Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF951 and GFF952 overlap by 4 nucleotides GFF952 and GFF953 are separated by 10 nucleotides
GFF951 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 685,641 to 687,509
GFF951
GFF952 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 687,506 to 688,288
GFF952
GFF953 - Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1), at 688,299 to 689,090
GFF953
Position (kb) 687
688
689 Strain fitness (log2 ratio) -2
-1
0
1 at 686.791 kb on + strand, within GFF951 at 686.792 kb on - strand, within GFF951 at 686.792 kb on - strand, within GFF951 at 686.899 kb on + strand, within GFF951 at 686.994 kb on + strand, within GFF951 at 687.037 kb on + strand, within GFF951 at 687.184 kb on + strand, within GFF951 at 687.184 kb on + strand, within GFF951 at 687.184 kb on + strand, within GFF951 at 687.364 kb on + strand at 687.397 kb on + strand at 687.398 kb on - strand at 687.538 kb on - strand at 687.538 kb on - strand at 687.822 kb on + strand, within GFF952 at 687.823 kb on - strand, within GFF952 at 688.188 kb on + strand, within GFF952 at 688.272 kb on - strand at 688.272 kb on - strand at 688.327 kb on + strand at 688.327 kb on + strand at 688.328 kb on - strand at 688.328 kb on - strand at 688.328 kb on - strand at 688.381 kb on + strand, within GFF953 at 688.381 kb on + strand, within GFF953 at 688.382 kb on - strand, within GFF953 at 688.459 kb on + strand, within GFF953 at 688.459 kb on + strand, within GFF953 at 688.459 kb on + strand, within GFF953 at 688.459 kb on + strand, within GFF953 at 688.460 kb on - strand, within GFF953 at 688.460 kb on - strand, within GFF953 at 688.466 kb on - strand, within GFF953 at 688.675 kb on + strand, within GFF953 at 688.723 kb on + strand, within GFF953 at 688.723 kb on + strand, within GFF953 at 688.724 kb on - strand, within GFF953 at 688.724 kb on - strand, within GFF953 at 688.724 kb on - strand, within GFF953 at 688.768 kb on + strand, within GFF953 at 689.001 kb on + strand, within GFF953 at 689.001 kb on + strand, within GFF953 at 689.002 kb on - strand, within GFF953 at 689.059 kb on + strand at 689.273 kb on + strand at 689.274 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 686,791 + GFF951 0.62 +0.2 686,792 - GFF951 0.62 -0.2 686,792 - GFF951 0.62 -0.0 686,899 + GFF951 0.67 -1.0 686,994 + GFF951 0.72 -0.2 687,037 + GFF951 0.75 -0.3 687,184 + GFF951 0.83 +1.6 687,184 + GFF951 0.83 +0.1 687,184 + GFF951 0.83 +0.6 687,364 + -0.1 687,397 + -0.6 687,398 - -0.2 687,538 - +0.1 687,538 - +0.3 687,822 + GFF952 0.40 -0.8 687,823 - GFF952 0.40 -0.4 688,188 + GFF952 0.87 +0.1 688,272 - -0.2 688,272 - -0.2 688,327 + +0.8 688,327 + +0.2 688,328 - -0.8 688,328 - +0.5 688,328 - +0.5 688,381 + GFF953 0.10 -0.0 688,381 + GFF953 0.10 +1.4 688,382 - GFF953 0.10 +0.0 688,459 + GFF953 0.20 -0.2 688,459 + GFF953 0.20 -0.5 688,459 + GFF953 0.20 +0.5 688,459 + GFF953 0.20 +0.2 688,460 - GFF953 0.20 -0.5 688,460 - GFF953 0.20 -0.3 688,466 - GFF953 0.21 -2.0 688,675 + GFF953 0.47 +0.3 688,723 + GFF953 0.54 +1.1 688,723 + GFF953 0.54 -0.5 688,724 - GFF953 0.54 +0.3 688,724 - GFF953 0.54 -0.1 688,724 - GFF953 0.54 -0.7 688,768 + GFF953 0.59 -1.0 689,001 + GFF953 0.89 -0.3 689,001 + GFF953 0.89 +0.2 689,002 - GFF953 0.89 -0.2 689,059 + -1.4 689,273 + -0.1 689,274 - -0.1
Or see this region's nucleotide sequence