Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01234

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01232 and MPMX26_01233 are separated by 3 nucleotidesMPMX26_01233 and MPMX26_01234 are separated by 82 nucleotidesMPMX26_01234 and MPMX26_01235 are separated by 10 nucleotidesMPMX26_01235 and MPMX26_01236 are separated by 105 nucleotides MPMX26_01232: MPMX26_01232 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 1,303,954 to 1,305,078 _01232 MPMX26_01233: MPMX26_01233 - tRNA-specific adenosine deaminase, at 1,305,082 to 1,305,573 _01233 MPMX26_01234: MPMX26_01234 - hypothetical protein, at 1,305,656 to 1,306,090 _01234 MPMX26_01235: MPMX26_01235 - Cytidylate kinase, at 1,306,101 to 1,306,784 _01235 MPMX26_01236: MPMX26_01236 - 30S ribosomal protein S1, at 1,306,890 to 1,308,563 _01236 Position (kb) 1305 1306 1307Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1304.678 kb on + strand, within MPMX26_01232at 1304.718 kb on + strand, within MPMX26_01232at 1304.737 kb on + strand, within MPMX26_01232at 1304.803 kb on + strand, within MPMX26_01232at 1304.807 kb on + strand, within MPMX26_01232at 1304.864 kb on + strand, within MPMX26_01232at 1304.933 kb on + strand, within MPMX26_01232at 1304.938 kb on + strand, within MPMX26_01232at 1304.994 kb on + strandat 1304.999 kb on + strandat 1305.037 kb on + strandat 1305.041 kb on + strandat 1305.051 kb on + strandat 1305.077 kb on + strandat 1305.105 kb on + strandat 1305.539 kb on + strandat 1305.544 kb on + strandat 1305.553 kb on + strandat 1305.561 kb on + strandat 1305.692 kb on + strandat 1305.692 kb on + strandat 1305.716 kb on + strand, within MPMX26_01234at 1305.733 kb on + strand, within MPMX26_01234at 1305.750 kb on + strand, within MPMX26_01234at 1305.750 kb on + strand, within MPMX26_01234at 1305.752 kb on + strand, within MPMX26_01234at 1305.752 kb on + strand, within MPMX26_01234at 1305.752 kb on + strand, within MPMX26_01234at 1305.752 kb on + strand, within MPMX26_01234at 1305.752 kb on + strand, within MPMX26_01234at 1305.754 kb on + strand, within MPMX26_01234at 1305.771 kb on + strand, within MPMX26_01234at 1305.785 kb on + strand, within MPMX26_01234at 1305.805 kb on + strand, within MPMX26_01234at 1305.805 kb on + strand, within MPMX26_01234at 1305.805 kb on + strand, within MPMX26_01234at 1305.805 kb on + strand, within MPMX26_01234at 1305.805 kb on + strand, within MPMX26_01234at 1305.829 kb on + strand, within MPMX26_01234at 1305.838 kb on + strand, within MPMX26_01234at 1305.838 kb on + strand, within MPMX26_01234at 1305.838 kb on + strand, within MPMX26_01234at 1305.838 kb on + strand, within MPMX26_01234at 1305.838 kb on + strand, within MPMX26_01234at 1305.838 kb on + strand, within MPMX26_01234at 1305.838 kb on + strand, within MPMX26_01234at 1305.838 kb on + strand, within MPMX26_01234at 1305.838 kb on + strand, within MPMX26_01234at 1305.838 kb on + strand, within MPMX26_01234at 1305.950 kb on + strand, within MPMX26_01234at 1305.952 kb on + strand, within MPMX26_01234at 1305.997 kb on + strand, within MPMX26_01234at 1305.997 kb on + strand, within MPMX26_01234at 1306.036 kb on + strand, within MPMX26_01234at 1306.036 kb on + strand, within MPMX26_01234at 1306.036 kb on + strand, within MPMX26_01234at 1306.036 kb on + strand, within MPMX26_01234at 1306.036 kb on + strand, within MPMX26_01234at 1306.036 kb on + strand, within MPMX26_01234at 1306.036 kb on + strand, within MPMX26_01234at 1306.036 kb on + strand, within MPMX26_01234at 1306.036 kb on + strand, within MPMX26_01234at 1306.036 kb on + strand, within MPMX26_01234at 1306.036 kb on + strand, within MPMX26_01234at 1306.036 kb on + strand, within MPMX26_01234at 1306.036 kb on + strand, within MPMX26_01234

