Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_03002 and MPMX26_03003 are separated by 110 nucleotides MPMX26_03003 and MPMX26_03004 are separated by 6 nucleotides MPMX26_03004 and MPMX26_03005 are separated by 40 nucleotides MPMX26_03005 and MPMX26_03006 are separated by 100 nucleotides
MPMX26_03002: MPMX26_03002 - HTH-type transcriptional regulator DmlR, at 3,116,331 to 3,117,239
_03002
MPMX26_03003: MPMX26_03003 - 2,5-diketo-D-gluconic acid reductase B, at 3,117,350 to 3,118,153
_03003
MPMX26_03004: MPMX26_03004 - Inner membrane transport protein YdhP, at 3,118,160 to 3,119,326
_03004
MPMX26_03005: MPMX26_03005 - hypothetical protein, at 3,119,367 to 3,119,987
_03005
MPMX26_03006: MPMX26_03006 - 4-hydroxy-tetrahydrodipicolinate reductase, at 3,120,088 to 3,120,909
_03006
Position (kb)
3118
3119
3120 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3117.172 kb on - strand at 3117.172 kb on - strand at 3117.172 kb on - strand at 3117.172 kb on - strand at 3117.172 kb on - strand at 3117.172 kb on - strand at 3117.172 kb on - strand at 3117.172 kb on - strand at 3117.195 kb on - strand at 3117.200 kb on - strand at 3117.200 kb on - strand at 3117.200 kb on - strand at 3117.202 kb on - strand at 3117.202 kb on - strand at 3117.202 kb on - strand at 3117.431 kb on + strand, within MPMX26_03003 at 3117.431 kb on + strand, within MPMX26_03003 at 3117.431 kb on + strand, within MPMX26_03003 at 3117.455 kb on + strand, within MPMX26_03003 at 3117.566 kb on + strand, within MPMX26_03003 at 3117.584 kb on + strand, within MPMX26_03003 at 3117.589 kb on + strand, within MPMX26_03003 at 3117.604 kb on + strand, within MPMX26_03003 at 3117.612 kb on - strand, within MPMX26_03003 at 3117.658 kb on + strand, within MPMX26_03003 at 3117.658 kb on + strand, within MPMX26_03003 at 3117.658 kb on + strand, within MPMX26_03003 at 3117.658 kb on + strand, within MPMX26_03003 at 3117.658 kb on + strand, within MPMX26_03003 at 3117.658 kb on + strand, within MPMX26_03003 at 3117.666 kb on - strand, within MPMX26_03003 at 3117.666 kb on - strand, within MPMX26_03003 at 3117.666 kb on - strand, within MPMX26_03003 at 3117.856 kb on + strand, within MPMX26_03003 at 3117.864 kb on + strand, within MPMX26_03003 at 3117.872 kb on - strand, within MPMX26_03003 at 3117.892 kb on + strand, within MPMX26_03003 at 3117.898 kb on + strand, within MPMX26_03003 at 3117.915 kb on + strand, within MPMX26_03003 at 3117.938 kb on + strand, within MPMX26_03003 at 3117.938 kb on + strand, within MPMX26_03003 at 3117.938 kb on + strand, within MPMX26_03003 at 3117.938 kb on + strand, within MPMX26_03003 at 3117.973 kb on + strand, within MPMX26_03003 at 3117.973 kb on + strand, within MPMX26_03003 at 3117.973 kb on + strand, within MPMX26_03003 at 3117.973 kb on + strand, within MPMX26_03003 at 3117.973 kb on + strand, within MPMX26_03003 at 3117.973 kb on + strand, within MPMX26_03003 at 3117.973 kb on + strand, within MPMX26_03003 at 3117.973 kb on + strand, within MPMX26_03003 at 3117.973 kb on + strand, within MPMX26_03003 at 3117.978 kb on + strand, within MPMX26_03003 at 3117.978 kb on + strand, within MPMX26_03003 at 3117.979 kb on + strand, within MPMX26_03003 at 3117.981 kb on - strand, within MPMX26_03003 at 3117.981 kb on - strand, within MPMX26_03003 at 3117.983 kb on + strand, within MPMX26_03003 at 3117.986 kb on - strand, within MPMX26_03003 at 3118.028 kb on + strand, within MPMX26_03003 at 3118.122 kb on + strand at 3118.132 kb on + strand at 3118.232 kb on + strand at 3118.322 kb on - strand, within MPMX26_03004 at 3118.452 kb on + strand, within MPMX26_03004 at 3118.452 kb on + strand, within MPMX26_03004 at 3118.460 kb on - strand, within MPMX26_03004 at 3118.470 kb on + strand, within