Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02007

Experiment: polygalacturonic 2.5 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_02006 and BACOVA_02007 are separated by 117 nucleotidesBACOVA_02007 and BACOVA_02008 overlap by 1 nucleotides BACOVA_02006: BACOVA_02006 - hypothetical protein, at 308,923 to 311,412 _02006 BACOVA_02007: BACOVA_02007 - MutS domain V protein, at 311,530 to 312,732 _02007 BACOVA_02008: BACOVA_02008 - transposase, IS4 family, at 312,732 to 313,925 _02008 Position (kb) 311 312 313Strain fitness (log2 ratio) -2 -1 0 1 2at 310.545 kb on + strand, within BACOVA_02006at 310.545 kb on + strand, within BACOVA_02006at 310.546 kb on - strand, within BACOVA_02006at 310.589 kb on + strand, within BACOVA_02006at 310.589 kb on + strand, within BACOVA_02006at 310.590 kb on - strand, within BACOVA_02006at 310.590 kb on - strand, within BACOVA_02006at 310.602 kb on + strand, within BACOVA_02006at 310.635 kb on + strand, within BACOVA_02006at 310.752 kb on - strand, within BACOVA_02006at 310.759 kb on - strand, within BACOVA_02006at 310.840 kb on - strand, within BACOVA_02006at 310.841 kb on + strand, within BACOVA_02006at 310.856 kb on - strand, within BACOVA_02006at 310.856 kb on - strand, within BACOVA_02006at 310.860 kb on + strand, within BACOVA_02006at 310.861 kb on - strand, within BACOVA_02006at 310.877 kb on - strand, within BACOVA_02006at 310.881 kb on - strand, within BACOVA_02006at 310.940 kb on + strand, within BACOVA_02006at 310.941 kb on - strand, within BACOVA_02006at 310.954 kb on - strand, within BACOVA_02006at 311.018 kb on - strand, within BACOVA_02006at 311.026 kb on + strand, within BACOVA_02006at 311.027 kb on - strand, within BACOVA_02006at 311.060 kb on + strand, within BACOVA_02006at 311.063 kb on + strand, within BACOVA_02006at 311.064 kb on - strand, within BACOVA_02006at 311.064 kb on - strand, within BACOVA_02006at 311.064 kb on - strand, within BACOVA_02006at 311.149 kb on - strand, within BACOVA_02006at 311.151 kb on + strand, within BACOVA_02006at 311.151 kb on + strand, within BACOVA_02006at 311.179 kb on - strandat 311.215 kb on - strandat 311.215 kb on - strandat 311.277 kb on - strandat 311.288 kb on + strandat 311.301 kb on + strandat 311.338 kb on - strandat 311.357 kb on + strandat 311.386 kb on - strandat 311.388 kb on + strandat 311.437 kb on + strandat 311.449 kb on + strandat 311.449 kb on + strandat 311.449 kb on + strandat 311.450 kb on - strandat 311.451 kb on + strandat 311.476 kb on - strandat 311.478 kb on - strandat 311.479 kb on + strandat 311.479 kb on + strandat 311.480 kb on - strandat 311.480 kb on - strandat 311.515 kb on + strandat 311.516 kb on - strandat 311.525 kb on + strandat 311.635 kb on - strandat 311.650 kb on - strandat 311.654 kb on + strand, within BACOVA_02007at 311.812 kb on + strand, within