Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_00188

Experiment: polygalacturonic 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_00187 and BACOVA_00188 are separated by 142 nucleotidesBACOVA_00188 and BACOVA_00189 are separated by 4 nucleotides BACOVA_00187: BACOVA_00187 - polysaccharide biosynthesis protein, at 1,715 to 3,262 _00187 BACOVA_00188: BACOVA_00188 - bacterial transferase hexapeptide repeat protein, at 3,405 to 4,052 _00188 BACOVA_00189: BACOVA_00189 - AMP-binding enzyme, at 4,057 to 5,427 _00189 Position (kb) 3 4 5Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2.405 kb on - strand, within BACOVA_00187at 2.414 kb on - strand, within BACOVA_00187at 2.429 kb on + strand, within BACOVA_00187at 2.454 kb on - strand, within BACOVA_00187at 2.487 kb on + strand, within BACOVA_00187at 2.498 kb on + strand, within BACOVA_00187at 2.527 kb on + strand, within BACOVA_00187at 2.534 kb on - strand, within BACOVA_00187at 2.534 kb on - strand, within BACOVA_00187at 2.599 kb on - strand, within BACOVA_00187at 2.603 kb on + strand, within BACOVA_00187at 2.654 kb on - strand, within BACOVA_00187at 2.654 kb on - strand, within BACOVA_00187at 2.671 kb on + strand, within BACOVA_00187at 2.671 kb on + strand, within BACOVA_00187at 2.671 kb on + strand, within BACOVA_00187at 2.672 kb on - strand, within BACOVA_00187at 2.697 kb on + strand, within BACOVA_00187at 2.697 kb on + strand, within BACOVA_00187at 2.699 kb on + strand, within BACOVA_00187at 2.751 kb on - strand, within BACOVA_00187at 2.768 kb on + strand, within BACOVA_00187at 2.791 kb on - strand, within BACOVA_00187at 2.792 kb on + strand, within BACOVA_00187at 2.793 kb on - strand, within BACOVA_00187at 2.798 kb on - strand, within BACOVA_00187at 2.826 kb on + strand, within BACOVA_00187at 2.838 kb on - strand, within BACOVA_00187at 2.841 kb on - strand, within BACOVA_00187at 2.845 kb on + strand, within BACOVA_00187at 2.846 kb on - strand, within BACOVA_00187at 2.857 kb on + strand, within BACOVA_00187at 2.857 kb on + strand, within BACOVA_00187at 2.858 kb on - strand, within BACOVA_00187at 2.866 kb on + strand, within BACOVA_00187at 2.866 kb on + strand, within BACOVA_00187at 2.871 kb on + strand, within BACOVA_00187at 2.906 kb on - strand, within BACOVA_00187at 2.911 kb on + strand, within BACOVA_00187at 2.911 kb on + strand, within BACOVA_00187at 2.915 kb on + strand, within BACOVA_00187at 2.916 kb on - strand, within BACOVA_00187at 2.938 kb on - strand, within BACOVA_00187at 2.959 kb on + strand, within BACOVA_00187at 2.960 kb on - strand, within BACOVA_00187at 3.079 kb on + strand, within BACOVA_00187at 3.106 kb on + strand, within BACOVA_00187at 3.107 kb on - strand, within BACOVA_00187at 3.107 kb on - strand, within BACOVA_00187at 