Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF830 and GFF831 are separated by 148 nucleotides GFF831 and GFF1078 are separated by 22 nucleotides GFF1078 and GFF1079 are separated by 31 nucleotides
GFF830 - NAD kinase (EC 2.7.1.23), at 526,279 to 527,145
GFF830
GFF831 - Heat-inducible transcription repressor HrcA, at 527,294 to 528,310
GFF831
GFF1078 - tRNA-Met-CAT, at 528,333 to 528,406
GFF1078
GFF1079 - tRNA-Arg-ACG, at 528,438 to 528,511
GFF1079
Position (kb) 527
528
529 Strain fitness (log2 ratio) -1
0
1
2 at 527.197 kb on - strand at 527.205 kb on + strand at 527.206 kb on - strand at 527.236 kb on + strand at 527.237 kb on - strand at 527.279 kb on + strand at 527.280 kb on - strand at 527.280 kb on - strand at 527.339 kb on + strand at 527.339 kb on + strand at 527.339 kb on + strand at 527.340 kb on - strand at 527.340 kb on - strand at 527.340 kb on - strand at 528.119 kb on + strand, within GFF831 at 528.119 kb on + strand, within GFF831 at 528.119 kb on + strand, within GFF831 at 528.119 kb on + strand, within GFF831 at 528.119 kb on + strand, within GFF831 at 528.120 kb on - strand, within GFF831 at 528.120 kb on - strand, within GFF831 at 528.179 kb on + strand, within GFF831 at 528.179 kb on + strand, within GFF831 at 528.308 kb on + strand at 528.309 kb on - strand at 528.318 kb on + strand at 528.318 kb on + strand at 528.422 kb on + strand at 528.422 kb on + strand at 528.526 kb on + strand at 528.527 kb on - strand at 528.539 kb on + strand at 528.540 kb on - strand at 528.555 kb on - strand at 528.748 kb on + strand at 528.748 kb on + strand at 528.748 kb on + strand at 528.749 kb on - strand at 528.749 kb on - strand at 528.749 kb on - strand at 528.749 kb on - strand at 528.749 kb on - strand at 528.839 kb on + strand at 528.840 kb on - strand at 529.160 kb on + strand at 529.160 kb on + strand at 529.161 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 527,197 - +0.5 527,205 + +0.1 527,206 - +0.4 527,236 + -0.1 527,237 - -0.5 527,279 + -0.5 527,280 - -0.3 527,280 - -0.4 527,339 + -0.3 527,339 + +0.2 527,339 + +0.8 527,340 - +1.2 527,340 - -0.2 527,340 - +0.1 528,119 + GFF831 0.81 +0.4 528,119 + GFF831 0.81 +0.6 528,119 + GFF831 0.81 -0.1 528,119 + GFF831 0.81 +0.5 528,119 + GFF831 0.81 +1.0 528,120 - GFF831 0.81 +1.7 528,120 - GFF831 0.81 -0.3 528,179 + GFF831 0.87 +0.3 528,179 + GFF831 0.87 +0.6 528,308 + -0.7 528,309 - -0.7 528,318 + -0.1 528,318 + -1.1 528,422 + +0.3 528,422 + +0.3 528,526 + +0.1 528,527 - -0.5 528,539 + -1.2 528,540 - -0.3 528,555 - -0.7 528,748 + -0.4 528,748 + -0.3 528,748 + -0.5 528,749 - -0.2 528,749 - -0.1 528,749 - -0.0 528,749 - -1.0 528,749 - +0.8 528,839 + +2.1 528,840 - -0.7 529,160 + -0.3 529,160 + -1.0 529,161 - -1.4
Or see this region's nucleotide sequence