Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF912

Experiment: Ying_Others16 rep C; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF911 and GFF912 are separated by 60 nucleotidesGFF912 and GFF913 overlap by 1 nucleotides GFF911 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 642,206 to 643,363 GFF911 GFF912 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 643,424 to 644,593 GFF912 GFF913 - Immune-responsive protein 1, at 644,593 to 646,017 GFF913 Position (kb) 643 644 645Strain fitness (log2 ratio) -1 0 1 2at 642.541 kb on + strand, within GFF911at 642.542 kb on - strand, within GFF911at 642.588 kb on + strand, within GFF911at 642.588 kb on + strand, within GFF911at 642.729 kb on - strand, within GFF911at 642.729 kb on - strand, within GFF911at 642.844 kb on - strand, within GFF911at 642.844 kb on - strand, within GFF911at 642.844 kb on - strand, within GFF911at 642.872 kb on + strand, within GFF911at 642.872 kb on + strand, within GFF911at 642.873 kb on - strand, within GFF911at 642.873 kb on - strand, within GFF911at 642.971 kb on - strand, within GFF911at 642.971 kb on - strand, within GFF911at 643.008 kb on + strand, within GFF911at 643.008 kb on + strand, within GFF911at 643.008 kb on + strand, within GFF911at 643.009 kb on - strand, within GFF911at 643.009 kb on - strand, within GFF911at 643.158 kb on + strand, within GFF911at 643.158 kb on + strand, within GFF911at 643.158 kb on + strand, within GFF911at 643.159 kb on - strand, within GFF911at 643.159 kb on - strand, within GFF911at 643.518 kb on + strandat 643.522 kb on - strandat 643.549 kb on - strand, within GFF912at 643.554 kb on + strand, within GFF912at 643.660 kb on - strand, within GFF912at 643.660 kb on - strand, within GFF912at 643.785 kb on + strand, within GFF912at 643.969 kb on - strand, within GFF912at 644.140 kb on - strand, within GFF912at 644.140 kb on - strand, within GFF912at 644.140 kb on - strand, within GFF912at 644.374 kb on - strand, within GFF912at 644.587 kb on + strandat 644.595 kb on - strandat 644.716 kb on + strandat 644.717 kb on - strandat 645.279 kb on - strand, within GFF913at 645.299 kb on + strand, within GFF913at 645.299 kb on + strand, within GFF913at 645.299 kb on + strand, within GFF913at 645.300 kb on - strand, within GFF913at 645.421 kb on - strand, within GFF913

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2
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642,541 + GFF911 0.29 -0.1
642,542 - GFF911 0.29 -1.5
642,588 + GFF911 0.33 -0.2
642,588 + GFF911 0.33 -0.0
642,729 - GFF911 0.45 -0.5
642,729 - GFF911 0.45 -0.3
642,844 - GFF911 0.55 +1.2
642,844 - GFF911 0.55 -0.5
642,844 - GFF911 0.55 +0.1
642,872 + GFF911 0.58 -0.1
642,872 + GFF911 0.58 -1.7
642,873 - GFF911 0.58 +0.2
642,873 - GFF911 0.58 -0.5
642,971 - GFF911 0.66 +0.4
642,971 - GFF911 0.66 +0.2
643,008 + GFF911 0.69 +1.6
643,008 + GFF911 0.69 +0.2
643,008 + GFF911 0.69 -0.9
643,009 - GFF911 0.69 +0.1
643,009 - GFF911 0.69 -0.9
643,158 + GFF911 0.82 +0.1
643,158 + GFF911 0.82 -0.9
643,158 + GFF911 0.82 +0.2
643,159 - GFF911 0.82 -1.6
643,159 - GFF911 0.82 +0.1
643,518 + -0.1
643,522 - +2.2
643,549 - GFF912 0.11 -0.6
643,554 + GFF912 0.11 +0.5
643,660 - GFF912 0.20 -0.6
643,660 - GFF912 0.20 +0.1
643,785 + GFF912 0.31 +0.1
643,969 - GFF912 0.47 +0.6
644,140 - GFF912 0.61 +0.6
644,140 - GFF912 0.61 -0.1
644,140 - GFF912 0.61 -0.6
644,374 - GFF912 0.81 -0.7
644,587 + +0.2
644,595 - +0.5
644,716 + +0.0
644,717 - +1.0
645,279 - GFF913 0.48 -0.4
645,299 + GFF913 0.50 +0.2
645,299 + GFF913 0.50 -0.7
645,299 + GFF913 0.50 +0.8
645,300 - GFF913 0.50 -0.3
645,421 - GFF913 0.58 -0.5

Or see this region's nucleotide sequence