3.139 kb on - strandat 3.139 kb on - strandat 3.203 kb on - strandat 3.254 kb on - strandat 3.254 kb on - strandat 3.262 kb on + strandat 3.262 kb on + strandat 3.262 kb on + strandat 3.263 kb on - strandat 3.344 kb on - strandat 3.351 kb on + strandat 3.391 kb on + strandat 3.391 kb on + strandat 3.391 kb on + strandat 3.396 kb on + strandat 3.397 kb on - strandat 3.397 kb on - strandat 3.399 kb on + strandat 3.400 kb on - strandat 3.424 kb on + strandat 3.425 kb on - strandat 3.455 kb on - strandat 3.477 kb on + strand, within BACOVA_00188at 3.511 kb on + strand, within BACOVA_00188at 3.512 kb on - strand, within BACOVA_00188at 3.554 kb on + strand, within BACOVA_00188at 3.578 kb on + strand, within BACOVA_00188at 3.578 kb on + strand, within BACOVA_00188at 3.590 kb on + strand, within BACOVA_00188at 3.591 kb on - strand, within BACOVA_00188at 3.591 kb on - strand, within BACOVA_00188at 3.591 kb on - strand, within BACOVA_00188at 3.591 kb on - strand, within BACOVA_00188at 3.591 kb on - strand, within BACOVA_00188at 3.594 kb on - strand, within BACOVA_00188at 3.606 kb on - strand, within BACOVA_00188at 3.606 kb on - strand, within BACOVA_00188at 3.618 kb on + strand, within BACOVA_00188at 3.619 kb on - strand, within BACOVA_00188at 3.639 kb on + strand, within BACOVA_00188at 3.640 kb on - strand, within BACOVA_00188at 3.640 kb on - strand, within BACOVA_00188at 3.640 kb on - strand, within BACOVA_00188at 3.641 kb on + strand, within BACOVA_00188at 3.641 kb on + strand, within BACOVA_00188at 3.642 kb on - strand, within BACOVA_00188at 3.656 kb on + strand, within BACOVA_00188at 3.677 kb on + strand, within BACOVA_00188at 3.709 kb on - strand, within BACOVA_00188at 3.711 kb on + strand, within BACOVA_00188at 3.712 kb on - strand, within BACOVA_00188at 3.713 kb on + strand, within BACOVA_00188at 3.713 kb on + strand, within BACOVA_00188at 3.828 kb on + strand, within BACOVA_00188at 3.832 kb on - strand, within BACOVA_00188at 3.849 kb on - strand, within BACOVA_00188at 3.849 kb on - strand, within BACOVA_00188at 3.863 kb on + strand, within BACOVA_00188at 3.878 kb on - strand, within BACOVA_00188at 3.946 kb on - strand, within BACOVA_00188at 3.971 kb on + strand, within BACOVA_00188at 3.995 kb on + strandat 3.996 kb on - strandat 3.996 kb on - strandat 4.052 kb on + strandat 4.053 kb on - strandat 4.058 kb on + strandat 4.116 kb on + strandat 4.159 kb on + strandat 4.162 kb on + strandat 4.220 kb on - strand, within BACOVA_00189at 4.234 kb on - strand, within BACOVA_00189at 4.300 kb on + strand, within BACOVA_00189at 4.360 kb on + strand, within BACOVA_00189at 4.367 kb on - strand, within BACOVA_00189at 4.367 kb on - strand, within BACOVA_00189at 4.370 kb on + strand, within BACOVA_00189at 4.407 kb on + strand, within BACOVA_00189at 4.407 kb on + strand, within BACOVA_00189at 4.425 kb on + strand, within BACOVA_00189at 4.426 kb on - strand, within BACOVA_00189at 4.470 kb on + strand, within BACOVA_00189at 4.483 kb on + strand, within BACOVA_00189at 4.540 kb on - strand, within BACOVA_00189at 4.569 kb on + strand, within BACOVA_00189at 4.675 kb on - strand, within BACOVA_00189at 4.695 kb on + strand, within BACOVA_00189at 4.696 kb on - strand, within BACOVA_00189at 4.699 kb on - strand, within BACOVA_00189at 4.699 kb on - strand, within BACOVA_00189at 4.736 kb on - strand, within BACOVA_00189at 4.764 kb on + strand, within BACOVA_00189at 4.765 kb on - strand, within BACOVA_00189at 4.770 kb on + strand, within BACOVA_00189at 4.780 kb on + strand, within BACOVA_00189at 4.832 kb on - strand, within BACOVA_00189at 4.863 kb on + strand, within BACOVA_00189at 4.864 kb on - strand, within BACOVA_00189at 4.864 kb on - strand, within BACOVA_00189at 4.864 kb on - strand, within BACOVA_00189at 4.888 kb on + strand, within BACOVA_00189at 4.983 kb on + strand, within BACOVA_00189at 4.993 kb on - strand, within BACOVA_00189

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Per-strain Table

Position Strand Gene LocusTag Fraction polygalacturonic 2.5 mg/mL (C)
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2,405 - BACOVA_00187 0.45 +0.6
2,414 - BACOVA_00187 0.45 -0.2
2,429 + BACOVA_00187 0.46 +0.7
2,454 - BACOVA_00187 0.48 -1.2
2,487 + BACOVA_00187 0.50 -0.2
2,498 + BACOVA_00187 0.51 +0.6
2,527 + BACOVA_00187 0.52 +0.6
2,534 - BACOVA_00187 0.53 +0.9
2,534 - BACOVA_00187 0.53 -1.0
2,599 - BACOVA_00187 0.57 +0.1
2,603 + BACOVA_00187 0.57 -0.2
2,654 - BACOVA_00187 0.61 +0.1
2,654 - BACOVA_00187 0.61 -0.7
2,671 + BACOVA_00187 0.62 +0.1
2,671 + BACOVA_00187 0.62 +0.3
2,671 + BACOVA_00187 0.62 -0.7
2,672 - BACOVA_00187 0.62 +0.2
2,697 + BACOVA_00187 0.63 +2.1
2,697 + BACOVA_00187 0.63 +0.8
2,699 + BACOVA_00187 0.64 +0.9
2,751 - BACOVA_00187 0.67 +0.7
2,768 + BACOVA_00187 0.68 -0.1
2,791 - BACOVA_00187 0.70 -0.7
2,792 + BACOVA_00187 0.70 +0.6
2,793 - BACOVA_00187 0.70 -0.8
2,798 - BACOVA_00187 0.70 +0.1
2,826 + BACOVA_00187 0.72 +0.2
2,838 - BACOVA_00187 0.73 +1.2
2,841 - BACOVA_00187 0.73 -2.5
2,845 + BACOVA_00187 0.73 -0.3
2,846 - BACOVA_00187 0.73 +1.0
2,857 + BACOVA_00187 0.74 -0.3
2,857 + BACOVA_00187 0.74 -1.0
2,858 - BACOVA_00187 0.74 +0.5
2,866 + BACOVA_00187 0.74 +0.5
2,866 + BACOVA_00187 0.74 +0.6
2,871 + BACOVA_00187 0.75 +0.7
2,906 - BACOVA_00187 0.77 +0.0
2,911 + BACOVA_00187 0.77 -0.5
2,911 + BACOVA_00187 0.77 +0.2
2,915 + BACOVA_00187 0.78 -0.8
2,916 - BACOVA_00187 0.78 +0.7
2,938 - BACOVA_00187 0.79 +0.6
2,959 + BACOVA_00187 0.80 -0.4
2,960 - BACOVA_00187 0.80 -0.0
3,079 + BACOVA_00187 0.88 -1.5
