Experiment: Ying_Others16 rep C; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF736 and GFF737 are separated by 140 nucleotides GFF737 and GFF738 are separated by 48 nucleotides
GFF736 - Argininosuccinate lyase (EC 4.3.2.1), at 421,316 to 422,767
GFF736
GFF737 - Autolysin sensor kinase (EC 2.7.3.-), at 422,908 to 423,978
GFF737
GFF738 - Autolysis response regulater LytR, at 424,027 to 424,767
GFF738
Position (kb) 422
423
424 Strain fitness (log2 ratio) -1
0
1 at 422.874 kb on + strand at 422.875 kb on - strand at 422.875 kb on - strand at 423.142 kb on + strand, within GFF737 at 423.142 kb on + strand, within GFF737 at 423.142 kb on + strand, within GFF737 at 423.142 kb on + strand, within GFF737 at 423.142 kb on + strand, within GFF737 at 423.143 kb on - strand, within GFF737 at 423.143 kb on - strand, within GFF737 at 423.275 kb on - strand, within GFF737 at 423.616 kb on + strand, within GFF737 at 423.616 kb on + strand, within GFF737 at 423.617 kb on - strand, within GFF737 at 423.911 kb on + strand at 423.911 kb on + strand at 423.912 kb on - strand at 423.912 kb on - strand at 423.912 kb on - strand at 423.912 kb on - strand at 423.912 kb on - strand at 423.968 kb on + strand at 423.974 kb on + strand at 423.974 kb on + strand at 423.974 kb on + strand at 423.975 kb on - strand at 423.975 kb on - strand at 423.975 kb on - strand at 423.976 kb on + strand at 423.977 kb on - strand at 424.036 kb on + strand at 424.041 kb on - strand at 424.041 kb on - strand at 424.285 kb on + strand, within GFF738 at 424.285 kb on + strand, within GFF738 at 424.285 kb on + strand, within GFF738 at 424.285 kb on + strand, within GFF738 at 424.285 kb on + strand, within GFF738 at 424.286 kb on - strand, within GFF738 at 424.286 kb on - strand, within GFF738 at 424.286 kb on - strand, within GFF738 at 424.331 kb on - strand, within GFF738 at 424.492 kb on + strand, within GFF738 at 424.492 kb on + strand, within GFF738 at 424.492 kb on + strand, within GFF738 at 424.493 kb on - strand, within GFF738 at 424.513 kb on + strand, within GFF738 at 424.513 kb on + strand, within GFF738 at 424.513 kb on + strand, within GFF738 at 424.513 kb on + strand, within GFF738 at 424.514 kb on - strand, within GFF738 at 424.582 kb on + strand, within GFF738 at 424.583 kb on - strand, within GFF738 at 424.583 kb on - strand, within GFF738 at 424.860 kb on + strand at 424.861 kb on - strand at 424.861 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 2 remove 422,874 + -1.1 422,875 - +1.5 422,875 - -0.1 423,142 + GFF737 0.22 +0.3 423,142 + GFF737 0.22 -0.2 423,142 + GFF737 0.22 +0.1 423,142 + GFF737 0.22 +0.2 423,142 + GFF737 0.22 +0.5 423,143 - GFF737 0.22 +0.8 423,143 - GFF737 0.22 +1.6 423,275 - GFF737 0.34 +0.3 423,616 + GFF737 0.66 -0.4 423,616 + GFF737 0.66 +0.5 423,617 - GFF737 0.66 -1.3 423,911 + +0.4 423,911 + +0.3 423,912 - +0.4 423,912 - +1.4 423,912 - +0.9 423,912 - +0.6 423,912 - +0.3 423,968 + +0.7 423,974 + -0.1 423,974 + +1.1 423,974 + -0.5 423,975 - +0.0 423,975 - +0.0 423,975 - +0.1 423,976 + +0.0 423,977 - +1.4 424,036 + +1.4 424,041 - +1.4 424,041 - +0.8 424,285 + GFF738 0.35 +1.5 424,285 + GFF738 0.35 +1.0 424,285 + GFF738 0.35 +0.5 424,285 + GFF738 0.35 +0.2 424,285 + GFF738 0.35 +0.5 424,286 - GFF738 0.35 +0.5 424,286 - GFF738 0.35 +0.8 424,286 - GFF738 0.35 +0.0 424,331 - GFF738 0.41 +1.1 424,492 + GFF738 0.63 +1.7 424,492 + GFF738 0.63 +0.2 424,492 + GFF738 0.63 +0.9 424,493 - GFF738 0.63 +0.5 424,513 + GFF738 0.66 +1.4 424,513 + GFF738 0.66 +0.7 424,513 + GFF738 0.66 +0.9 424,513 + GFF738 0.66 +0.1 424,514 - GFF738 0.66 +0.7 424,582 + GFF738 0.75 +0.7 424,583 - GFF738 0.75 +1.2 424,583 - GFF738 0.75 +1.7 424,860 + -0.2 424,861 - +1.1 424,861 - +0.2
Or see this region's nucleotide sequence