACOVA_02751 at 193.459 kb on - strand, within BACOVA_02751 at 193.459 kb on - strand, within BACOVA_02751 at 193.469 kb on + strand, within BACOVA_02751 at 193.469 kb on + strand, within BACOVA_02751 at 193.470 kb on - strand, within BACOVA_02751 at 193.499 kb on + strand, within BACOVA_02751 at 193.604 kb on + strand, within BACOVA_02751 at 193.605 kb on - strand, within BACOVA_02751 at 193.605 kb on - strand, within BACOVA_02751 at 193.608 kb on - strand, within BACOVA_02751 at 193.682 kb on + strand, within BACOVA_02751 at 193.683 kb on - strand, within BACOVA_02751 at 193.685 kb on - strand, within BACOVA_02751 at 193.685 kb on - strand, within BACOVA_02751 at 193.706 kb on + strand, within BACOVA_02751 at 193.712 kb on + strand, within BACOVA_02751 at 193.713 kb on - strand, within BACOVA_02751 at 193.713 kb on - strand, within BACOVA_02751 at 193.714 kb on + strand, within BACOVA_02751 at 193.715 kb on - strand, within BACOVA_02751 at 193.716 kb on + strand, within BACOVA_02751 at 193.716 kb on + strand, within BACOVA_02751 at 193.717 kb on - strand, within BACOVA_02751 at 193.722 kb on + strand, within BACOVA_02751 at 193.740 kb on - strand, within BACOVA_02751 at 193.743 kb on + strand, within BACOVA_02751 at 193.773 kb on - strand, within BACOVA_02751 at 193.780 kb on + strand, within BACOVA_02751 at 193.780 kb on + strand, within BACOVA_02751 at 193.780 kb on + strand, within BACOVA_02751 at 193.795 kb on + strand, within BACOVA_02751 at 193.804 kb on + strand, within BACOVA_02751 at 193.825 kb on - strand, within BACOVA_02751 at 193.902 kb on - strand, within BACOVA_02751 at 193.902 kb on - strand, within BACOVA_02751 at 193.902 kb on - strand, within BACOVA_02751 at 193.928 kb on + strand, within BACOVA_02751 at 194.011 kb on + strand, within BACOVA_02751 at 194.032 kb on + strand, within BACOVA_02751 at 194.032 kb on + strand, within BACOVA_02751 at 194.033 kb on - strand, within BACOVA_02751 at 194.053 kb on + strand, within BACOVA_02751 at 194.083 kb on + strand at 194.110 kb on + strand at 194.110 kb on + strand at 194.110 kb on + strand at 194.110 kb on + strand at 194.110 kb on + strand at 194.111 kb on - strand at 194.244 kb on + strand at 194.245 kb on - strand at 194.247 kb on + strand at 194.248 kb on - strand at 194.289 kb on + strand at 194.289 kb on + strand at 194.308 kb on + strand at 194.308 kb on + strand at 194.309 kb on - strand at 194.310 kb on + strand at 194.404 kb on + strand at 194.440 kb on + strand at 194.456 kb on + strand at 194.456 kb on + strand at 194.456 kb on + strand at 194.457 kb on - strand at 194.457 kb on - strand at 194.457 kb on - strand at 194.525 kb on + strand at 194.525 kb on + strand at 194.525 kb on + strand at 194.555 kb on + strand at 194.555 kb on + strand at 194.571 kb on + strand at 194.571 kb on + strand at 194.572 kb on - strand at 194.608 kb on + strand, within BACOVA_02752 at 194.608 kb on + strand, within BACOVA_02752 at 194.609 kb on - strand, within BACOVA_02752 at 194.609 kb on - strand, within BACOVA_02752 at 194.682 kb on - strand, within BACOVA_02752 at 194.709 kb on + strand, within BACOVA_02752 at 194.709 kb on + strand, within BACOVA_02752 at 194.742 kb on + strand, within BACOVA_02752 at 194.744 kb on + strand, within BACOVA_02752 at 194.744 kb on + strand, within BACOVA_02752 at 194.746 kb on + strand, within BACOVA_02752 at 194.789 kb on + strand, within BACOVA_02752 at 194.790 kb on - strand, within BACOVA_02752 at 194.790 kb on - strand, within BACOVA_02752 at 194.802 kb on - strand, within BACOVA_02752 at 194.802 kb on - strand, within BACOVA_02752 at 194.852 kb on - strand, within BACOVA_02752 at 194.858 kb on + strand, within BACOVA_02752 at 194.870 kb on + strand, within BACOVA_02752 at 194.872 kb on + strand, within BACOVA_02752 at 194.941 kb on + strand, within BACOVA_02752 at 194.942 kb on - strand, within BACOVA_02752 at 194.990 kb on + strand, within BACOVA_02752 at 195.015 kb on + strand, within BACOVA_02752 at 195.015 kb on + strand, within BACOVA_02752 at 195.016 kb on - strand, within BACOVA_02752 at 195.033 kb on - strand, within BACOVA_02752 at 195.041 kb on + strand, within BACOVA_02752 at 195.041 kb on + strand, within BACOVA_02752 at 195.077 kb on + strand, within BACOVA_02752 at 195.096 kb on + strand, within BACOVA_02752 at 195.099 kb on - strand, within BACOVA_02752 at 195.099 kb on - strand, within BACOVA_02752 at 195.177 kb on - strand, within BACOVA_02752 at 195.220 kb on + strand, within BACOVA_02752 at 195.267 kb on + strand, within BACOVA_02752 at 195.267 kb on + strand, within BACOVA_02752
Per-strain Table
Position Strand Gene LocusTag Fraction polygalacturonic 2.5 mg/mL (C) remove 191,426 + BACOVA_02750 0.25 -0.9 191,426 + BACOVA_02750 0.25 -0.5 191,426 + BACOVA_02750 0.25 -1.3 191,429 - BACOVA_02750 0.26 -0.3 191,432 + BACOVA_02750 0.26 +1.7 191,433 - BACOVA_02750 0.26 -0.8 191,434 + BACOVA_02750 0.26 +0.5 191,434 + BACOVA_02750 0.26 -0.4 191,434 + BACOVA_02750 0.26 -0.4 191,435 - BACOVA_02750 0.26 -1.2 191,435 - BACOVA_02750 0.26 -0.3 191,435 - BACOVA_02750 0.26 -0.8 191,471 + BACOVA_02750 0.29 +0.4 191,471 + BACOVA_02750 0.29 -0.7 191,472 - BACOVA_02750 0.29 +0.9 191,500 + BACOVA_02750 0.32 -0.9 191,500 + BACOVA_02750 0.32 -0.9 191,501 - BACOVA_02750 0.32 +0.8 191,530 + BACOVA_02750 0.34 -0.1 191,530 + BACOVA_02750 0.34 -1.7 191,601 - BACOVA_02750 0.40 -2.1 191,696 + BACOVA_02750 0.48 +0.1 191,702 + BACOVA_02750 0.49 -0.2 191,702 + BACOVA_02750 0.49 +1.6 191,707 + BACOVA_02750 0.49 +0.1 191,707 + BACOVA_02750 0.49 -0.5 191,762 + BACOVA_02750 0.54 +0.4 191,768 + BACOVA_02750 0.54 -0.5 191,769 - BACOVA_02750 0.54 -0.8 191,791 + BACOVA_02750 0.56 +0.2 191,795 + BACOVA_02750 0.56 -0.3 191,961 + BACOVA_02750 