Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00189

Experiment: polygalacturonic 2.5 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	polygalacturonic 2.5 mg/mL (C)
3,079	+		BACOVA_00187	0.88	-1.5
3,106	+		BACOVA_00187	0.90	-0.3
3,107	-		BACOVA_00187	0.90	+0.5
3,107	-		BACOVA_00187	0.90	-0.7
3,139	-				+1.2
3,139	-				+0.4
3,203	-				+1.4
3,254	-				-2.4
3,254	-				-0.0
3,262	+				+0.6
3,262	+				+0.8
3,262	+				+0.4
3,263	-				+0.5
3,344	-				+0.1
3,351	+				+0.8
3,391	+				+1.3
3,391	+				-1.1
3,391	+				-0.2
3,396	+				-1.0
3,397	-				+0.4
3,397	-				+0.2
3,399	+				-0.4
3,400	-				+0.2
3,424	+				+2.7
3,425	-				-1.2
3,455	-				-0.5
3,477	+		BACOVA_00188	0.11	+1.6
3,511	+		BACOVA_00188	0.16	-0.2
3,512	-		BACOVA_00188	0.17	+0.8
3,554	+		BACOVA_00188	0.23	+1.4
3,578	+		BACOVA_00188	0.27	-0.1
3,578	+		BACOVA_00188	0.27	-0.2
3,590	+		BACOVA_00188	0.29	-0.1
3,591	-		BACOVA_00188	0.29	-0.2
3,591	-		BACOVA_00188	0.29	+0.7
3,591	-		BACOVA_00188	0.29	+1.1
3,591	-		BACOVA_00188	0.29	+0.6
3,591	-		BACOVA_00188	0.29	-3.2
3,594	-		BACOVA_00188	0.29	+1.8
3,606	-		BACOVA_00188	0.31	-0.1
3,606	-		BACOVA_00188	0.31	-0.7
3,618	+		BACOVA_00188	0.33	+0.6
3,619	-		BACOVA_00188	0.33	+0.1
3,639	+		BACOVA_00188	0.36	+0.8
3,640	-		BACOVA_00188	0.36	+1.6
3,640	-		BACOVA_00188	0.36	+0.7
3,640	-		BACOVA_00188	0.36	+0.5
3,641	+		BACOVA_00188	0.36	+0.4
3,641	+		BACOVA_00188	0.36	+2.2
3,642	-		BACOVA_00188	0.37	-1.5
3,656	+		BACOVA_00188	0.39	+0.9
3,677	+		BACOVA_00188	0.42	+0.5
3,709	-		BACOVA_00188	0.47	-0.0
3,711	+		BACOVA_00188	0.47	+0.8
3,712	-		BACOVA_00188	0.47	+0.2
3,713	+		BACOVA_00188	0.48	+0.9
3,713	+		BACOVA_00188	0.48	+1.0
3,828	+		BACOVA_00188	0.65	+0.6
3,832	-		BACOVA_00188	0.66	+0.3
3,849	-		BACOVA_00188	0.69	-1.2
3,849	-		BACOVA_00188	0.69	-0.5
3,863	+		BACOVA_00188	0.71	-0.3
3,878	-		BACOVA_00188	0.73	-0.0
3,946	-		BACOVA_00188	0.83	+0.6
3,971	+		BACOVA_00188	0.87	+0.3
3,995	+				+0.7
3,996	-				+0.3
3,996	-				-0.8
4,052	+				+0.4
4,053	-				-0.1
4,058	+				+0.1
4,116	+				+0.2
4,159	+				+1.6
4,162	+				+0.8
4,220	-		BACOVA_00189	0.12	-2.4
4,234	-		BACOVA_00189	0.13	+1.2
4,300	+		BACOVA_00189	0.18	-1.2
4,360	+		BACOVA_00189	0.22	+0.6
4,367	-		BACOVA_00189	0.23	+0.1
4,367	-		BACOVA_00189	0.23	+0.2
4,370	+		BACOVA_00189	0.23	+1.9
4,407	+		BACOVA_00189	0.26	+0.4
4,407	+		BACOVA_00189	0.26	+0.6
4,425	+		BACOVA_00189	0.27	+0.7
4,426	-		BACOVA_00189	0.27	-1.4
4,470	+		BACOVA_00189	0.30	+0.2
4,483	+		BACOVA_00189	0.31	+1.0
4,540	-		BACOVA_00189	0.35	-0.2
4,569	+		BACOVA_00189	0.37	+0.4
4,675	-		BACOVA_00189	0.45	+0.7
4,695	+		BACOVA_00189	0.47	-0.1
4,696	-		BACOVA_00189	0.47	+0.1
4,699	-		BACOVA_00189	0.47	+0.1