BACOVA_02007at 311.815 kb on + strand, within BACOVA_02007at 311.923 kb on - strand, within BACOVA_02007at 311.923 kb on - strand, within BACOVA_02007at 311.926 kb on - strand, within BACOVA_02007at 311.926 kb on - strand, within BACOVA_02007at 311.926 kb on - strand, within BACOVA_02007at 311.932 kb on - strand, within BACOVA_02007at 311.932 kb on - strand, within BACOVA_02007at 311.933 kb on + strand, within BACOVA_02007at 311.933 kb on + strand, within BACOVA_02007at 311.934 kb on - strand, within BACOVA_02007at 311.945 kb on + strand, within BACOVA_02007at 312.046 kb on - strand, within BACOVA_02007at 312.068 kb on - strand, within BACOVA_02007at 312.069 kb on + strand, within BACOVA_02007at 312.069 kb on + strand, within BACOVA_02007at 312.070 kb on - strand, within BACOVA_02007at 312.070 kb on - strand, within BACOVA_02007at 312.171 kb on + strand, within BACOVA_02007at 312.171 kb on + strand, within BACOVA_02007at 312.171 kb on + strand, within BACOVA_02007at 312.171 kb on + strand, within BACOVA_02007at 312.210 kb on + strand, within BACOVA_02007at 312.226 kb on + strand, within BACOVA_02007at 312.227 kb on - strand, within BACOVA_02007at 312.231 kb on - strand, within BACOVA_02007at 312.232 kb on + strand, within BACOVA_02007at 312.232 kb on + strand, within BACOVA_02007at 312.233 kb on - strand, within BACOVA_02007at 312.233 kb on - strand, within BACOVA_02007at 312.233 kb on - strand, within BACOVA_02007at 312.233 kb on - strand, within BACOVA_02007at 312.233 kb on - strand, within BACOVA_02007at 312.235 kb on - strand, within BACOVA_02007at 312.235 kb on - strand, within BACOVA_02007at 312.259 kb on + strand, within BACOVA_02007at 312.259 kb on + strand, within BACOVA_02007at 312.260 kb on - strand, within BACOVA_02007at 312.291 kb on - strand, within BACOVA_02007at 312.387 kb on + strand, within BACOVA_02007at 312.427 kb on + strand, within BACOVA_02007at 312.537 kb on + strand, within BACOVA_02007at 312.555 kb on + strand, within BACOVA_02007at 312.591 kb on - strand, within BACOVA_02007at 312.594 kb on - strand, within BACOVA_02007at 312.655 kb on - strandat 312.655 kb on - strandat 312.670 kb on - strandat 312.691 kb on + strandat 312.698 kb on + strandat 312.699 kb on - strandat 312.702 kb on + strandat 312.703 kb on - strandat 312.734 kb on - strandat 312.745 kb on - strandat 312.745 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic 2.5 mg/mL (C)
remove
310,545 + BACOVA_02006 0.65 +1.6
310,545 + BACOVA_02006 0.65 -0.8
310,546 - BACOVA_02006 0.65 -1.2
310,589 + BACOVA_02006 0.67 -0.1
310,589 + BACOVA_02006 0.67 +0.1
310,590 - BACOVA_02006 0.67 +0.7
310,590 - BACOVA_02006 0.67 +1.3
310,602 + BACOVA_02006 0.67 +0.8
310,635 + BACOVA_02006 0.69 -0.4
310,752 - BACOVA_02006 0.73 +1.0
310,759 - BACOVA_02006 0.74 +1.2
310,840 - BACOVA_02006 0.77 +0.7
310,841 + BACOVA_02006 0.77 -0.8