MPMX26_03004 at 3118.478 kb on - strand, within MPMX26_03004 at 3118.500 kb on + strand, within MPMX26_03004 at 3118.518 kb on + strand, within MPMX26_03004 at 3118.577 kb on + strand, within MPMX26_03004 at 3118.659 kb on + strand, within MPMX26_03004 at 3118.659 kb on + strand, within MPMX26_03004 at 3118.667 kb on - strand, within MPMX26_03004 at 3118.694 kb on + strand, within MPMX26_03004 at 3118.706 kb on + strand, within MPMX26_03004 at 3118.715 kb on + strand, within MPMX26_03004 at 3118.898 kb on + strand, within MPMX26_03004 at 3118.997 kb on + strand, within MPMX26_03004 at 3119.104 kb on + strand, within MPMX26_03004 at 3119.184 kb on + strand, within MPMX26_03004 at 3119.186 kb on + strand, within MPMX26_03004 at 3119.231 kb on + strand at 3119.249 kb on + strand at 3119.249 kb on + strand at 3119.249 kb on + strand at 3119.249 kb on + strand at 3119.302 kb on + strand at 3119.847 kb on + strand, within MPMX26_03005
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 3,117,172 - -0.3 3,117,172 - -0.4 3,117,172 - +0.2 3,117,172 - -0.4 3,117,172 - -0.0 3,117,172 - -0.3 3,117,172 - -0.8 3,117,172 - +0.5 3,117,195 - -0.3 3,117,200 - -0.1 3,117,200 - -0.1 3,117,200 - -0.5 3,117,202 - +0.3 3,117,202 - -0.2 3,117,202 - -0.8 3,117,431 + MPMX26_03003 0.10 -0.9 3,117,431 + MPMX26_03003 0.10 +0.8 3,117,431 + MPMX26_03003 0.10 +0.5 3,117,455 + MPMX26_03003 0.13 +0.1 3,117,566 + MPMX26_03003 0.27 +0.2 3,117,584 + MPMX26_03003 0.29 +1.3 3,117,589 + MPMX26_03003 0.30 +1.2 3,117,604 + MPMX26_03003 0.32 +0.6 3,117,612 - MPMX26_03003 0.33 +0.9 3,117,658 + MPMX26_03003 0.38 +1.5 3,117,658 + MPMX26_03003 0.38 +0.2 3,117,658 + MPMX26_03003 0.38 -0.3 3,117,658 + MPMX26_03003 0.38 -1.6 3,117,658 + MPMX26_03003 0.38 +1.3 3,117,658 + MPMX26_03003 0.38 +1.3 3,117,666 - MPMX26_03003 0.39 +1.6 3,117,666 - MPMX26_03003 0.39 +0.1 3,117,666 - MPMX26_03003 0.39 +0.7 3,117,856 + MPMX26_03003 0.63 +1.4 3,117,864 + MPMX26_03003 0.64 -0.4 3,117,872 - MPMX26_03003 0.65 +1.6 3,117,892 + MPMX26_03003 0.67 -0.9 3,117,898 + MPMX26_03003 0.68 -0.3 3,117,915 + MPMX26_03003 0.70 -0.8 3,117,938 + MPMX26_03003 0.73 -0.1 3,117,938 + MPMX26_03003 0.73 +0.2 3,117,938 + MPMX26_03003 0.73 -0.9 3,117,938 + MPMX26_03003 0.73 +0.9 3,117,973 + MPMX26_03003 0.77 -0.2 3,117,973 + MPMX26_03003 0.77 -0.2 3,117,973 + MPMX26_03003 0.77 +0.7 3,117,973 + MPMX26_03003 0.77 +0.6 3,117,973 + MPMX26_03003 0.77 -0.3 3,117,973 + MPMX26_03003 0.77 -0.9 3,117,973 + MPMX26_03003 0.77 +0.1 3,117,973 + MPMX26_03003 0.77 -1.0 3,117,973 + MPMX26_03003 0.77 -0.5 3,117,978 + MPMX26_03003 0.78 -0.8 3,117,978 + MPMX26_03003 0.78 +1.0 3,117,979 + MPMX26_03003 0.78 +0.8 3,117,981 - MPMX26_03003 0.78 +0.7 3,117,981 - MPMX26_03003 0.78 -0.8 3,117,983 + MPMX26_03003 0.79 -0.1 3,117,986 - MPMX26_03003 0.79 +1.7 3,118,028 + MPMX26_03003 0.84 +1.3 3,118,122 + -1.6 3,118,132 + -1.2 3,118,232 + +0.1 3,118,322 - MPMX26_03004 0.14 -0.1 3,118,452 + MPMX26_03004 0.25 -0.2 3,118,452 + MPMX26_03004 0.25 -3.0 3,118,460 - MPMX26_03004 0.26 -1.9 3,118,470 + MPMX26_03004 0.27 +0.7 3,118,478 - MPMX26_03004 0.27 -1.2 3,118,500 + MPMX26_03004 0.29 -0.1 3,118,518 + MPMX26_03004 0.31 -1.1 3,118,577 + MPMX26_03004 0.36 +1.6 3,118,659 + MPMX26_03004 0.43 -0.2 3,118,659 + MPMX26_03004 0.43 -0.7 3,118,667 - MPMX26_03004 0.43 +1.8 3,118,694 + MPMX26_03004 0.46 +0.3 3,118,706 + MPMX26_03004 0.47 +0.3 3,118,715 + MPMX26_03004 0.48 +1.0 3,118,898 + MPMX26_03004 0.63 +0.9 3,118,997 + MPMX26_03004 0.72 -1.1 3,119,104 + MPMX26_03004 0.81 +0.6 3,119,184 + MPMX26_03004 0.88 -0.5 3,119,186 + MPMX26_03004 0.88 +0.7 3,119,231 + -1.1 3,119,249 + -0.1 3,119,249 + -0.9 3,119,249 + +1.1 3,119,249 + +1.9 3,119,302 + +0.5 3,119,847 + MPMX26_03005 0.77 +0.8
Or see this region's nucleotide sequence