Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01237

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01236 and MPMX26_01237 are separated by 156 nucleotidesMPMX26_01237 and MPMX26_01238 are separated by 21 nucleotidesMPMX26_01238 and MPMX26_01239 are separated by 84 nucleotidesMPMX26_01239 and MPMX26_01240 overlap by 4 nucleotides MPMX26_01236: MPMX26_01236 - 30S ribosomal protein S1, at 1,306,890 to 1,308,563 _01236 MPMX26_01237: MPMX26_01237 - Integration host factor subunit beta, at 1,308,720 to 1,309,025 _01237 MPMX26_01238: MPMX26_01238 - hypothetical protein, at 1,309,047 to 1,309,412 _01238 MPMX26_01239: MPMX26_01239 - hypothetical protein, at 1,309,497 to 1,309,823 _01239 MPMX26_01240: MPMX26_01240 - hypothetical protein, at 1,309,820 to 1,310,476 _01240 Position (kb) 1308 1309 1310Strain fitness (log2 ratio) -1 0 1 2 3at 1308.286 kb on + strand, within MPMX26_01236at 1308.633 kb on + strandat 1308.633 kb on + strandat 1308.641 kb on + strandat 1308.686 kb on + strandat 1308.992 kb on + strand, within MPMX26_01237at 1309.019 kb on + strandat 1309.033 kb on + strandat 1309.043 kb on + strandat 1309.043 kb on + strandat 1309.099 kb on + strand, within MPMX26_01238at 1309.151 kb on + strand, within MPMX26_01238at 1309.151 kb on + strand, within MPMX26_01238at 1309.189 kb on + strand, within MPMX26_01238at 1309.225 kb on + strand, within MPMX26_01238at 1309.230 kb on + strand, within MPMX26_01238at 1309.245 kb on + strand, within MPMX26_01238at 1309.275 kb on + strand, within MPMX26_01238at 1309.307 kb on + strand, within MPMX26_01238at 1309.307 kb on + strand, within MPMX26_01238at 1309.307 kb on + strand, within MPMX26_01238at 1309.307 kb on + strand, within MPMX26_01238at 1309.307 kb on + strand, within MPMX26_01238at 1309.312 kb on + strand, within MPMX26_01238at 1309.317 kb on + strand, within MPMX26_01238at 1309.332 kb on + strand, within MPMX26_01238at 1309.396 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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1,308,286 + MPMX26_01236 0.83 +0.1
1,308,633 + +0.2
1,308,633 + -1.2
1,308,641 + -0.4
1,308,686 + -1.2
1,308,992 + MPMX26_01237 0.89 +2.1
1,309,019 + +2.5
1,309,033 + +2.2
1,309,043 + +2.6
1,309,043 + +2.4
1,309,099 + MPMX26_01238 0.14 +2.9
1,309,151 + MPMX26_01238 0.28 +2.5
1,309,151 + MPMX26_01238 0.28 +2.8
1,309,189 + MPMX26_01238 0.39 +3.3
1,309,225 + MPMX26_01238 0.49 +3.3
1,309,230 + MPMX26_01238 0.50 +2.7
1,309,245 + MPMX26_01238 0.54 +2.7
1,309,275 + MPMX26_01238 0.62 +2.1
1,309,307 + MPMX26_01238 0.71 +2.3
1,309,307 + MPMX26_01238 0.71 +2.8
1,309,307 + MPMX26_01238 0.71 +2.6
1,309,307 + MPMX26_01238 0.71 +2.6
1,309,307 + MPMX26_01238 0.71 +2.8
1,309,312 + MPMX26_01238 0.72 +3.2
1,309,317 + MPMX26_01238 0.74 +2.3
1,309,332 + MPMX26_01238 0.78 +2.0
1,309,396 + +0.5

Or see this region's nucleotide sequence