4,699	-		BACOVA_00189	0.47	-0.4
4,736	-		BACOVA_00189	0.50	+0.5
4,764	+		BACOVA_00189	0.52	-0.0
4,765	-		BACOVA_00189	0.52	-0.4
4,770	+		BACOVA_00189	0.52	+0.6
4,780	+		BACOVA_00189	0.53	+0.9
4,832	-		BACOVA_00189	0.57	-1.1
4,863	+		BACOVA_00189	0.59	+0.2
4,864	-		BACOVA_00189	0.59	-0.4
4,864	-		BACOVA_00189	0.59	+1.6
4,864	-		BACOVA_00189	0.59	+0.8
4,888	+		BACOVA_00189	0.61	-0.0
4,983	+		BACOVA_00189	0.68	+1.0
4,993	-		BACOVA_00189	0.68	+0.1
5,073	+		BACOVA_00189	0.74	-0.8
5,074	-		BACOVA_00189	0.74	+1.5
5,074	-		BACOVA_00189	0.74	+0.2
5,074	-		BACOVA_00189	0.74	-0.5
5,077	+		BACOVA_00189	0.74	+1.2
5,078	-		BACOVA_00189	0.74	-0.2
5,079	+		BACOVA_00189	0.75	-0.0
5,095	+		BACOVA_00189	0.76	+0.9
5,104	-		BACOVA_00189	0.76	-0.1
5,140	+		BACOVA_00189	0.79	+0.2
5,152	-		BACOVA_00189	0.80	+0.8
5,160	+		BACOVA_00189	0.80	-0.4
5,178	+		BACOVA_00189	0.82	-0.8
5,193	-		BACOVA_00189	0.83	+0.4
5,240	-		BACOVA_00189	0.86	-0.3
5,271	+		BACOVA_00189	0.89	+2.3
5,274	+		BACOVA_00189	0.89	+0.7
5,278	+		BACOVA_00189	0.89	-2.7
5,281	+		BACOVA_00189	0.89	+1.3
5,283	+		BACOVA_00189	0.89	-0.8
5,283	+		BACOVA_00189	0.89	+2.7
5,284	-		BACOVA_00189	0.89	+2.4
5,286	-		BACOVA_00189	0.90	+0.4
5,318	+				+0.7
5,318	+				+2.3
5,322	+				-0.3
5,323	-				+0.8
5,355	+				-1.0
5,356	-				-0.4
5,356	-				+0.3
5,356	-				-0.2
5,358	+				+0.1
5,359	-				+0.2
5,416	-				+0.7
5,416	-				-0.4
5,433	+				+0.7
5,450	+				-0.7
5,525	-		BACOVA_00190	0.16	-0.2
5,619	-		BACOVA_00190	0.29	+0.1
5,723	+		BACOVA_00190	0.44	+0.1
5,739	-		BACOVA_00190	0.46	-1.0
5,762	+		BACOVA_00190	0.50	+0.1
5,819	-		BACOVA_00190	0.58	-0.9
5,822	+		BACOVA_00190	0.58	+1.3
5,822	+		BACOVA_00190	0.58	+0.7
5,874	-		BACOVA_00190	0.66	+0.3
5,884	+		BACOVA_00190	0.67	+0.9
5,885	-		BACOVA_00190	0.67	+0.4
5,885	-		BACOVA_00190	0.67	+0.1
5,896	+		BACOVA_00190	0.69	-0.4
5,982	+		BACOVA_00190	0.81	-0.1
6,025	-		BACOVA_00190	0.87	+0.2
6,026	+		BACOVA_00190	0.88	+1.1
6,026	+		BACOVA_00190	0.88	+0.3
6,026	+		BACOVA_00190	0.88	-0.3
6,027	-		BACOVA_00190	0.88	-1.1
6,027	-		BACOVA_00190	0.88	+0.2
6,048	+				-0.6
6,048	+				-0.6
6,082	+				+0.3
6,098	+				-0.4
6,098	+				+0.4
6,141	+				-0.7
6,141	+				+1.1
6,142	-		BACOVA_00191	0.10	-0.3
6,147	+		BACOVA_00191	0.12	-0.0
6,179	-		BACOVA_00191	0.23	-1.8
6,180	+		BACOVA_00191	0.23	+2.1
6,180	+		BACOVA_00191	0.23	+0.1
6,180	+		BACOVA_00191	0.23	-0.4
6,261	+		BACOVA_00191	0.51	+0.3
6,265	+		BACOVA_00191	0.52	-0.0
6,288	+		BACOVA_00191	0.60	+1.7
6,297	+		BACOVA_00191	0.63	+0.6
6,312	+		BACOVA_00191	0.68	-0.8
6,313	-		BACOVA_00191	0.68	+1.6
6,377	-				+1.8
6,377	-				-1.2
6,384	-				+0.9
6,419	+				+1.0
6,421	+				-0.6
6,424	+				-0.2
6,425	-				-1.3