0.70 -0.0 191,965 - BACOVA_02750 0.71 +0.2 191,986 + BACOVA_02750 0.72 -1.6 191,986 + BACOVA_02750 0.72 -1.5 191,986 + BACOVA_02750 0.72 -1.0 191,986 + BACOVA_02750 0.72 -0.2 191,993 + BACOVA_02750 0.73 -1.0 191,994 - BACOVA_02750 0.73 -0.8 192,045 + BACOVA_02750 0.77 +0.1 192,109 + BACOVA_02750 0.83 +0.2 192,120 - BACOVA_02750 0.84 -0.2 192,180 + BACOVA_02750 0.89 +1.1 192,244 + +1.1 192,244 + -0.1 192,244 + +0.6 192,245 - +0.7 192,245 - -1.1 192,254 + -0.1 192,255 - -1.6 192,255 - +0.2 192,255 - +0.1 192,299 + -0.7 192,300 - -0.3 192,300 - +1.7 192,315 - -0.7 192,331 + +1.2 192,401 - -0.0 192,420 + -0.7 192,445 + -0.1 192,446 - -0.6 192,446 - +0.2 192,472 - -1.3 192,497 + -0.1 192,499 + +0.5 192,506 + +0.3 192,506 + +0.4 192,507 - -0.5 192,507 - -1.7 192,528 + BACOVA_02751 0.10 -0.3 192,529 - BACOVA_02751 0.10 -0.2 192,529 - BACOVA_02751 0.10 +0.6 192,529 - BACOVA_02751 0.10 +0.4 192,563 - BACOVA_02751 0.12 -1.1 192,596 + BACOVA_02751 0.14 -0.4 192,596 + BACOVA_02751 0.14 +0.2 192,596 + BACOVA_02751 0.14 -2.5 192,597 - BACOVA_02751 0.14 -1.5 192,600 + BACOVA_02751 0.14 -0.1 192,600 + BACOVA_02751 0.14 +0.0 192,601 - BACOVA_02751 0.14 -1.0 192,635 - BACOVA_02751 0.16 -1.0 192,678 - BACOVA_02751 0.18 +1.0 192,694 + BACOVA_02751 0.19 +0.0 192,698 - BACOVA_02751 0.19 +0.5 192,698 - BACOVA_02751 0.19 +0.8 192,700 + BACOVA_02751 0.19 +0.1 192,700 + BACOVA_02751 0.19 -0.9 192,700 + BACOVA_02751 0.19 -0.4 192,702 + BACOVA_02751 0.19 -0.2 192,702 + BACOVA_02751 0.19 -0.6 192,757 + BACOVA_02751 0.22 -0.4 192,758 - BACOVA_02751 0.22 -0.6 192,788 + BACOVA_02751 0.24 -0.5 192,788 + BACOVA_02751 0.24 -0.4 192,789 - BACOVA_02751 0.24 +0.2 192,789 - BACOVA_02751 0.24 +0.3 192,789 - BACOVA_02751 0.24 +0.6 192,791 + BACOVA_02751 0.24 -0.4 192,799 + BACOVA_02751 0.24 -1.4 192,799 + BACOVA_02751 0.24 +0.3 192,800 - BACOVA_02751 0.24 -0.7 192,800 - BACOVA_02751 0.24 -3.1 192,804 - BACOVA_02751 0.24 -0.1 192,971 + BACOVA_02751 0.33 +0.2 192,971 + BACOVA_02751 0.33 -0.1 192,971 + BACOVA_02751 0.33 -0.2 193,046 - BACOVA_02751 0.37 +0.6 193,072 + BACOVA_02751 0.38 -0.5 193,072 + BACOVA_02751 0.38 -0.2 193,073 - BACOVA_02751 0.38 +1.2 193,075 + BACOVA_02751 0.38 -0.4 193,075 + BACOVA_02751 0.38 -0.4 193,101 + BACOVA_02751 0.40 -0.8 193,127 - BACOVA_02751 0.41 +0.1 193,145 + BACOVA_02751 0.42 -0.3 193,150 - BACOVA_02751 0.42 +1.6 193,195 + BACOVA_02751 0.45 +0.8 193,241 + BACOVA_02751 0.47 +0.6 193,255 - BACOVA_02751 0.48 -0.7 193,399 - BACOVA_02751 0.55 -0.6 193,426 - BACOVA_02751 0.57 +0.0 193,432 - BACOVA_02751 0.57 -2.5 193,458 + BACOVA_02751 0.58 +0.6 193,459 - BACOVA_02751 0.58 -0.0 193,459 - BACOVA_02751 0.58 -0.6 193,469 + BACOVA_02751 0.59 +1.0 193,469 + BACOVA_02751 0.59 +0.0 193,470 - BACOVA_02751 0.59 -0.3 193,499 + BACOVA_02751 0.60 +0.0 193,604 + BACOVA_02751 0.66 +0.9 193,605 - BACOVA_02751 0.66 +0.7 193,605 - BACOVA_02751 