3,106 + BACOVA_00187 0.90 -0.3
3,107 - BACOVA_00187 0.90 +0.5
3,107 - BACOVA_00187 0.90 -0.7
3,139 - +1.2
3,139 - +0.4
3,203 - +1.4
3,254 - -2.4
3,254 - -0.0
3,262 + +0.6
3,262 + +0.8
3,262 + +0.4
3,263 - +0.5
3,344 - +0.1
3,351 + +0.8
3,391 + +1.3
3,391 + -1.1
3,391 + -0.2
3,396 + -1.0
3,397 - +0.4
3,397 - +0.2
3,399 + -0.4
3,400 - +0.2
3,424 + +2.7
3,425 - -1.2
3,455 - -0.5
3,477 + BACOVA_00188 0.11 +1.6
3,511 + BACOVA_00188 0.16 -0.2
3,512 - BACOVA_00188 0.17 +0.8
3,554 + BACOVA_00188 0.23 +1.4
3,578 + BACOVA_00188 0.27 -0.1
3,578 + BACOVA_00188 0.27 -0.2
3,590 + BACOVA_00188 0.29 -0.1
3,591 - BACOVA_00188 0.29 -0.2
3,591 - BACOVA_00188 0.29 +0.7
3,591 - BACOVA_00188 0.29 +1.1
3,591 - BACOVA_00188 0.29 +0.6
3,591 - BACOVA_00188 0.29 -3.2
3,594 - BACOVA_00188 0.29 +1.8
3,606 - BACOVA_00188 0.31 -0.1
3,606 - BACOVA_00188 0.31 -0.7
3,618 + BACOVA_00188 0.33 +0.6
3,619 - BACOVA_00188 0.33 +0.1
3,639 + BACOVA_00188 0.36 +0.8
3,640 - BACOVA_00188 0.36 +1.6
3,640 - BACOVA_00188 0.36 +0.7
3,640 - BACOVA_00188 0.36 +0.5
3,641 + BACOVA_00188 0.36 +0.4
3,641 + BACOVA_00188 0.36 +2.2
3,642 - BACOVA_00188 0.37 -1.5
3,656 + BACOVA_00188 0.39 +0.9
3,677 + BACOVA_00188 0.42 +0.5
3,709 - BACOVA_00188 0.47 -0.0
3,711 + BACOVA_00188 0.47 +0.8
3,712 - BACOVA_00188 0.47 +0.2
3,713 + BACOVA_00188 0.48 +0.9
3,713 + BACOVA_00188 0.48 +1.0
3,828 + BACOVA_00188 0.65 +0.6
3,832 - BACOVA_00188 0.66 +0.3
3,849 - BACOVA_00188 0.69 -1.2
3,849 - BACOVA_00188 0.69 -0.5
3,863 + BACOVA_00188 0.71 -0.3
3,878 - BACOVA_00188 0.73 -0.0
3,946 - BACOVA_00188 0.83 +0.6
3,971 + BACOVA_00188 0.87 +0.3
3,995 + +0.7
3,996 - +0.3
3,996 - -0.8
4,052 + +0.4
4,053 - -0.1
4,058 + +0.1
4,116 + +0.2
4,159 + +1.6
4,162 + +0.8
4,220 - BACOVA_00189 0.12 -2.4
4,234 - BACOVA_00189 0.13 +1.2
4,300 + BACOVA_00189 0.18 -1.2
4,360 + BACOVA_00189 0.22 +0.6
4,367 - BACOVA_00189 0.23 +0.1
4,367 - BACOVA_00189 0.23 +0.2
4,370 + BACOVA_00189 0.23 +1.9
4,407 + BACOVA_00189 0.26 +0.4
4,407 + BACOVA_00189 0.26 +0.6
4,425 + BACOVA_00189 0.27 +0.7
4,426 - BACOVA_00189 0.27 -1.4
4,470 + BACOVA_00189 0.30 +0.2
4,483 + BACOVA_00189 0.31 +1.0
4,540 - BACOVA_00189 0.35 -0.2
4,569 + BACOVA_00189 0.37 +0.4
4,675 - BACOVA_00189 0.45 +0.7
4,695 + BACOVA_00189 0.47 -0.1
4,696 - BACOVA_00189 0.47 +0.1
4,699 - BACOVA_00189 0.47 +0.1
4,699 - BACOVA_00189 0.47 -0.4
4,736 - BACOVA_00189 0.50 +0.5
4,764 + BACOVA_00189 0.52 -0.0
4,765 - BACOVA_00189 0.52 -0.4
4,770 + BACOVA_00189 0.52 +0.6
4,780 + BACOVA_00189 0.53 +0.9
4,832 - BACOVA_00189 0.57 -1.1
4,863 + BACOVA_00189 0.59 +0.2
4,864 - BACOVA_00189 0.59 -0.4
4,864 - BACOVA_00189 0.59 +1.6
4,864 - BACOVA_00189 0.59 +0.8
4,888 + BACOVA_00189 0.61 -0.0
4,983 + BACOVA_00189 0.68 +1.0
4,993 - BACOVA_00189 0.68 +0.1

Or see this region's nucleotide sequence