310,856 - BACOVA_02006 0.78 +0.7
310,856 - BACOVA_02006 0.78 -1.4
310,860 + BACOVA_02006 0.78 -0.7
310,861 - BACOVA_02006 0.78 +0.6
310,877 - BACOVA_02006 0.78 -1.4
310,881 - BACOVA_02006 0.79 +1.2
310,940 + BACOVA_02006 0.81 -0.2
310,941 - BACOVA_02006 0.81 -1.6
310,954 - BACOVA_02006 0.82 -0.4
311,018 - BACOVA_02006 0.84 -0.7
311,026 + BACOVA_02006 0.84 +0.2
311,027 - BACOVA_02006 0.84 -0.5
311,060 + BACOVA_02006 0.86 +0.5
311,063 + BACOVA_02006 0.86 +0.6
311,064 - BACOVA_02006 0.86 +0.4
311,064 - BACOVA_02006 0.86 +0.8
311,064 - BACOVA_02006 0.86 -1.2
311,149 - BACOVA_02006 0.89 -0.4
311,151 + BACOVA_02006 0.89 -0.8
311,151 + BACOVA_02006 0.89 -0.3
311,179 - +1.4
311,215 - +0.1
311,215 - -1.4
311,277 - +0.0
311,288 + +0.1
311,301 + -0.5
311,338 - -0.5
311,357 + -0.8
311,386 - +0.6
311,388 + +1.0
311,437 + -0.2
311,449 + +0.7
311,449 + +0.3
311,449 + +0.3
311,450 - +0.4
311,451 + -0.0
311,476 - -1.3
311,478 - +0.3
311,479 + +0.5
311,479 + +0.0
311,480 - +0.5
311,480 - -1.4
311,515 + -0.3
311,516 - -0.8
311,525 + +0.5
311,635 - +0.3
311,650 - +0.9
311,654 + BACOVA_02007 0.10 +0.4
311,812 + BACOVA_02007 0.23 +0.4
311,815 + BACOVA_02007 0.24 +0.9
311,923 - BACOVA_02007 0.33 -0.1
311,923 - BACOVA_02007 0.33 -0.3
311,926 - BACOVA_02007 0.33 -0.9
311,926 - BACOVA_02007 0.33 +0.0
311,926 - BACOVA_02007 0.33 -0.5
311,932 - BACOVA_02007 0.33 -0.6
311,932 - BACOVA_02007 0.33 +0.4
311,933 + BACOVA_02007 0.33 -0.4
311,933 + BACOVA_02007 0.33 +1.0
311,934 - BACOVA_02007 0.34 -0.8
311,945 + BACOVA_02007 0.34 +0.0
312,046 - BACOVA_02007 0.43 -0.5
312,068 - BACOVA_02007 0.45 +0.2
312,069 + BACOVA_02007 0.45 -0.6
312,069 + BACOVA_02007 0.45 +0.3
312,070 - BACOVA_02007 0.45 +0.1
312,070 - BACOVA_02007 0.45 +0.1
312,171 + BACOVA_02007 0.53 +0.3
312,171 + BACOVA_02007 0.53 -1.0
312,171 + BACOVA_02007 0.53 -0.4
312,171 + BACOVA_02007 0.53 +0.4
312,210 + BACOVA_02007 0.57 -0.0
312,226 + BACOVA_02007 0.58 +0.4
312,227 - BACOVA_02007 0.58 -0.5
312,231 - BACOVA_02007 0.58 -0.2
312,232 + BACOVA_02007 0.58 -0.2
312,232 + BACOVA_02007 0.58 -0.5
312,233 - BACOVA_02007 0.58 +1.3
312,233 - BACOVA_02007 0.58 -1.7
312,233 - BACOVA_02007 0.58 -1.5
312,233 - BACOVA_02007 0.58 +0.4
312,233 - BACOVA_02007 0.58 -0.3
312,235 - BACOVA_02007 0.59 +1.1
312,235 - BACOVA_02007 0.59 -0.1
312,259 + BACOVA_02007 0.61 -2.4
312,259 + BACOVA_02007 0.61 -0.7
312,260 - BACOVA_02007 0.61 +0.4
312,291 - BACOVA_02007 0.63 +0.4
312,387 + BACOVA_02007 0.71 -0.6
312,427 + BACOVA_02007 0.75 +0.9
312,537 + BACOVA_02007 0.84 +0.1
312,555 + BACOVA_02007 0.85 +0.1
312,591 - BACOVA_02007 0.88 -0.9
312,594 - BACOVA_02007 0.88 +0.3
312,655 - +1.0
312,655 - -0.1
312,670 - -0.4
312,691 + +2.0
312,698 + +1.3
312,699 - -1.1
312,702 + -0.2
312,703 - -1.2
312,734 - +0.2
312,745 - -0.1
312,745 - +0.6

Or see this region's nucleotide sequence