0.66 -0.3 193,608 - BACOVA_02751 0.66 +0.8 193,682 + BACOVA_02751 0.70 -0.4 193,683 - BACOVA_02751 0.70 +0.2 193,685 - BACOVA_02751 0.70 +0.5 193,685 - BACOVA_02751 0.70 -0.6 193,706 + BACOVA_02751 0.71 +0.3 193,712 + BACOVA_02751 0.71 -0.7 193,713 - BACOVA_02751 0.71 +0.5 193,713 - BACOVA_02751 0.71 -0.9 193,714 + BACOVA_02751 0.71 -0.2 193,715 - BACOVA_02751 0.71 -0.1 193,716 + BACOVA_02751 0.72 -0.2 193,716 + BACOVA_02751 0.72 +0.4 193,717 - BACOVA_02751 0.72 +0.2 193,722 + BACOVA_02751 0.72 +0.9 193,740 - BACOVA_02751 0.73 +0.5 193,743 + BACOVA_02751 0.73 -0.4 193,773 - BACOVA_02751 0.74 -1.2 193,780 + BACOVA_02751 0.75 -0.4 193,780 + BACOVA_02751 0.75 -0.2 193,780 + BACOVA_02751 0.75 -0.5 193,795 + BACOVA_02751 0.76 +0.3 193,804 + BACOVA_02751 0.76 -0.8 193,825 - BACOVA_02751 0.77 +1.2 193,902 - BACOVA_02751 0.81 -0.4 193,902 - BACOVA_02751 0.81 +0.2 193,902 - BACOVA_02751 0.81 -0.9 193,928 + BACOVA_02751 0.82 -0.8 194,011 + BACOVA_02751 0.87 +0.9 194,032 + BACOVA_02751 0.88 -0.4 194,032 + BACOVA_02751 0.88 -1.5 194,033 - BACOVA_02751 0.88 +0.2 194,053 + BACOVA_02751 0.89 -0.3 194,083 + +0.6 194,110 + +0.2 194,110 + -0.6 194,110 + +0.4 194,110 + -0.5 194,110 + -1.5 194,111 - -1.5 194,244 + +0.3 194,245 - -0.7 194,247 + -0.3 194,248 - +1.9 194,289 + +0.1 194,289 + +0.3 194,308 + -0.5 194,308 + +0.3 194,309 - -0.7 194,310 + +0.2 194,404 + -0.8 194,440 + -0.6 194,456 + -0.8 194,456 + -0.9 194,456 + -0.4 194,457 - -0.7 194,457 - +0.3 194,457 - +0.2 194,525 + -0.5 194,525 + +1.3 194,525 + +0.4 194,555 + -0.2 194,555 + -0.1 194,571 + -0.3 194,571 + +0.6 194,572 - -0.1 194,608 + BACOVA_02752 0.10 -0.7 194,608 + BACOVA_02752 0.10 +0.1 194,609 - BACOVA_02752 0.10 -0.3 194,609 - BACOVA_02752 0.10 +1.5 194,682 - BACOVA_02752 0.13 -0.9 194,709 + BACOVA_02752 0.13 +0.5 194,709 + BACOVA_02752 0.13 -0.4 194,742 + BACOVA_02752 0.14 -0.9 194,744 + BACOVA_02752 0.14 +0.2 194,744 + BACOVA_02752 0.14 +0.3 194,746 + BACOVA_02752 0.15 -1.9 194,789 + BACOVA_02752 0.16 +1.2 194,790 - BACOVA_02752 0.16 -0.1 194,790 - BACOVA_02752 0.16 -0.5 194,802 - BACOVA_02752 0.16 -1.2 194,802 - BACOVA_02752 0.16 -0.5 194,852 - BACOVA_02752 0.18 +0.3 194,858 + BACOVA_02752 0.18 +0.4 194,870 + BACOVA_02752 0.18 +0.7 194,872 + BACOVA_02752 0.18 +0.1 194,941 + BACOVA_02752 0.21 -0.7 194,942 - BACOVA_02752 0.21 -0.9 194,990 + BACOVA_02752 0.22 -0.5 195,015 + BACOVA_02752 0.23 -0.4 195,015 + BACOVA_02752 0.23 -0.1 195,016 - BACOVA_02752 0.23 -0.9 195,033 - BACOVA_02752 0.23 -2.9 195,041 + BACOVA_02752 0.24 -0.2 195,041 + BACOVA_02752 0.24 -0.5 195,077 + BACOVA_02752 0.25 -2.6 195,096 + BACOVA_02752 0.25 +0.0 195,099 - BACOVA_02752 0.25 -1.8 195,099 - BACOVA_02752 0.25 -0.5 195,177 - BACOVA_02752 0.28 +0.9 195,220 + BACOVA_02752 0.29 -0.4 195,267 + BACOVA_02752 0.31 +0.6 195,267 + BACOVA_02752 0.31 -1.0
Or see this region's nucleotide sequence