Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF924 and GFF925 are separated by 29 nucleotides GFF925 and GFF926 are separated by 17 nucleotides GFF926 and GFF927 are separated by 10 nucleotides GFF927 and GFF928 are separated by 33 nucleotides
GFF924 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 656,626 to 657,807
GFF924
GFF925 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 657,837 to 658,730
GFF925
GFF926 - MaoC family protein, at 658,748 to 659,164
GFF926
GFF927 - Acyl dehydratase, at 659,175 to 659,618
GFF927
GFF928 - Acetyl-CoA acetyltransferase, at 659,652 to 660,836
GFF928
Position (kb) 658
659
660 Strain fitness (log2 ratio) -2
-1
0
1 at 657.883 kb on + strand at 657.883 kb on + strand at 657.883 kb on + strand at 657.884 kb on - strand at 658.109 kb on - strand, within GFF925 at 658.171 kb on + strand, within GFF925 at 658.171 kb on + strand, within GFF925 at 658.172 kb on - strand, within GFF925 at 658.920 kb on + strand, within GFF926 at 659.169 kb on - strand at 659.287 kb on + strand, within GFF927 at 659.347 kb on + strand, within GFF927 at 659.509 kb on + strand, within GFF927 at 659.510 kb on - strand, within GFF927 at 659.777 kb on - strand, within GFF928 at 659.860 kb on + strand, within GFF928 at 659.927 kb on - strand, within GFF928
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 657,883 + +0.9 657,883 + +0.5 657,883 + +0.3 657,884 - -0.4 658,109 - GFF925 0.30 +0.4 658,171 + GFF925 0.37 +0.8 658,171 + GFF925 0.37 -0.2 658,172 - GFF925 0.37 -0.7 658,920 + GFF926 0.41 +1.1 659,169 - -0.3 659,287 + GFF927 0.25 +0.8 659,347 + GFF927 0.39 -1.8 659,509 + GFF927 0.75 -0.3 659,510 - GFF927 0.75 +0.5 659,777 - GFF928 0.11 -0.0 659,860 + GFF928 0.18 -0.2 659,927 - GFF928 0.23 +0.8
Or see this region's nucleotide sequence