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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1,304,678 + MPMX26_01232 0.64 -0.4
1,304,718 + MPMX26_01232 0.68 -1.8
1,304,737 + MPMX26_01232 0.70 -3.0
1,304,803 + MPMX26_01232 0.75 -1.6
1,304,807 + MPMX26_01232 0.76 -2.8
1,304,864 + MPMX26_01232 0.81 -1.8
1,304,933 + MPMX26_01232 0.87 -1.1
1,304,938 + MPMX26_01232 0.87 -1.1
1,304,994 + -1.2
1,304,999 + -0.4
1,305,037 + -1.8
1,305,041 + -1.3
1,305,051 + -1.2
1,305,077 + -1.0
1,305,105 + +0.1
1,305,539 + +0.2
1,305,544 + +1.6
1,305,553 + +2.0
1,305,561 + +0.1
1,305,692 + +0.2
1,305,692 + -0.8
1,305,716 + MPMX26_01234 0.14 +1.4
1,305,733 + MPMX26_01234 0.18 +0.8
1,305,750 + MPMX26_01234 0.22 +1.6
1,305,750 + MPMX26_01234 0.22 +2.4
1,305,752 + MPMX26_01234 0.22 +1.0
1,305,752 + MPMX26_01234 0.22 +0.8
1,305,752 + MPMX26_01234 0.22 +0.3
1,305,752 + MPMX26_01234 0.22 +0.7
1,305,752 + MPMX26_01234 0.22 -0.3
1,305,754 + MPMX26_01234 0.23 +0.2
1,305,771 + MPMX26_01234 0.26 -0.6
1,305,785 + MPMX26_01234 0.30 -0.0
1,305,805 + MPMX26_01234 0.34 -0.6
1,305,805 + MPMX26_01234 0.34 +0.4
1,305,805 + MPMX26_01234 0.34 +0.7
1,305,805 + MPMX26_01234 0.34 +0.2
1,305,805 + MPMX26_01234 0.34 +0.5
1,305,829 + MPMX26_01234 0.40 +0.9
1,305,838 + MPMX26_01234 0.42 +1.1
1,305,838 + MPMX26_01234 0.42 +0.4
1,305,838 + MPMX26_01234 0.42 +0.4
1,305,838 + MPMX26_01234 0.42 +0.3
1,305,838 + MPMX26_01234 0.42 +0.2
1,305,838 + MPMX26_01234 0.42 -0.0
1,305,838 + MPMX26_01234 0.42 -0.4
1,305,838 + MPMX26_01234 0.42 -0.3
1,305,838 + MPMX26_01234 0.42 -0.1
1,305,838 + MPMX26_01234 0.42 +0.4
1,305,950 + MPMX26_01234 0.68 +1.1
1,305,952 + MPMX26_01234 0.68 -0.0
1,305,997 + MPMX26_01234 0.78 +0.4
1,305,997 + MPMX26_01234 0.78 +0.3
1,306,036 + MPMX26_01234 0.87 +0.4
1,306,036 + MPMX26_01234 0.87 +2.6
1,306,036 + MPMX26_01234 0.87 -0.3
1,306,036 + MPMX26_01234 0.87 +0.2
1,306,036 + MPMX26_01234 0.87 +1.0
1,306,036 + MPMX26_01234 0.87 +1.4
1,306,036 + MPMX26_01234 0.87 -2.2
1,306,036 + MPMX26_01234 0.87 +0.3
1,306,036 + MPMX26_01234 0.87 -0.3
1,306,036 + MPMX26_01234 0.87 +0.2
1,306,036 + MPMX26_01234 0.87 +0.3
1,306,036 + MPMX26_01234 0.87 -0.0
1,306,036 + MPMX26_01234 0.87 +1.6

Or see this region's nucleotide sequence